Wall clock time and date at job start Tue Mar 31 2020 19:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47316 * 2 1 4 4 H 1.09001 * 109.46641 * 302.96447 * 3 2 1 5 5 C 1.53001 * 109.47202 * 182.96470 * 3 2 1 6 6 N 1.46498 * 109.47022 * 184.99444 * 5 3 2 7 7 C 1.34778 * 119.99756 * 179.97438 * 6 5 3 8 8 O 1.21586 * 120.00337 * 359.97438 * 7 6 5 9 9 C 1.47541 * 119.99820 * 180.02562 * 7 6 5 10 10 C 1.39706 * 120.18943 * 359.97438 * 9 7 6 11 11 C 1.37785 * 119.90552 * 179.97438 * 10 9 7 12 12 C 1.38551 * 120.30445 * 0.02562 * 11 10 9 13 13 C 1.38053 * 120.38554 * 359.97438 * 12 11 10 14 14 C 1.38717 * 120.08673 * 359.74425 * 13 12 11 15 15 O 1.35649 * 120.15189 * 180.27418 * 14 13 12 16 16 N 1.46896 * 109.47253 * 62.95980 * 3 2 1 17 17 C 1.46904 * 110.99660 * 65.52663 * 16 3 2 18 18 C 1.50694 * 109.47075 * 182.18076 * 17 16 3 19 19 O 1.21296 * 120.00093 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00286 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00453 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00065 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00191 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46777 * 60.00367 * 25 23 21 27 27 H 1.48501 * 109.47008 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47225 * 300.00118 * 25 23 21 29 29 H 1.09006 * 109.46861 * 54.78101 * 1 2 3 30 30 H 1.09000 * 109.47187 * 174.77820 * 1 2 3 31 31 H 1.09005 * 109.47199 * 294.78334 * 1 2 3 32 32 H 1.09002 * 109.47276 * 239.99630 * 2 1 3 33 33 H 1.09000 * 109.47012 * 119.99760 * 2 1 3 34 34 H 1.08993 * 109.47017 * 304.99936 * 5 3 2 35 35 H 1.09001 * 109.46933 * 64.99577 * 5 3 2 36 36 H 0.97004 * 119.99982 * 0.02562 * 6 5 3 37 37 H 1.08001 * 120.04975 * 359.95886 * 10 9 7 38 38 H 1.08007 * 119.85198 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.80770 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.95900 * 180.02562 * 13 12 11 41 41 H 0.96697 * 114.00703 * 270.25631 * 15 14 13 42 42 H 1.00899 * 111.00373 * 189.47610 * 16 3 2 43 43 H 1.09007 * 109.47161 * 302.17934 * 17 16 3 44 44 H 1.09005 * 109.47421 * 62.17982 * 17 16 3 45 45 H 0.97001 * 119.99789 * 359.97438 * 20 18 17 46 46 H 0.97002 * 119.99932 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8623 5 6 3.5682 1.4431 -0.0746 6 7 4.0624 2.8170 0.0454 7 6 5.3871 3.0624 0.0069 8 8 6.1720 2.1435 -0.1269 9 6 5.8849 4.4460 0.1284 10 6 4.9866 5.5048 0.2828 11 6 5.4578 6.7945 0.3962 12 6 6.8195 7.0473 0.3572 13 6 7.7181 6.0103 0.2051 14 6 7.2616 4.7050 0.0953 15 8 8.1437 3.6846 -0.0487 16 7 1.6097 2.1141 1.2335 17 6 2.2439 1.5078 2.4118 18 6 1.7387 2.1860 3.6590 19 8 0.9295 3.0856 3.5748 20 7 2.1860 1.7930 4.8682 21 6 1.7260 2.4096 6.0029 22 1 1.0055 3.2106 5.9280 23 6 2.1868 2.0040 7.2494 24 7 3.0631 1.0290 7.3407 25 14 1.5605 2.8447 8.7956 26 1 0.0875 2.6798 8.8865 27 1 2.2021 2.2322 9.9865 28 1 1.8945 4.2906 8.7427 29 1 -0.3633 0.5927 -0.8396 30 1 -0.3633 -1.0234 -0.0935 31 1 -0.3634 0.4308 0.9331 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9719 0.8395 0.7382 35 1 3.8855 1.0250 -1.0299 36 1 3.4363 3.5500 0.1533 37 1 3.9242 5.3126 0.3130 38 1 4.7626 7.6124 0.5159 39 1 7.1801 8.0613 0.4464 40 1 8.7781 6.2151 0.1760 41 1 8.3613 3.4795 -0.9683 42 1 1.7983 3.1044 1.1909 43 1 1.9987 0.4464 2.4506 44 1 3.3252 1.6287 2.3450 45 1 2.8329 1.0733 4.9355 46 1 3.3850 0.7462 8.2110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481791535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:40 Heat of formation + Delta-G solvation = -113.555077 kcal Electronic energy + Delta-G solvation = -28979.554513 eV Core-core repulsion = 24868.176661 eV Total energy + Delta-G solvation = -4111.377852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58642 -40.45694 -39.69021 -38.48928 -37.69098 -35.96912 -35.09142 -33.35676 -33.00800 -32.41242 -30.81402 -29.60419 -28.04393 -26.12664 -25.24613 -23.99513 -23.25380 -21.85197 -21.42747 -20.60493 -19.88687 -19.59048 -18.70054 -18.29728 -17.37212 -17.08450 -16.83592 -16.44603 -16.26014 -16.14486 -16.01840 -15.80962 -15.56816 -15.15586 -15.05560 -14.76397 -14.48932 -14.36412 -13.97609 -13.75762 -13.47666 -13.34009 -13.19166 -13.10444 -12.87505 -12.69844 -12.65497 -12.43524 -12.28078 -12.13589 -11.83688 -11.75703 -11.54251 -11.48744 -10.89519 -10.36325 -10.31207 -10.02476 -10.01930 -9.70278 -9.39553 -8.46774 -5.96130 -0.26083 0.23492 1.39189 1.40615 1.52067 1.78705 2.01561 2.04810 2.28411 2.70775 2.90921 3.20161 3.20879 3.49378 3.59461 3.69255 3.82204 4.01347 4.07208 4.18206 4.28626 4.32632 4.36899 4.39144 4.44074 4.55791 4.63208 4.67514 4.74928 4.84939 4.93474 4.98297 5.17825 5.19918 5.28597 5.29067 5.38173 5.39736 5.40490 5.58429 5.75972 5.85084 6.05676 6.33441 6.38225 6.58083 6.77134 7.09208 7.11342 7.54886 8.09114 8.70528 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008077 B = 0.003558 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3465.733103 B = 7868.606877 C =10032.254639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.086 3.914 4 H 0.115 0.885 5 C 0.085 3.915 6 N -0.717 5.717 7 C 0.554 3.446 8 O -0.563 6.563 9 C -0.194 4.194 10 C -0.074 4.074 11 C -0.138 4.138 12 C -0.069 4.069 13 C -0.162 4.162 14 C 0.145 3.855 15 O -0.498 6.498 16 N -0.657 5.657 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.082 0.918 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.405 0.595 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.406 0.594 42 H 0.344 0.656 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.393 0.607 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 7.420 -20.247 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.024 4.024 4 H 0.132 0.868 5 C -0.040 4.040 6 N -0.371 5.371 7 C 0.342 3.658 8 O -0.443 6.443 9 C -0.198 4.198 10 C -0.093 4.093 11 C -0.156 4.156 12 C -0.087 4.087 13 C -0.180 4.180 14 C 0.099 3.901 15 O -0.311 6.311 16 N -0.289 5.289 17 C -0.069 4.069 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.265 0.735 42 H 0.163 0.837 43 H 0.119 0.881 44 H 0.069 0.931 45 H 0.226 0.774 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.332 6.853 -19.576 21.415 hybrid contribution 0.885 0.232 0.624 1.107 sum 6.217 7.085 -18.952 21.167 Atomic orbital electron populations 1.21565 0.94827 1.01211 1.01868 1.21537 0.97009 0.93872 1.02721 1.22074 0.89756 0.97703 0.92842 0.86763 1.22173 0.96656 0.82619 1.02544 1.45831 1.06703 1.10267 1.74251 1.18421 0.82434 0.88800 0.76117 1.90767 1.56291 1.46675 1.50526 1.20473 0.94765 0.93379 1.11184 1.21511 0.99670 0.92423 0.95700 1.21532 0.96807 0.96827 1.00428 1.21688 0.92700 1.00408 0.93937 1.21719 1.02244 0.90692 1.03338 1.18851 0.86879 0.87999 0.96366 1.84724 1.61603 1.51619 1.33122 1.60221 1.60870 1.07517 1.00254 1.21526 0.96579 1.00003 0.88775 1.20782 0.84868 0.86269 0.85335 1.90480 1.38038 1.34469 1.87251 1.41959 1.40178 1.34010 1.05053 1.19654 1.24461 1.17393 0.84771 0.89976 1.26079 0.96371 0.97079 1.01867 1.69688 1.31120 1.28621 1.26968 0.84978 0.78492 0.78271 0.76548 1.19481 1.19691 1.19544 0.91959 0.92518 0.94136 0.89221 0.92672 0.92819 0.89976 0.75707 0.83986 0.82323 0.81751 0.82938 0.73459 0.83678 0.88081 0.93101 0.77404 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.71 71.98 0.70 -2.17 16 2 C -0.11 -2.21 5.29 30.59 0.16 -2.05 16 3 C 0.09 1.76 2.73 44.92 0.12 1.88 16 4 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.09 1.93 4.47 86.38 0.39 2.32 16 6 N -0.72 -16.79 5.27 -466.27 -2.46 -19.24 16 7 C 0.55 16.00 7.76 86.70 0.67 16.67 16 8 O -0.56 -20.07 15.16 16.93 0.26 -19.81 16 9 C -0.19 -4.87 5.89 -20.01 -0.12 -4.99 16 10 C -0.07 -1.44 9.53 22.52 0.21 -1.23 16 11 C -0.14 -2.10 10.02 22.24 0.22 -1.87 16 12 C -0.07 -0.96 10.03 22.30 0.22 -0.74 16 13 C -0.16 -2.85 9.98 22.34 0.22 -2.63 16 14 C 0.15 3.51 6.72 22.84 0.15 3.66 16 15 O -0.50 -12.89 11.58 -68.71 -0.80 -13.69 16 16 N -0.66 -18.55 5.38 -495.56 -2.66 -21.21 16 17 C 0.06 2.20 5.32 85.55 0.46 2.66 16 18 C 0.44 20.96 7.82 87.65 0.69 21.64 16 19 O -0.62 -33.21 15.83 -3.08 -0.05 -33.26 16 20 N -0.58 -30.22 5.29 -306.99 -1.62 -31.84 16 21 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 23 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 24 N -0.92 -51.30 13.05 21.66 0.28 -51.01 16 25 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 1.10 7.85 -2.38 -0.02 1.08 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.23 6.36 -2.39 -0.02 1.21 16 34 H 0.05 1.47 6.68 -2.39 -0.02 1.45 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 7.94 5.26 -92.71 -0.49 7.45 16 37 H 0.14 2.24 6.40 -2.91 -0.02 2.22 16 38 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.41 7.07 9.06 -74.06 -0.67 6.40 16 42 H 0.34 9.68 7.24 -89.70 -0.65 9.03 16 43 H 0.10 3.30 6.30 -2.38 -0.02 3.29 16 44 H 0.05 1.75 6.41 -2.38 -0.02 1.74 16 45 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 46 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -77.71 382.68 -1.11 -78.83 By element: Atomic # 1 Polarization: 52.71 SS G_CDS: -1.48 Total: 51.23 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.38 Total: 14.51 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -6.46 Total: -123.31 kcal Atomic # 8 Polarization: -66.17 SS G_CDS: -0.59 Total: -66.75 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -77.71 -1.11 -78.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481791535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.728 kcal (2) G-P(sol) polarization free energy of solvation -77.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds