Wall clock time and date at job start Tue Mar 31 2020 18:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 C 1.53004 * 109.47208 * 240.00115 * 2 1 3 5 5 O 1.45193 * 109.47077 * 120.00225 * 2 1 3 6 6 C 1.34635 * 117.00208 * 60.00006 * 5 2 1 7 7 O 1.21504 * 120.00046 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00029 * 180.02562 * 6 5 2 9 9 C 1.39421 * 119.99846 * 185.08894 * 8 6 5 10 10 C 1.39015 * 119.63580 * 174.92739 * 9 8 6 11 11 C 1.39557 * 118.93769 * 179.70370 * 10 9 8 12 12 C 1.48159 * 120.88647 * 180.25292 * 11 10 9 13 13 O 1.21511 * 120.00039 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00017 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99831 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46853 * 179.97438 * 15 14 12 17 17 C 1.50691 * 109.47091 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00301 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00264 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99410 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47135 * 120.00129 * 21 19 17 24 24 H 1.48503 * 109.46901 * 239.99585 * 21 19 17 25 25 C 1.39984 * 118.22608 * 0.26869 * 11 10 9 26 26 C 1.37995 * 119.15567 * 0.02562 * 25 11 10 27 27 N 1.31893 * 120.99122 * 0.02562 * 26 25 11 28 28 H 1.08993 * 109.47016 * 300.00232 * 1 2 3 29 29 H 1.09000 * 109.46932 * 59.99972 * 1 2 3 30 30 H 1.08997 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47096 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47265 * 299.99824 * 3 2 1 33 33 H 1.09001 * 109.46772 * 60.00072 * 3 2 1 34 34 H 1.08997 * 109.47119 * 300.00331 * 4 2 1 35 35 H 1.09000 * 109.47245 * 60.00105 * 4 2 1 36 36 H 1.09002 * 109.47039 * 179.97438 * 4 2 1 37 37 H 0.96995 * 120.00029 * 5.08534 * 8 6 5 38 38 H 1.08002 * 120.53482 * 359.97005 * 10 9 8 39 39 H 0.97003 * 119.99599 * 359.97438 * 14 12 11 40 40 H 1.08996 * 109.47132 * 299.99720 * 15 14 12 41 41 H 1.08996 * 109.46803 * 60.00502 * 15 14 12 42 42 H 1.09002 * 109.46912 * 300.00491 * 16 15 14 43 43 H 1.09003 * 109.46814 * 59.99967 * 16 15 14 44 44 H 0.96998 * 119.99350 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.41832 * 179.97438 * 25 11 10 46 46 H 1.07995 * 119.50437 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5035 8 7 2.0672 -2.6654 2.4171 9 6 1.7824 -4.0261 2.5233 10 6 2.3033 -4.7566 3.5851 11 6 2.0038 -6.1163 3.6807 12 6 2.5314 -6.9347 4.7974 13 8 3.2354 -6.4234 5.6456 14 7 2.2304 -8.2463 4.8725 15 6 2.7525 -9.0556 5.9765 16 6 2.2650 -10.4981 5.8263 17 6 2.8015 -11.3304 6.9622 18 1 3.4273 -10.8760 7.7160 19 6 2.4935 -12.6722 7.0391 20 7 1.7311 -13.2254 6.1213 21 14 3.1581 -13.7037 8.4475 22 1 3.9823 -12.8502 9.3403 23 1 2.0256 -14.2770 9.2185 24 1 3.9939 -14.8041 7.9036 25 6 1.1919 -6.6864 2.6931 26 6 0.7208 -5.8912 1.6684 27 7 1.0249 -4.6092 1.6090 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 2.5640 -2.2177 3.1196 38 1 2.9263 -4.2787 4.3267 39 1 1.6681 -8.6543 4.1956 40 1 3.8422 -9.0361 5.9575 41 1 2.3982 -8.6494 6.9238 42 1 1.1753 -10.5171 5.8454 43 1 2.6189 -10.9044 4.8788 44 1 1.5141 -14.1693 6.1756 45 1 0.9382 -7.7354 2.7321 46 1 0.0937 -6.3251 0.9037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528711084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:07 Heat of formation + Delta-G solvation = -97.310410 kcal Electronic energy + Delta-G solvation = -27681.419793 eV Core-core repulsion = 23570.746363 eV Total energy + Delta-G solvation = -4110.673430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32686 -41.47318 -40.27854 -38.32420 -36.69817 -36.19030 -35.01393 -34.81207 -33.74309 -31.66984 -30.96322 -28.35426 -28.28300 -27.28157 -25.84650 -24.78769 -23.70099 -22.84668 -21.70692 -21.04357 -19.68173 -19.31242 -18.52434 -17.94736 -17.43303 -17.25254 -17.05489 -16.64083 -16.58190 -16.32822 -16.28816 -15.66280 -15.52464 -15.13315 -15.12342 -14.78295 -14.67677 -14.48222 -14.28486 -13.33019 -13.27338 -13.22442 -13.06762 -12.96020 -12.90416 -12.85439 -12.65432 -12.51963 -12.34871 -12.26519 -11.91506 -11.72548 -11.51249 -11.38639 -11.33966 -11.13076 -11.02347 -10.59959 -10.34446 -10.09344 -9.49362 -8.23192 -6.32952 -0.38644 -0.05953 0.82008 1.41995 1.43709 1.56011 1.59827 1.89744 2.05092 2.43568 2.71520 2.81755 3.12221 3.44878 3.54113 3.74096 3.76142 3.79955 3.90356 3.94596 4.00561 4.45369 4.49585 4.50014 4.56655 4.63323 4.64435 4.74758 4.78194 4.85733 4.86169 4.89509 4.94302 4.98641 5.16385 5.19991 5.29697 5.32890 5.43199 5.47756 5.55423 5.59429 5.79297 6.01660 6.16624 6.47841 6.80314 6.82345 7.08143 7.27405 7.36389 8.88642 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042015 B = 0.001674 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.263754 B =16722.498870 C =17180.143358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.640 3.360 7 O -0.527 6.527 8 N -0.630 5.630 9 C 0.362 3.638 10 C -0.143 4.143 11 C -0.065 4.065 12 C 0.553 3.447 13 O -0.573 6.573 14 N -0.704 5.704 15 C 0.139 3.861 16 C 0.020 3.980 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.158 4.158 26 C 0.133 3.867 27 N -0.486 5.486 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.437 0.563 38 H 0.158 0.842 39 H 0.412 0.588 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.012 0.988 43 H 0.012 0.988 44 H 0.265 0.735 45 H 0.166 0.834 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 27.715 -14.974 31.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.393 3.607 7 O -0.411 6.411 8 N -0.285 5.285 9 C 0.131 3.869 10 C -0.167 4.167 11 C -0.077 4.077 12 C 0.340 3.660 13 O -0.454 6.454 14 N -0.355 5.355 15 C 0.016 3.984 16 C -0.017 4.017 17 C -0.584 4.584 18 H 0.078 0.922 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.179 4.179 26 C -0.024 4.024 27 N -0.202 5.202 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.278 0.722 38 H 0.176 0.824 39 H 0.250 0.750 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.184 0.816 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.317 28.312 -15.602 32.410 hybrid contribution 0.519 -1.414 1.430 2.077 sum -1.798 26.898 -14.173 30.457 Atomic orbital electron populations 1.22473 0.93840 1.03700 1.03730 1.22476 0.94663 0.92687 0.81152 1.21897 1.02508 0.90392 1.04473 1.22480 1.01627 1.02226 0.97448 1.86320 1.71376 1.22346 1.47827 1.18212 0.79162 0.81231 0.82056 1.91017 1.37981 1.69854 1.42259 1.41937 1.57816 1.06156 1.22574 1.17931 0.93679 0.83865 0.91383 1.21476 1.02655 0.93345 0.99200 1.20017 0.98514 0.93800 0.95321 1.18479 0.80239 0.82236 0.85080 1.90735 1.39640 1.72675 1.42316 1.46037 1.51800 1.08551 1.29069 1.21337 0.97754 0.91201 0.88127 1.19166 0.96179 0.89588 0.96798 1.21494 1.31692 0.94770 1.10467 0.92226 1.25834 0.95217 0.99227 0.98786 1.70057 1.37754 1.12826 1.35801 0.85422 0.78269 0.78446 0.79060 1.18974 1.20368 1.20359 1.22578 0.97803 1.03142 0.94424 1.23113 0.95640 0.86872 0.96782 1.67506 1.13176 1.13526 1.25967 0.91869 0.88971 0.92033 0.91129 0.87864 0.91042 0.92035 0.88956 0.92001 0.72236 0.82430 0.75016 0.92944 0.92940 0.96987 0.96991 0.92591 0.81611 0.78689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.37 71.98 0.60 -2.05 16 2 C 0.13 1.84 1.13 -10.79 -0.01 1.82 16 3 C -0.14 -1.12 8.85 71.98 0.64 -0.49 16 4 C -0.18 -2.71 8.37 71.98 0.60 -2.10 16 5 O -0.36 -6.76 9.94 -55.45 -0.55 -7.31 16 6 C 0.64 14.42 8.01 129.79 1.04 15.46 16 7 O -0.53 -14.44 10.14 19.83 0.20 -14.24 16 8 N -0.63 -12.34 5.40 -434.55 -2.34 -14.68 16 9 C 0.36 8.41 7.42 132.93 0.99 9.40 16 10 C -0.14 -3.31 9.51 22.77 0.22 -3.10 16 11 C -0.07 -1.65 5.91 -19.90 -0.12 -1.77 16 12 C 0.55 17.88 7.80 86.88 0.68 18.56 16 13 O -0.57 -22.47 16.44 -3.75 -0.06 -22.53 16 14 N -0.70 -22.98 5.51 -465.67 -2.57 -25.55 16 15 C 0.14 5.67 5.61 86.38 0.48 6.16 16 16 C 0.02 0.97 5.09 29.85 0.15 1.12 16 17 C -0.55 -29.64 9.11 25.60 0.23 -29.41 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.01 0.45 5.46 84.66 0.46 0.92 16 20 N -0.92 -52.99 13.29 21.45 0.28 -52.71 16 21 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.16 -3.16 9.61 22.64 0.22 -2.94 16 26 C 0.13 2.64 11.17 84.63 0.94 3.58 16 27 N -0.49 -12.22 7.85 -193.19 -1.52 -13.74 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.29 5.88 -2.39 -0.01 1.27 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 1.31 5.88 -2.39 -0.01 1.29 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.44 5.70 8.81 -92.71 -0.82 4.89 16 38 H 0.16 3.34 7.74 -2.91 -0.02 3.32 16 39 H 0.41 11.18 6.61 -92.71 -0.61 10.56 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.17 2.53 6.53 -2.91 -0.02 2.51 16 46 H 0.20 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -72.65 385.96 2.19 -70.46 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.41 Total: 20.26 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 7.13 Total: 15.18 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -6.14 Total: -106.68 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.41 Total: -44.08 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.65 2.19 -70.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528711084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.846 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds