Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46923 * 2 1 4 4 C 1.52996 * 109.47061 * 120.00225 * 2 1 3 5 5 H 1.08997 * 109.47610 * 54.42940 * 4 2 1 6 6 N 1.46501 * 109.46877 * 294.42691 * 4 2 1 7 7 C 1.34776 * 119.99778 * 85.00658 * 6 4 2 8 8 O 1.21582 * 120.00559 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99708 * 179.97438 * 7 6 4 10 10 C 1.46495 * 119.99861 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47418 * 179.97438 * 10 9 7 12 12 C 1.38327 * 119.96757 * 270.02497 * 11 10 9 13 13 C 1.38273 * 120.13810 * 179.97438 * 12 11 10 14 14 C 1.38119 * 120.07245 * 359.67799 * 13 12 11 15 15 C 1.38858 * 119.92787 * 0.59781 * 14 13 12 16 16 O 1.35752 * 120.07083 * 179.69448 * 15 14 13 17 17 C 1.34832 * 116.99896 * 353.87247 * 16 15 14 18 18 H 1.08001 * 119.99937 * 4.90656 * 17 16 15 19 19 C 1.38652 * 119.99726 * 184.90842 * 17 16 15 20 20 N 1.31558 * 120.00381 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99699 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47427 * 59.99949 * 21 19 17 23 23 H 1.48504 * 109.47026 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47115 * 299.99848 * 21 19 17 25 25 C 1.38076 * 119.96507 * 89.99641 * 11 10 9 26 26 C 1.50702 * 109.47136 * 174.42989 * 4 2 1 27 27 N 1.34781 * 119.99962 * 278.92806 * 26 4 2 28 28 O 1.21278 * 120.00298 * 98.92184 * 26 4 2 29 29 H 1.08999 * 109.47589 * 307.10379 * 1 2 3 30 30 H 1.09007 * 109.47446 * 67.10428 * 1 2 3 31 31 H 1.09002 * 109.47333 * 187.09854 * 1 2 3 32 32 H 1.09005 * 109.46942 * 240.00219 * 2 1 3 33 33 H 1.09001 * 109.47506 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47589 * 300.00325 * 3 2 1 35 35 H 1.09005 * 109.47133 * 60.00336 * 3 2 1 36 36 H 0.96999 * 120.00037 * 264.99697 * 6 4 2 37 37 H 0.97000 * 120.00308 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.47145 * 60.00114 * 10 9 7 39 39 H 1.08998 * 109.47652 * 300.00385 * 10 9 7 40 40 H 1.08001 * 119.92690 * 359.97438 * 12 11 10 41 41 H 1.08002 * 119.96245 * 179.97438 * 13 12 11 42 42 H 1.08005 * 120.03967 * 180.31378 * 14 13 12 43 43 H 0.96995 * 119.99857 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.03589 * 0.05617 * 25 11 10 45 45 H 0.97001 * 119.99580 * 4.71540 * 27 26 4 46 46 H 0.96996 * 120.00101 * 184.72258 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5975 -1.7161 1.3005 6 7 1.6642 0.0424 2.4416 7 6 0.4480 -0.1297 2.9964 8 8 -0.3374 -0.9183 2.5072 9 7 0.1025 0.5726 4.0938 10 6 -1.2195 0.3860 4.6966 11 6 -1.3530 1.2807 5.9018 12 6 -0.9737 0.8201 7.1497 13 6 -1.0941 1.6383 8.2579 14 6 -1.5877 2.9210 8.1207 15 6 -1.9747 3.3844 6.8703 16 8 -2.4660 4.6425 6.7332 17 6 -2.6717 5.3459 7.8649 18 1 -2.3735 4.9348 8.8180 19 6 -3.2661 6.5971 7.8050 20 7 -3.6290 7.0982 6.6439 21 14 -3.5505 7.5720 9.3728 22 1 -2.2490 7.8249 10.0415 23 1 -4.1954 8.8677 9.0399 24 1 -4.4328 6.7989 10.2833 25 6 -1.8533 2.5597 5.7591 26 6 3.5406 -0.8418 1.1822 27 7 4.1059 -1.8228 0.4509 28 8 4.2397 -0.0561 1.7861 29 1 -0.3634 0.6199 0.8196 30 1 -0.3634 0.3998 -0.9467 31 1 -0.3634 -1.0198 0.1270 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 2.2907 0.6718 2.8318 37 1 0.7292 1.2015 4.4844 38 1 -1.3362 -0.6539 5.0019 39 1 -1.9900 0.6393 3.9684 40 1 -0.5826 -0.1807 7.2587 41 1 -0.7975 1.2756 9.2310 42 1 -1.6768 3.5614 8.9859 43 1 -4.0451 7.9733 6.6021 44 1 -2.1497 2.9187 4.7846 45 1 3.5502 -2.4087 -0.0866 46 1 5.0683 -1.9430 0.4622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477870255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = -77.989871 kcal Electronic energy + Delta-G solvation = -28393.234142 eV Core-core repulsion = 24283.398513 eV Total energy + Delta-G solvation = -4109.835629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89287 -39.51820 -38.99461 -36.96757 -36.22618 -34.37990 -34.15293 -33.11681 -32.32092 -30.66677 -29.14270 -27.74350 -27.26748 -25.73286 -24.93221 -21.80123 -21.72369 -21.28000 -20.77386 -19.83302 -18.88573 -18.17979 -17.59551 -17.04175 -16.56719 -16.29356 -16.04097 -15.26261 -15.08879 -14.86309 -14.55358 -14.52517 -14.32005 -14.11677 -13.80711 -13.58138 -13.46452 -13.34701 -12.71218 -12.49191 -12.37780 -12.26473 -12.08488 -11.70096 -11.58362 -11.36867 -11.25292 -11.06580 -10.91685 -10.81420 -10.69733 -10.48977 -10.32339 -10.16014 -10.14541 -9.40866 -9.26003 -8.88323 -8.79613 -8.24378 -7.32126 -6.48335 -4.07907 1.85007 2.13494 2.27630 2.64204 3.10798 3.11552 3.14245 3.15121 3.29778 3.93319 4.22350 4.37825 4.50910 4.58369 4.66878 4.89044 4.94840 5.07653 5.19588 5.29622 5.32910 5.55286 5.56480 5.71142 5.77705 5.85764 5.86220 5.87038 5.92305 6.08290 6.09435 6.24303 6.26168 6.32286 6.33346 6.56310 6.58053 6.82622 6.83075 6.92195 7.01238 7.19995 7.28383 7.36458 7.71811 7.76107 7.95630 8.03115 8.60920 8.96900 9.65583 10.69360 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002196 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.470983 B =12748.146201 C =13261.726221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.150 4.150 4 C 0.152 3.848 5 H 0.111 0.889 6 N -0.732 5.732 7 C 0.708 3.292 8 O -0.590 6.590 9 N -0.735 5.735 10 C 0.188 3.812 11 C -0.073 4.073 12 C -0.194 4.194 13 C -0.077 4.077 14 C -0.225 4.225 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.169 4.169 26 C 0.518 3.482 27 N -0.851 5.851 28 O -0.534 6.534 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.406 0.594 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.404 0.596 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 -16.601 -11.524 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 C -0.207 4.207 4 C 0.042 3.958 5 H 0.129 0.871 6 N -0.390 5.390 7 C 0.408 3.592 8 O -0.469 6.469 9 N -0.389 5.389 10 C 0.065 3.935 11 C -0.074 4.074 12 C -0.213 4.213 13 C -0.095 4.095 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.080 6.080 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.189 4.189 26 C 0.302 3.698 27 N -0.415 5.415 28 O -0.410 6.410 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.242 0.758 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.233 0.767 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 11.662 -16.363 -11.790 23.297 hybrid contribution 0.635 0.754 1.004 1.407 sum 12.297 -15.610 -10.786 22.610 Atomic orbital electron populations 1.21833 0.92827 1.03281 1.01396 1.21509 0.98015 0.97040 0.95470 1.21848 1.00851 0.95448 1.02554 1.20663 0.90428 0.98013 0.86686 0.87141 1.44773 1.16569 1.47116 1.30520 1.15791 0.81743 0.81360 0.80317 1.90909 1.51143 1.40113 1.64726 1.45250 1.18475 1.45774 1.29420 1.19992 0.83053 0.98278 0.92159 1.19278 1.00514 0.93822 0.93797 1.20483 1.08540 0.99938 0.92361 1.20743 0.97635 0.93520 0.97601 1.21240 1.07788 0.97376 0.98090 1.19330 0.92169 0.85953 0.92956 1.83982 1.70691 1.19421 1.33858 1.21272 1.41294 0.99356 0.85030 0.89105 1.25291 0.95979 0.96400 0.98791 1.70026 1.37713 1.17793 1.24063 0.85781 0.79002 0.78725 0.79932 1.19494 1.20253 1.19471 1.20091 1.07949 0.93178 0.97691 1.20687 0.90780 0.80217 0.78140 1.43772 1.12189 1.35402 1.50173 1.90759 1.64242 1.41345 1.44653 0.92025 0.93259 0.91512 0.90400 0.92678 0.92341 0.91912 0.75754 0.76615 0.91113 0.90977 0.87509 0.87318 0.85501 0.91905 0.86387 0.76739 0.76449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.67 37.16 0.29 -1.11 16 2 C -0.10 -0.84 2.73 -90.62 -0.25 -1.08 16 3 C -0.15 -1.38 8.79 37.16 0.33 -1.06 16 4 C 0.15 1.36 2.35 -69.08 -0.16 1.20 16 5 H 0.11 0.96 7.57 -51.93 -0.39 0.57 16 6 N -0.73 -7.90 4.01 -59.81 -0.24 -8.14 16 7 C 0.71 9.35 7.22 -86.91 -0.63 8.72 16 8 O -0.59 -9.15 13.36 5.29 0.07 -9.08 16 9 N -0.73 -9.61 5.55 -66.42 -0.37 -9.98 16 10 C 0.19 2.73 5.80 -5.20 -0.03 2.70 16 11 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 12 C -0.19 -3.16 9.70 -39.54 -0.38 -3.55 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.23 -4.71 9.17 -39.40 -0.36 -5.07 16 15 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 16 O -0.18 -4.92 9.76 0.04 0.00 -4.92 16 17 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 18 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 21 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 26 C 0.52 4.46 6.46 -10.98 -0.07 4.39 16 27 N -0.85 -3.83 8.87 31.22 0.28 -3.55 16 28 O -0.53 -6.55 16.45 5.56 0.09 -6.46 16 29 H 0.06 0.79 6.27 -51.93 -0.33 0.47 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.53 7.15 -51.93 -0.37 0.16 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.67 7.46 -51.93 -0.39 0.28 16 36 H 0.41 4.32 7.76 -40.82 -0.32 4.00 16 37 H 0.40 4.86 8.48 -40.82 -0.35 4.51 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.66 5.65 -52.48 -0.30 2.37 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.40 0.70 8.83 -40.82 -0.36 0.34 16 46 H 0.40 1.44 8.93 -40.82 -0.36 1.08 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -33.45 382.82 -7.66 -41.10 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.33 Total: 12.73 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.66 Total: -8.46 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.43 Total: -45.91 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.16 Total: -20.46 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.45 -7.66 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477870255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.885 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds