Wall clock time and date at job start Tue Mar 31 2020 19:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47316 * 2 1 4 4 H 1.09001 * 109.46641 * 302.96447 * 3 2 1 5 5 C 1.53001 * 109.47202 * 182.96470 * 3 2 1 6 6 N 1.46498 * 109.47022 * 184.99444 * 5 3 2 7 7 C 1.34778 * 119.99756 * 179.97438 * 6 5 3 8 8 O 1.21586 * 120.00337 * 359.97438 * 7 6 5 9 9 C 1.47541 * 119.99820 * 180.02562 * 7 6 5 10 10 C 1.39706 * 120.18943 * 359.97438 * 9 7 6 11 11 C 1.37785 * 119.90552 * 179.97438 * 10 9 7 12 12 C 1.38551 * 120.30445 * 0.02562 * 11 10 9 13 13 C 1.38053 * 120.38554 * 359.97438 * 12 11 10 14 14 C 1.38717 * 120.08673 * 359.74425 * 13 12 11 15 15 O 1.35649 * 120.15189 * 180.27418 * 14 13 12 16 16 N 1.46896 * 109.47253 * 62.95980 * 3 2 1 17 17 C 1.46904 * 110.99660 * 65.52663 * 16 3 2 18 18 C 1.50694 * 109.47075 * 182.18076 * 17 16 3 19 19 O 1.21296 * 120.00093 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00286 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00453 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00065 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00191 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46777 * 60.00367 * 25 23 21 27 27 H 1.48501 * 109.47008 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47225 * 300.00118 * 25 23 21 29 29 H 1.09006 * 109.46861 * 54.78101 * 1 2 3 30 30 H 1.09000 * 109.47187 * 174.77820 * 1 2 3 31 31 H 1.09005 * 109.47199 * 294.78334 * 1 2 3 32 32 H 1.09002 * 109.47276 * 239.99630 * 2 1 3 33 33 H 1.09000 * 109.47012 * 119.99760 * 2 1 3 34 34 H 1.08993 * 109.47017 * 304.99936 * 5 3 2 35 35 H 1.09001 * 109.46933 * 64.99577 * 5 3 2 36 36 H 0.97004 * 119.99982 * 0.02562 * 6 5 3 37 37 H 1.08001 * 120.04975 * 359.95886 * 10 9 7 38 38 H 1.08007 * 119.85198 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.80770 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.95900 * 180.02562 * 13 12 11 41 41 H 0.96697 * 114.00703 * 270.25631 * 15 14 13 42 42 H 1.00899 * 111.00373 * 189.47610 * 16 3 2 43 43 H 1.09007 * 109.47161 * 302.17934 * 17 16 3 44 44 H 1.09005 * 109.47421 * 62.17982 * 17 16 3 45 45 H 0.97001 * 119.99789 * 359.97438 * 20 18 17 46 46 H 0.97002 * 119.99932 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8623 5 6 3.5682 1.4431 -0.0746 6 7 4.0624 2.8170 0.0454 7 6 5.3871 3.0624 0.0069 8 8 6.1720 2.1435 -0.1269 9 6 5.8849 4.4460 0.1284 10 6 4.9866 5.5048 0.2828 11 6 5.4578 6.7945 0.3962 12 6 6.8195 7.0473 0.3572 13 6 7.7181 6.0103 0.2051 14 6 7.2616 4.7050 0.0953 15 8 8.1437 3.6846 -0.0487 16 7 1.6097 2.1141 1.2335 17 6 2.2439 1.5078 2.4118 18 6 1.7387 2.1860 3.6590 19 8 0.9295 3.0856 3.5748 20 7 2.1860 1.7930 4.8682 21 6 1.7260 2.4096 6.0029 22 1 1.0055 3.2106 5.9280 23 6 2.1868 2.0040 7.2494 24 7 3.0631 1.0290 7.3407 25 14 1.5605 2.8447 8.7956 26 1 0.0875 2.6798 8.8865 27 1 2.2021 2.2322 9.9865 28 1 1.8945 4.2906 8.7427 29 1 -0.3633 0.5927 -0.8396 30 1 -0.3633 -1.0234 -0.0935 31 1 -0.3634 0.4308 0.9331 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9719 0.8395 0.7382 35 1 3.8855 1.0250 -1.0299 36 1 3.4363 3.5500 0.1533 37 1 3.9242 5.3126 0.3130 38 1 4.7626 7.6124 0.5159 39 1 7.1801 8.0613 0.4464 40 1 8.7781 6.2151 0.1760 41 1 8.3613 3.4795 -0.9683 42 1 1.7983 3.1044 1.1909 43 1 1.9987 0.4464 2.4506 44 1 3.3252 1.6287 2.3450 45 1 2.8329 1.0733 4.9355 46 1 3.3850 0.7462 8.2110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481791535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:41 Heat of formation + Delta-G solvation = -86.320681 kcal Electronic energy + Delta-G solvation = -28978.373541 eV Core-core repulsion = 24868.176661 eV Total energy + Delta-G solvation = -4110.196880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65180 -39.22357 -38.28330 -37.18867 -36.85596 -34.11003 -33.86877 -31.97671 -31.60426 -31.16717 -30.04508 -28.48763 -26.54380 -24.53721 -24.12194 -23.15568 -22.44518 -20.69762 -20.21782 -19.12026 -18.72181 -17.90153 -17.79449 -16.81955 -16.41203 -15.96841 -15.45520 -15.27724 -15.24250 -15.12919 -14.50688 -14.34937 -14.24512 -14.03540 -13.78700 -13.61721 -13.42404 -13.18738 -12.72766 -12.54490 -12.41067 -12.14945 -11.96395 -11.90712 -11.64479 -11.45565 -11.27975 -11.00577 -10.94721 -10.86009 -10.58062 -10.43244 -10.19730 -9.86665 -9.48390 -9.38367 -9.16511 -8.92047 -8.49363 -8.09528 -7.94537 -6.39602 -3.80757 0.55353 0.97172 2.72557 2.97941 3.20944 3.26797 3.30836 3.52110 3.91953 3.97096 4.09269 4.31627 4.46260 4.50090 4.66568 4.70748 4.86559 5.02694 5.07139 5.11689 5.20389 5.27776 5.36172 5.41709 5.51906 5.52890 5.61434 5.77140 5.80849 5.90508 5.91504 5.99163 6.01841 6.08422 6.10927 6.22657 6.28388 6.31281 6.42886 6.54635 7.12729 7.32398 7.50539 7.53314 7.56352 8.07220 8.11478 8.62593 9.19203 9.56032 10.07102 10.77959 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008077 B = 0.003558 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3465.733103 B = 7868.606877 C =10032.254639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.081 3.919 6 N -0.726 5.726 7 C 0.559 3.441 8 O -0.522 6.522 9 C -0.166 4.166 10 C -0.068 4.068 11 C -0.136 4.136 12 C -0.078 4.078 13 C -0.158 4.158 14 C 0.168 3.832 15 O -0.477 6.477 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.441 3.559 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.393 0.607 42 H 0.343 0.657 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 6.107 -19.480 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.044 4.044 6 N -0.380 5.380 7 C 0.347 3.653 8 O -0.399 6.399 9 C -0.170 4.170 10 C -0.087 4.087 11 C -0.154 4.154 12 C -0.096 4.096 13 C -0.177 4.177 14 C 0.121 3.879 15 O -0.287 6.287 16 N -0.283 5.283 17 C -0.090 4.090 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.233 0.767 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.251 0.749 42 H 0.163 0.837 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.572 5.541 -18.778 20.356 hybrid contribution 0.827 0.595 0.476 1.124 sum 6.399 6.136 -18.302 20.336 Atomic orbital electron populations 1.21616 0.94583 1.00576 1.03089 1.21500 0.97358 0.94240 1.02030 1.21996 0.90292 0.97301 0.93904 0.89331 1.22208 0.96500 0.82908 1.02807 1.45882 1.07080 1.09866 1.75136 1.18029 0.82180 0.88271 0.76850 1.90804 1.55304 1.45404 1.48341 1.20424 0.93967 0.93792 1.08817 1.21288 0.99284 0.92201 0.95913 1.21146 0.95898 0.96827 1.01530 1.21251 0.93062 0.99207 0.96087 1.21471 1.00912 0.91496 1.03812 1.18505 0.86915 0.87124 0.95338 1.84778 1.61380 1.50900 1.31666 1.60225 1.60842 1.07299 0.99961 1.21785 0.96642 1.00046 0.90480 1.19780 0.86175 0.87096 0.84312 1.90512 1.36807 1.33093 1.86527 1.41857 1.39672 1.33695 1.04637 1.19635 1.23533 1.16708 0.83145 0.88000 1.25261 0.96544 0.96694 0.99366 1.69610 1.30623 1.27908 1.26015 0.85928 0.78943 0.79219 0.80180 1.19875 1.20969 1.19948 0.93214 0.93532 0.91007 0.91794 0.91427 0.90705 0.91069 0.76734 0.85190 0.84908 0.85074 0.84723 0.74896 0.83735 0.89277 0.93488 0.77502 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.71 37.16 0.36 -1.23 16 2 C -0.11 -1.21 5.29 -26.73 -0.14 -1.35 16 3 C 0.08 0.84 2.73 -67.71 -0.18 0.66 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.08 0.95 4.47 -4.04 -0.02 0.94 16 6 N -0.73 -8.65 5.27 -61.35 -0.32 -8.98 16 7 C 0.56 7.94 7.76 -12.47 -0.10 7.85 16 8 O -0.52 -9.00 15.16 -16.59 -0.25 -9.25 16 9 C -0.17 -2.08 5.89 -104.84 -0.62 -2.69 16 10 C -0.07 -0.70 9.53 -39.20 -0.37 -1.07 16 11 C -0.14 -1.19 10.02 -39.63 -0.40 -1.59 16 12 C -0.08 -0.64 10.03 -39.53 -0.40 -1.04 16 13 C -0.16 -1.51 9.98 -39.47 -0.39 -1.90 16 14 C 0.17 2.02 6.72 -38.69 -0.26 1.76 16 15 O -0.48 -5.95 11.58 -40.52 -0.47 -6.42 16 16 N -0.65 -9.48 5.38 -107.99 -0.58 -10.06 16 17 C 0.04 0.74 5.32 -4.98 -0.03 0.72 16 18 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 19 O -0.58 -15.50 15.83 5.54 0.09 -15.41 16 20 N -0.56 -14.42 5.29 -10.97 -0.06 -14.47 16 21 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 34 H 0.07 1.03 6.68 -51.93 -0.35 0.68 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 4.06 5.26 -40.82 -0.21 3.85 16 37 H 0.13 1.10 6.40 -52.49 -0.34 0.77 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.39 3.18 9.06 45.56 0.41 3.60 16 42 H 0.34 4.99 7.24 -39.29 -0.28 4.70 16 43 H 0.09 1.46 6.30 -51.92 -0.33 1.14 16 44 H 0.05 0.81 6.41 -51.93 -0.33 0.47 16 45 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 382.68 15.07 5.77 5.77 Total: -1.00 -35.17 382.68 -8.38 -43.55 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -5.38 Total: 20.03 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.87 Total: 3.21 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.24 Total: -57.72 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.63 Total: -31.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.17 -8.38 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481791535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.775 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds