Wall clock time and date at job start Tue Mar 31 2020 19:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47074 * 2 1 4 4 H 1.08999 * 109.47709 * 54.99798 * 3 2 1 5 5 C 1.53001 * 109.46994 * 175.00072 * 3 2 1 6 6 N 1.46502 * 109.47197 * 175.00029 * 5 3 2 7 7 C 1.34775 * 120.00029 * 179.97438 * 6 5 3 8 8 O 1.21590 * 119.99880 * 359.97438 * 7 6 5 9 9 C 1.47538 * 120.00007 * 179.97438 * 7 6 5 10 10 C 1.39712 * 120.18919 * 359.96335 * 9 7 6 11 11 C 1.37783 * 119.90563 * 179.97438 * 10 9 7 12 12 C 1.38555 * 120.30103 * 0.02562 * 11 10 9 13 13 C 1.38048 * 120.39150 * 0.02562 * 12 11 10 14 14 C 1.38720 * 120.08271 * 359.95543 * 13 12 11 15 15 O 1.35649 * 120.14794 * 180.02562 * 14 13 12 16 16 C 1.42903 * 117.00189 * 0.02562 * 15 14 13 17 17 C 1.50699 * 109.47176 * 180.02562 * 16 15 14 18 18 N 1.34780 * 120.00294 * 180.02562 * 17 16 15 19 19 O 1.21280 * 120.00023 * 359.97438 * 17 16 15 20 20 N 1.46505 * 109.46969 * 294.99441 * 3 2 1 21 21 C 1.36931 * 119.99576 * 85.00365 * 20 3 2 22 22 H 1.08001 * 120.00582 * 359.97438 * 21 20 3 23 23 C 1.38819 * 119.99864 * 179.97438 * 21 20 3 24 24 N 1.31617 * 119.99796 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99992 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47036 * 89.99991 * 25 23 21 27 27 H 1.48499 * 109.46934 * 210.00105 * 25 23 21 28 28 H 1.48499 * 109.47125 * 329.99704 * 25 23 21 29 29 H 1.09000 * 109.46971 * 60.00230 * 1 2 3 30 30 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47084 * 300.00477 * 1 2 3 32 32 H 1.09000 * 109.47084 * 239.99523 * 2 1 3 33 33 H 1.09000 * 109.46971 * 119.99770 * 2 1 3 34 34 H 1.08990 * 109.47308 * 54.99621 * 5 3 2 35 35 H 1.09000 * 109.47105 * 294.99377 * 5 3 2 36 36 H 0.97006 * 119.99844 * 359.97438 * 6 5 3 37 37 H 1.07999 * 120.04497 * 0.03985 * 10 9 7 38 38 H 1.07996 * 119.85071 * 180.29584 * 11 10 9 39 39 H 1.08005 * 119.80213 * 179.97438 * 12 11 10 40 40 H 1.07993 * 119.95872 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46617 * 299.99637 * 16 15 14 42 42 H 1.09002 * 109.47395 * 59.99702 * 16 15 14 43 43 H 0.97007 * 119.99560 * 359.97438 * 18 17 16 44 44 H 0.96999 * 120.00259 * 180.02562 * 18 17 16 45 45 H 0.96996 * 120.00214 * 265.00418 * 20 3 2 46 46 H 0.97004 * 119.99713 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5649 1.4443 0.1257 6 7 4.0631 2.8168 0.0059 7 6 5.3857 3.0630 0.0868 8 8 6.1653 2.1461 0.2597 9 6 5.8875 4.4451 -0.0343 10 6 4.9953 5.5015 -0.2338 11 6 5.4703 6.7901 -0.3456 12 6 6.8298 7.0437 -0.2617 13 6 7.7225 6.0090 -0.0659 14 6 7.2619 4.7056 0.0492 15 8 8.1378 3.6880 0.2422 16 6 9.5232 4.0301 0.3179 17 6 10.3382 2.7807 0.5324 18 7 11.6796 2.8605 0.6357 19 8 9.7868 1.7035 0.6129 20 7 1.6525 2.0974 -1.2519 21 6 0.4158 2.6734 -1.3689 22 1 -0.2742 2.6445 -0.5385 23 6 0.0488 3.2944 -2.5549 24 7 0.8898 3.3300 -3.5668 25 14 -1.6387 4.0796 -2.7148 26 1 -1.5672 5.4987 -2.2835 27 1 -2.0829 4.0141 -4.1303 28 1 -2.6074 3.3499 -1.8579 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9954 0.8311 -0.6658 35 1 3.8499 1.0377 1.0961 36 1 3.4411 3.5483 -0.1316 37 1 3.9347 5.3085 -0.2991 38 1 4.7794 7.6066 -0.4949 39 1 7.1934 8.0568 -0.3509 40 1 8.7808 6.2146 -0.0020 41 1 9.8306 4.5088 -0.6119 42 1 9.6832 4.7159 1.1499 43 1 12.1206 3.7222 0.5717 44 1 12.2042 2.0563 0.7733 45 1 2.2720 2.1230 -1.9978 46 1 0.6331 3.7637 -4.3956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495016383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:27 Heat of formation + Delta-G solvation = -100.695552 kcal Electronic energy + Delta-G solvation = -28832.101901 eV Core-core repulsion = 24721.281680 eV Total energy + Delta-G solvation = -4110.820221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69447 -40.63722 -39.77015 -38.24937 -38.10211 -35.21157 -34.78108 -34.16079 -32.43840 -31.47283 -31.19362 -29.57151 -28.92083 -25.83747 -24.89634 -23.92300 -23.12603 -21.90481 -21.57461 -21.12622 -19.70337 -19.14295 -18.64133 -18.14968 -17.38756 -17.32771 -17.19121 -16.94259 -16.20789 -16.10840 -15.95489 -15.69374 -15.47069 -15.23811 -15.11062 -14.83676 -14.56142 -14.38716 -14.12646 -13.81171 -13.66470 -13.36104 -12.97663 -12.78226 -12.72720 -12.70551 -12.36539 -12.23170 -12.10477 -12.08087 -11.86495 -11.63493 -11.32970 -11.11005 -10.92968 -10.74550 -10.73834 -10.14658 -9.89321 -9.23649 -8.97060 -7.85118 -5.13197 -0.09929 0.41464 1.51332 1.51514 1.52794 1.60060 1.72895 1.96237 2.30185 2.61377 2.83100 2.88913 3.47798 3.70058 3.80223 3.88253 3.90397 3.96517 4.04760 4.12254 4.12474 4.30117 4.36262 4.43076 4.47804 4.53467 4.55335 4.72819 4.86976 4.89065 5.07931 5.12772 5.16902 5.20603 5.34151 5.49110 5.50384 5.58991 5.62945 5.71971 5.73543 5.84879 6.27892 6.33947 6.47944 6.66086 7.30771 7.33404 7.41606 8.12151 8.38957 9.37855 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.002982 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.122701 B = 9388.196717 C =10973.439898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.168 3.832 4 H 0.061 0.939 5 C 0.124 3.876 6 N -0.710 5.710 7 C 0.543 3.457 8 O -0.567 6.567 9 C -0.200 4.200 10 C -0.052 4.052 11 C -0.166 4.166 12 C -0.041 4.041 13 C -0.214 4.214 14 C 0.163 3.837 15 O -0.299 6.299 16 C 0.024 3.976 17 C 0.509 3.491 18 N -0.824 5.824 19 O -0.581 6.581 20 N -0.728 5.728 21 C -0.217 4.217 22 H 0.081 0.919 23 C -0.073 4.073 24 N -0.968 5.968 25 Si 0.961 3.039 26 H -0.287 1.287 27 H -0.305 1.305 28 H -0.272 1.272 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.408 0.592 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.424 0.576 44 H 0.412 0.588 45 H 0.371 0.629 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.446 10.841 10.310 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.059 3.941 4 H 0.079 0.921 5 C 0.000 4.000 6 N -0.362 5.362 7 C 0.332 3.668 8 O -0.448 6.448 9 C -0.203 4.203 10 C -0.071 4.071 11 C -0.184 4.184 12 C -0.058 4.058 13 C -0.232 4.232 14 C 0.115 3.885 15 O -0.210 6.210 16 C -0.054 4.054 17 C 0.294 3.706 18 N -0.392 5.392 19 O -0.459 6.459 20 N -0.368 5.368 21 C -0.348 4.348 22 H 0.099 0.901 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.792 3.208 26 H -0.214 1.214 27 H -0.232 1.232 28 H -0.197 1.197 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.191 0.809 40 H 0.193 0.807 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.256 0.744 44 H 0.245 0.755 45 H 0.203 0.797 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.253 9.418 10.552 24.703 hybrid contribution -0.717 0.361 -0.914 1.216 sum 19.536 9.779 9.638 23.879 Atomic orbital electron populations 1.21687 0.95583 1.00655 1.01911 1.21991 0.96909 0.97281 1.00900 1.20682 0.90371 0.93402 0.89670 0.92146 1.21529 0.94717 0.82862 1.00927 1.45859 1.06936 1.10458 1.72992 1.18621 0.82297 0.89296 0.76634 1.90836 1.56448 1.46839 1.50647 1.19437 0.92482 0.93319 1.15094 1.21367 0.98993 0.92630 0.94143 1.21383 0.97336 0.96045 1.03637 1.21624 0.91992 1.00486 0.91746 1.21618 1.03011 0.89667 1.08925 1.19283 0.88109 0.88130 0.92970 1.86417 1.16337 1.32382 1.85891 1.22923 0.79712 0.95902 1.06831 1.20571 0.84212 0.90101 0.75762 1.43428 1.05224 1.15191 1.75321 1.90871 1.72397 1.32139 1.50535 1.42582 1.15916 1.66122 1.12177 1.19506 0.92334 1.25385 0.97598 0.90119 1.25402 1.01076 1.03470 0.96550 1.69831 1.36867 1.50924 1.04333 0.85310 0.80895 0.78600 0.75988 1.21407 1.23238 1.19718 0.93125 0.92803 0.93057 0.93782 0.90884 0.93769 0.90832 0.75447 0.85372 0.82966 0.80890 0.80703 0.85365 0.84977 0.74381 0.75516 0.79696 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.18 71.98 0.66 -4.35 16 2 C -0.13 -4.64 5.61 30.59 0.17 -4.47 16 3 C 0.17 6.52 2.59 44.99 0.12 6.63 16 4 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 5 C 0.12 4.81 5.23 86.38 0.45 5.26 16 6 N -0.71 -27.63 5.34 -466.27 -2.49 -30.12 16 7 C 0.54 22.42 7.76 86.70 0.67 23.10 16 8 O -0.57 -27.82 15.16 16.92 0.26 -27.57 16 9 C -0.20 -6.72 5.89 -20.01 -0.12 -6.84 16 10 C -0.05 -1.48 9.54 22.52 0.21 -1.26 16 11 C -0.17 -3.36 10.02 22.24 0.22 -3.13 16 12 C -0.04 -0.60 10.03 22.30 0.22 -0.38 16 13 C -0.21 -3.62 9.03 22.34 0.20 -3.42 16 14 C 0.16 4.63 6.70 22.84 0.15 4.78 16 15 O -0.30 -9.50 7.74 -60.71 -0.47 -9.97 16 16 C 0.02 0.41 5.22 71.24 0.37 0.78 16 17 C 0.51 11.21 8.18 87.66 0.72 11.93 16 18 N -0.82 -7.57 8.87 -173.53 -1.54 -9.11 16 19 O -0.58 -21.88 17.34 16.01 0.28 -21.60 16 20 N -0.73 -34.66 4.51 -322.93 -1.46 -36.11 16 21 C -0.22 -11.11 7.75 84.04 0.65 -10.46 16 22 H 0.08 3.97 7.32 -2.91 -0.02 3.95 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 24 N -0.97 -57.64 13.06 21.65 0.28 -57.36 16 25 Si 0.96 44.70 29.55 68.60 2.03 46.72 16 26 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 H 0.05 2.15 5.99 -2.39 -0.01 2.14 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.41 15.45 6.17 -92.70 -0.57 14.88 16 37 H 0.13 3.74 6.40 -2.91 -0.02 3.72 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.18 1.28 6.30 -2.91 -0.02 1.26 16 41 H 0.13 1.18 7.66 -2.39 -0.02 1.17 16 42 H 0.13 1.10 7.66 -2.39 -0.02 1.08 16 43 H 0.42 -0.09 8.83 -92.70 -0.82 -0.90 16 44 H 0.41 3.50 8.93 -92.71 -0.83 2.67 16 45 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 46 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -88.17 385.54 0.19 -87.98 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -1.88 Total: 42.49 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.18 Total: 14.65 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -5.20 Total: -132.70 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: 0.06 Total: -59.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -88.17 0.19 -87.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495016383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.716 kcal (2) G-P(sol) polarization free energy of solvation -88.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds