Wall clock time and date at job start Tue Mar 31 2020 19:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21588 * 119.99883 * 359.97438 * 7 6 5 9 9 C 1.47533 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.39709 * 120.19110 * 359.97438 * 9 7 6 11 11 C 1.37790 * 119.91057 * 179.97438 * 10 9 7 12 12 C 1.38551 * 120.29663 * 0.02562 * 11 10 9 13 13 C 1.38053 * 120.39255 * 359.97438 * 12 11 10 14 14 C 1.38714 * 120.08160 * 359.74185 * 13 12 11 15 15 O 1.35659 * 120.14635 * 180.28269 * 14 13 12 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47240 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46831 * 120.00423 * 25 23 21 28 28 H 1.48493 * 109.47426 * 240.00507 * 25 23 21 29 29 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 30 30 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 31 31 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08008 * 120.04275 * 359.95347 * 10 9 7 38 38 H 1.07994 * 119.85178 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.80208 * 179.97438 * 12 11 10 40 40 H 1.07995 * 119.95787 * 180.02562 * 13 12 11 41 41 H 0.96705 * 113.99560 * 270.24513 * 15 14 13 42 42 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 43 43 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 44 44 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 45 45 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 46 46 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1638 2.1464 0.2829 9 6 5.8878 4.4449 -0.0163 10 6 4.9967 5.5012 -0.2216 11 6 5.4724 6.7897 -0.3324 12 6 6.8314 7.0433 -0.2415 13 6 7.7229 6.0089 -0.0387 14 6 7.2611 4.7063 0.0809 15 8 8.1354 3.6896 0.2859 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 1.3992 4.0970 -8.4619 27 1 3.4388 3.2441 -9.4579 28 1 1.3587 2.0263 -9.7236 29 1 -0.3633 -1.0274 -0.0205 30 1 -0.3633 0.4961 0.8999 31 1 -0.3632 0.5314 -0.8797 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 3.9365 5.3080 -0.2938 38 1 4.7827 7.6055 -0.4907 39 1 7.1955 8.0562 -0.3299 40 1 8.7808 6.2146 0.0314 41 1 8.4707 3.2891 -0.5279 42 1 0.6569 2.1788 -1.3353 43 1 1.7652 0.3910 -2.4816 44 1 3.2964 1.2785 -2.2916 45 1 2.8442 0.8531 -4.9109 46 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481791536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:42 Heat of formation + Delta-G solvation = -115.137012 kcal Electronic energy + Delta-G solvation = -28961.559859 eV Core-core repulsion = 24850.113409 eV Total energy + Delta-G solvation = -4111.446450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45955 -40.41410 -39.61434 -38.51167 -37.63989 -35.95083 -35.12859 -33.30868 -32.78902 -32.39721 -30.76787 -29.61053 -28.10244 -26.11641 -25.17102 -23.96835 -23.21664 -21.79621 -21.33590 -20.63772 -19.90059 -19.42148 -18.47751 -18.31939 -17.30278 -17.10650 -16.66844 -16.50866 -16.12274 -16.05557 -15.96131 -15.82861 -15.60346 -15.21749 -15.08004 -14.80024 -14.51199 -14.25100 -14.03512 -13.57976 -13.53390 -13.26813 -13.16119 -13.13941 -12.90586 -12.72654 -12.64758 -12.39851 -12.28959 -12.11611 -11.84626 -11.74159 -11.68110 -11.49895 -10.81370 -10.34047 -10.19131 -10.00637 -9.91912 -9.65183 -9.34846 -8.46288 -5.94938 -0.20258 0.27502 1.36350 1.41446 1.55609 1.87611 2.06203 2.18656 2.29273 2.74372 2.93822 3.21137 3.27779 3.51934 3.69631 3.75420 3.86287 4.02212 4.11007 4.15263 4.27767 4.34729 4.38477 4.42758 4.46241 4.52061 4.56729 4.70039 4.78972 4.79240 4.90131 4.92754 5.11462 5.23915 5.25013 5.32660 5.37534 5.41228 5.44416 5.45369 5.79489 5.87259 6.08072 6.40475 6.57327 6.59907 6.76705 7.13180 7.23040 7.56983 8.11589 8.71504 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007900 B = 0.003622 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.324309 B = 7729.439772 C = 9969.879941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.126 3.874 6 N -0.703 5.703 7 C 0.548 3.452 8 O -0.570 6.570 9 C -0.192 4.192 10 C -0.073 4.073 11 C -0.139 4.139 12 C -0.070 4.070 13 C -0.161 4.161 14 C 0.143 3.857 15 O -0.497 6.497 16 N -0.664 5.664 17 C 0.063 3.937 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.577 5.577 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.413 0.587 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.404 0.596 42 H 0.353 0.647 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.393 0.607 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 5.829 16.831 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.026 4.026 4 H 0.131 0.869 5 C 0.002 3.998 6 N -0.355 5.355 7 C 0.337 3.663 8 O -0.451 6.451 9 C -0.196 4.196 10 C -0.092 4.092 11 C -0.157 4.157 12 C -0.088 4.088 13 C -0.179 4.179 14 C 0.097 3.903 15 O -0.309 6.309 16 N -0.297 5.297 17 C -0.070 4.070 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.251 0.749 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.263 0.737 42 H 0.174 0.826 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.226 0.774 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.731 6.327 17.448 18.931 hybrid contribution -0.509 -1.061 -1.662 2.037 sum 3.222 5.267 15.785 16.950 Atomic orbital electron populations 1.21741 0.94645 1.02377 1.02010 1.22168 0.97162 0.96815 1.03434 1.21956 0.93237 0.94654 0.92757 0.86936 1.21479 0.93705 0.82938 1.01673 1.45734 1.06710 1.10760 1.72335 1.18439 0.82684 0.88691 0.76509 1.90746 1.56777 1.46739 1.50884 1.20505 0.95093 0.93649 1.10304 1.21518 0.99730 0.92537 0.95417 1.21514 0.96809 0.96734 1.00632 1.21669 0.92633 1.00341 0.94200 1.21704 1.02241 0.91135 1.02867 1.18841 0.87290 0.88726 0.95440 1.84674 1.60749 1.49301 1.36198 1.60156 1.18021 1.51713 0.99791 1.21509 1.01299 0.95361 0.88797 1.20810 0.83379 0.87531 0.85386 1.90482 1.46127 1.26327 1.87197 1.41967 1.50405 1.23447 1.05563 1.19706 1.34826 1.06309 0.85109 0.90087 1.26044 0.96109 0.97286 1.01954 1.69691 1.38007 1.20963 1.27765 0.84879 0.78219 0.78101 0.77211 1.19513 1.19837 1.19652 0.91894 0.91122 0.93918 0.92214 0.89487 0.90305 0.93024 0.74893 0.84291 0.82508 0.81714 0.82874 0.73673 0.82634 0.91590 0.89381 0.77375 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.71 71.98 0.70 -1.80 16 2 C -0.16 -2.76 5.17 30.60 0.16 -2.60 16 3 C 0.08 1.68 2.70 44.91 0.12 1.81 16 4 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 5 C 0.13 3.04 4.70 86.38 0.41 3.44 16 6 N -0.70 -18.69 5.34 -466.29 -2.49 -21.18 16 7 C 0.55 17.27 7.76 86.69 0.67 17.94 16 8 O -0.57 -21.42 15.16 16.93 0.26 -21.17 16 9 C -0.19 -5.31 5.89 -20.01 -0.12 -5.43 16 10 C -0.07 -1.65 9.54 22.52 0.21 -1.44 16 11 C -0.14 -2.45 10.02 22.24 0.22 -2.23 16 12 C -0.07 -1.11 10.03 22.30 0.22 -0.88 16 13 C -0.16 -3.11 9.98 22.34 0.22 -2.88 16 14 C 0.14 3.73 6.72 22.84 0.15 3.89 16 15 O -0.50 -13.64 11.58 -68.83 -0.80 -14.43 16 16 N -0.66 -18.09 5.36 -495.58 -2.65 -20.74 16 17 C 0.06 2.09 5.34 85.55 0.46 2.55 16 18 C 0.44 20.50 7.83 87.65 0.69 21.19 16 19 O -0.62 -32.55 15.90 -3.08 -0.05 -32.60 16 20 N -0.58 -29.59 5.29 -306.99 -1.62 -31.21 16 21 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 25 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.84 6.85 -2.38 -0.02 0.82 16 32 H 0.06 1.22 6.23 -2.39 -0.01 1.20 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.44 6.57 -2.38 -0.02 1.42 16 36 H 0.41 10.14 6.17 -92.70 -0.57 9.56 16 37 H 0.14 2.84 6.40 -2.91 -0.02 2.82 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 41 H 0.40 8.58 9.06 -74.05 -0.67 7.91 16 42 H 0.35 9.80 7.23 -89.70 -0.65 9.15 16 43 H 0.07 1.99 6.49 -2.39 -0.02 1.97 16 44 H 0.09 2.97 6.15 -2.38 -0.01 2.95 16 45 H 0.39 19.57 7.90 -92.70 -0.73 18.84 16 46 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -74.96 382.51 -1.20 -76.16 By element: Atomic # 1 Polarization: 56.47 SS G_CDS: -1.56 Total: 54.91 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.40 Total: 15.41 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.48 Total: -123.16 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -0.59 Total: -68.20 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.96 -1.20 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481791536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds