Wall clock time and date at job start Tue Mar 31 2020 18:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47048 * 2 1 4 4 C 1.50703 * 109.47120 * 240.00406 * 2 1 3 5 5 H 1.08005 * 119.99660 * 239.99996 * 4 2 1 6 6 C 1.37877 * 120.00167 * 59.99975 * 4 2 1 7 7 N 1.31512 * 119.99756 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47045 * 59.99244 * 8 6 4 10 10 H 1.48490 * 109.47011 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46755 * 299.99700 * 8 6 4 12 12 C 1.52996 * 109.47540 * 120.00235 * 2 1 3 13 13 S 1.81408 * 109.46759 * 300.00245 * 12 2 1 14 14 O 1.42095 * 110.54317 * 68.37535 * 13 12 2 15 15 O 1.42099 * 110.54002 * 291.61751 * 13 12 2 16 16 N 1.65604 * 104.44743 * 179.97438 * 13 12 2 17 17 C 1.46928 * 120.63239 * 89.99836 * 16 13 12 18 18 C 1.53187 * 108.77623 * 126.41216 * 17 16 13 19 19 C 1.53036 * 109.33909 * 54.61900 * 18 17 16 20 20 C 1.53002 * 109.46005 * 58.67146 * 19 18 17 21 21 O 1.42899 * 109.47168 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46209 * 178.63045 * 19 18 17 23 23 O 1.42905 * 109.47510 * 180.02562 * 22 19 18 24 24 C 1.53042 * 109.54058 * 298.68652 * 19 18 17 25 25 C 1.46927 * 120.63146 * 270.01894 * 16 13 12 26 26 H 1.09004 * 109.47070 * 299.99559 * 1 2 3 27 27 H 1.08996 * 109.47290 * 59.99636 * 1 2 3 28 28 H 1.09004 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46890 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46998 * 299.99944 * 3 2 1 31 31 H 1.09004 * 109.46825 * 60.00291 * 3 2 1 32 32 H 0.97004 * 120.00099 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47750 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.47144 * 59.99528 * 12 2 1 35 35 H 1.09000 * 109.58414 * 6.62382 * 17 16 13 36 36 H 1.09005 * 109.70435 * 246.27486 * 17 16 13 37 37 H 1.09002 * 109.49796 * 174.58834 * 18 17 16 38 38 H 1.09000 * 109.49812 * 294.65558 * 18 17 16 39 39 H 1.09000 * 109.47354 * 299.99859 * 20 19 18 40 40 H 1.08995 * 109.47343 * 60.00237 * 20 19 18 41 41 H 0.96702 * 114.00150 * 179.97438 * 21 20 19 42 42 H 1.08996 * 109.47348 * 299.99872 * 22 19 18 43 43 H 1.08997 * 109.46888 * 60.00237 * 22 19 18 44 44 H 0.96693 * 113.99855 * 180.02562 * 23 22 19 45 45 H 1.09003 * 109.46473 * 301.36154 * 24 19 18 46 46 H 1.09000 * 109.52301 * 181.30261 * 24 19 18 47 47 H 1.08999 * 109.58621 * 353.37928 * 25 16 13 48 48 H 1.09003 * 109.58297 * 113.65493 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8259 -2.5201 -4.0078 10 1 1.8259 -0.4204 -5.2204 11 1 3.8064 -1.1206 -4.0082 12 6 2.0400 -0.7213 1.2491 13 16 1.4353 0.1339 2.7303 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0530 -0.7409 3.9936 17 6 3.3648 -0.4067 4.5649 18 6 3.2091 -0.2120 6.0764 19 6 2.5579 -1.4568 6.6833 20 6 3.4237 -2.6823 6.3841 21 8 2.8162 -3.8447 6.9513 22 6 2.4322 -1.2793 8.1978 23 8 1.8247 -2.4418 8.7649 24 6 1.1675 -1.6551 6.0754 25 6 1.3000 -1.8662 4.5640 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8901 32 1 0.7081 1.1610 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 3.7359 0.5137 4.1142 36 1 4.0673 -1.2174 4.3713 37 1 4.1900 -0.0584 6.5264 38 1 2.5806 0.6576 6.2683 39 1 3.5140 -2.8088 5.3053 40 1 4.4139 -2.5422 6.8176 41 1 3.3117 -4.6611 6.7999 42 1 3.4227 -1.1397 8.6307 43 1 1.8159 -0.4060 8.4113 44 1 1.7129 -2.3988 9.7244 45 1 0.5578 -0.7722 6.2674 46 1 0.6947 -2.5284 6.5247 47 1 0.3088 -1.9087 4.1127 48 1 1.8309 -2.7978 4.3681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475657438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:52 Heat of formation + Delta-G solvation = -197.401174 kcal Electronic energy + Delta-G solvation = -29569.459818 eV Core-core repulsion = 25557.597327 eV Total energy + Delta-G solvation = -4011.862491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75992 -38.17979 -38.13768 -37.43981 -36.86307 -36.71975 -33.95192 -33.63285 -32.06632 -28.51163 -27.71711 -27.70644 -27.25548 -26.73350 -24.42723 -23.40777 -21.31990 -20.43820 -19.16034 -18.74583 -18.32494 -17.88589 -17.64982 -17.09765 -16.93405 -16.72040 -16.40543 -15.83013 -15.67765 -15.32825 -15.07297 -14.69176 -14.43379 -14.40613 -14.31422 -14.04759 -13.84499 -13.56486 -13.35017 -13.25892 -13.05929 -12.91717 -12.84328 -12.81315 -12.61069 -12.50381 -12.24790 -12.16243 -12.08396 -11.96771 -11.57838 -11.53853 -11.49897 -11.43765 -11.22148 -10.69873 -10.65299 -10.54272 -10.41904 -9.81815 -8.03536 -6.22679 -0.63782 1.45072 1.45448 1.52855 1.79803 2.43880 2.91019 3.17839 3.23039 3.31084 3.43448 3.62498 3.89640 4.04298 4.09414 4.12933 4.19877 4.27900 4.37473 4.48916 4.49964 4.58822 4.60641 4.64807 4.67560 4.80272 4.81522 4.85047 4.85627 4.93070 4.98191 5.01906 5.07225 5.09969 5.24559 5.34296 5.35629 5.38545 5.49289 5.63360 5.72508 5.95913 6.10387 6.33208 6.81909 7.08093 7.13417 7.45723 8.96137 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.003172 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.840556 B = 8824.170869 C = 9198.666029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.158 4.158 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.270 1.270 12 C -0.585 4.585 13 S 2.609 3.391 14 O -0.991 6.991 15 O -0.986 6.986 16 N -1.000 6.000 17 C 0.104 3.896 18 C -0.117 4.117 19 C -0.058 4.058 20 C 0.086 3.914 21 O -0.565 6.565 22 C 0.091 3.909 23 O -0.565 6.565 24 C -0.106 4.106 25 C 0.112 3.888 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.383 0.617 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.383 0.617 45 H 0.048 0.952 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -7.387 21.369 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.216 4.216 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.195 1.195 12 C -0.718 4.718 13 S 2.708 3.292 14 O -0.981 6.981 15 O -0.976 6.976 16 N -0.838 5.838 17 C -0.020 4.020 18 C -0.157 4.157 19 C -0.058 4.058 20 C 0.008 3.992 21 O -0.371 6.371 22 C 0.013 3.987 23 O -0.371 6.371 24 C -0.145 4.145 25 C -0.012 4.012 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.230 0.770 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.231 0.769 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.898 -6.239 20.903 22.879 hybrid contribution 0.658 -0.731 -1.048 1.437 sum 7.555 -6.970 19.855 22.358 Atomic orbital electron populations 1.22200 0.97887 1.00358 1.01246 1.17922 0.92234 0.92217 0.90941 1.22190 0.99853 0.98298 1.01260 1.21280 1.31799 1.12362 0.90443 0.91875 1.25694 0.95145 0.95646 1.01718 1.69940 1.37094 1.23725 1.23943 0.85658 0.78808 0.78699 0.78738 1.19730 1.21314 1.19548 1.30512 1.12458 1.13184 1.15627 1.04908 0.73889 0.74784 0.75650 1.93483 1.31531 1.86932 1.86160 1.93481 1.78389 1.39554 1.86162 1.57657 1.30232 1.47384 1.48577 1.21755 0.83189 1.02655 0.94403 1.21843 1.02796 0.96481 0.94531 1.20627 0.95608 0.94981 0.94614 1.22199 0.94614 0.85357 0.97009 1.86663 1.52891 1.17712 1.79794 1.22074 0.96948 0.87509 0.92200 1.86668 1.83619 1.40383 1.26421 1.21665 0.96872 1.02107 0.93835 1.21613 0.96358 0.88583 0.94677 0.95045 0.91061 0.94279 0.93989 0.91112 0.94989 0.92899 0.84534 0.84969 0.89048 0.88596 0.87403 0.91641 0.92990 0.92608 0.76962 0.92382 0.94116 0.76912 0.93336 0.89892 0.90276 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 2 C 0.07 3.35 0.52 -52.93 -0.03 3.32 16 3 C -0.16 -7.89 7.78 71.98 0.56 -7.33 16 4 C -0.52 -27.18 8.01 25.60 0.21 -26.98 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 0.92 5.15 84.66 0.44 1.36 16 7 N -0.91 -50.62 9.35 21.45 0.20 -50.42 16 8 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 C -0.59 -22.31 5.12 71.98 0.37 -21.95 16 13 S 2.61 96.14 4.49 -56.49 -0.25 95.89 16 14 O -0.99 -42.21 14.21 -127.65 -1.81 -44.02 16 15 O -0.99 -40.46 14.21 -127.65 -1.81 -42.27 16 16 N -1.00 -26.86 3.22 -513.09 -1.65 -28.51 16 17 C 0.10 2.15 5.96 86.36 0.51 2.66 16 18 C -0.12 -1.99 4.90 30.67 0.15 -1.84 16 19 C -0.06 -1.03 0.52 -52.15 -0.03 -1.06 16 20 C 0.09 1.30 5.16 71.98 0.37 1.67 16 21 O -0.56 -9.58 11.01 -127.98 -1.41 -10.99 16 22 C 0.09 1.41 5.91 71.98 0.43 1.83 16 23 O -0.57 -9.78 10.97 -127.98 -1.40 -11.18 16 24 C -0.11 -2.44 4.61 30.67 0.14 -2.30 16 25 C 0.11 2.77 5.96 86.36 0.51 3.28 16 26 H 0.03 1.52 5.46 -2.38 -0.01 1.51 16 27 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 31 H 0.03 1.52 5.46 -2.38 -0.01 1.51 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.21 16 33 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 34 H 0.13 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.09 2.04 6.86 -2.39 -0.02 2.02 16 36 H 0.10 1.43 6.70 -2.38 -0.02 1.41 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 0.76 4.99 -2.39 -0.01 0.75 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.38 3.50 9.12 -74.06 -0.68 2.82 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.38 3.46 9.12 -74.06 -0.68 2.79 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 2.04 7.22 -2.39 -0.02 2.02 16 47 H 0.08 2.20 6.86 -2.39 -0.02 2.18 16 48 H 0.09 1.79 6.71 -2.39 -0.02 1.77 16 Total: -1.00 -72.31 363.79 -2.29 -74.60 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.37 Total: 27.60 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 4.19 Total: -54.81 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.45 Total: -78.93 kcal Atomic # 8 Polarization: -102.03 SS G_CDS: -6.44 Total: -108.47 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 96.14 SS G_CDS: -0.25 Total: 95.89 kcal Total: -72.31 -2.29 -74.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475657438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.802 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds