Wall clock time and date at job start Tue Mar 31 2020 18:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 C 1.52997 * 109.47028 * 240.00570 * 2 1 3 5 5 O 1.45199 * 109.47342 * 120.00456 * 2 1 3 6 6 C 1.34763 * 116.99862 * 59.99978 * 5 2 1 7 7 O 1.21521 * 120.00114 * 359.97438 * 6 5 2 8 8 C 1.47285 * 119.99644 * 180.02562 * 6 5 2 9 9 C 1.40045 * 120.61815 * 5.87834 * 8 6 5 10 10 C 1.38306 * 118.36177 * 180.24050 * 9 8 6 11 11 C 1.38396 * 119.51578 * 359.46274 * 10 9 8 12 12 N 1.31836 * 121.23220 * 0.28235 * 11 10 9 13 13 C 1.32437 * 121.78099 * 359.97438 * 12 11 10 14 14 N 1.38225 * 119.82829 * 179.97438 * 13 12 11 15 15 N 1.40101 * 120.00213 * 354.34011 * 14 13 12 16 16 C 1.34779 * 120.00002 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99807 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.46705 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.46713 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99837 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99799 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99716 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46908 * 60.00321 * 24 22 20 26 26 H 1.48496 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47568 * 300.00393 * 24 22 20 28 28 H 1.09000 * 109.47261 * 299.99806 * 1 2 3 29 29 H 1.08998 * 109.47235 * 59.99737 * 1 2 3 30 30 H 1.08997 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47487 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47292 * 300.00228 * 3 2 1 33 33 H 1.09000 * 109.46905 * 59.99976 * 3 2 1 34 34 H 1.08997 * 109.47116 * 299.99802 * 4 2 1 35 35 H 1.09005 * 109.47583 * 59.99426 * 4 2 1 36 36 H 1.08996 * 109.47434 * 180.02562 * 4 2 1 37 37 H 1.08001 * 120.81387 * 359.97438 * 9 8 6 38 38 H 1.07998 * 120.23821 * 179.74635 * 10 9 8 39 39 H 1.08001 * 119.38237 * 180.25549 * 11 10 9 40 40 H 0.97005 * 120.00044 * 174.34239 * 14 13 12 41 41 H 0.96999 * 120.00201 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47184 * 300.00348 * 18 16 15 43 43 H 1.08994 * 109.46748 * 60.00610 * 18 16 15 44 44 H 1.09007 * 109.46840 * 299.99513 * 19 18 16 45 45 H 1.08999 * 109.47511 * 59.99965 * 19 18 16 46 46 H 0.97003 * 119.99424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6519 -1.9736 1.3383 7 8 0.9505 -2.5107 0.5039 8 6 2.1055 -2.7311 2.5172 9 6 2.8094 -2.0941 3.5468 10 6 3.2175 -2.8512 4.6298 11 6 2.9129 -4.2006 4.6720 12 7 2.2445 -4.7813 3.6952 13 6 1.8342 -4.1055 2.6328 14 7 1.1366 -4.7553 1.6319 15 7 0.9680 -6.1452 1.6842 16 6 0.2875 -6.7786 0.7084 17 8 -0.1786 -6.1456 -0.2151 18 6 0.1056 -8.2736 0.7651 19 6 -0.6960 -8.7363 -0.4533 20 6 -0.8783 -10.2311 -0.3964 21 1 -0.4636 -10.7948 0.4262 22 6 -1.5747 -10.8792 -1.3945 23 7 -2.0801 -10.1927 -2.3959 24 14 -1.8001 -12.7321 -1.3243 25 1 -2.5306 -13.0952 -0.0834 26 1 -2.5782 -13.1813 -2.5067 27 1 -0.4704 -13.3931 -1.3273 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 3.0318 -1.0385 3.4942 38 1 3.7658 -2.3918 5.4389 39 1 3.2290 -4.7889 5.5208 40 1 0.7639 -4.2490 0.8931 41 1 1.3405 -6.6514 2.4230 42 1 1.0817 -8.7587 0.7630 43 1 -0.4306 -8.5401 1.6758 44 1 -1.6722 -8.2512 -0.4515 45 1 -0.1594 -8.4698 -1.3639 46 1 -2.5697 -10.6487 -3.0983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557883115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:34 Heat of formation + Delta-G solvation = -54.317945 kcal Electronic energy + Delta-G solvation = -28648.007281 eV Core-core repulsion = 24539.198144 eV Total energy + Delta-G solvation = -4108.809137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39770 -40.18148 -39.16603 -37.33101 -35.92475 -34.43713 -33.49569 -32.74089 -32.34989 -30.97871 -28.92788 -27.71539 -27.63973 -25.66412 -25.34187 -23.31970 -22.42434 -21.72697 -20.19745 -19.86728 -18.40593 -17.90748 -17.47214 -16.98218 -16.58459 -16.29481 -15.75597 -15.41880 -15.24044 -15.18288 -14.69971 -14.51494 -14.42796 -14.26542 -13.87634 -13.48748 -13.41422 -12.83710 -12.79216 -12.70245 -12.50327 -12.22745 -12.20505 -12.19714 -11.74677 -11.65980 -11.48569 -11.20941 -10.91309 -10.68247 -10.63687 -10.36776 -10.23601 -9.99326 -9.87684 -9.73357 -9.52309 -9.34169 -9.11595 -8.32947 -7.54766 -5.96642 -4.01471 0.37435 1.14047 2.05026 2.30138 2.36148 3.10017 3.35041 3.39641 3.41367 3.59553 3.74909 4.29607 4.40868 4.45177 4.45971 4.46794 4.59756 4.61217 4.76076 5.03416 5.17637 5.18291 5.25990 5.38354 5.40862 5.43035 5.46100 5.53103 5.57649 5.64009 5.71861 5.81424 6.02159 6.06131 6.10540 6.15154 6.16980 6.30343 6.71380 6.90736 7.25084 7.54392 7.65730 7.73553 7.82519 8.01073 8.05424 8.36196 8.70580 9.06271 9.62055 11.14271 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002481 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.934074 B =11284.458925 C =13071.972272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.344 6.344 6 C 0.526 3.474 7 O -0.508 6.508 8 C -0.264 4.264 9 C 0.036 3.964 10 C -0.262 4.262 11 C 0.200 3.800 12 N -0.554 5.554 13 C 0.458 3.542 14 N -0.484 5.484 15 N -0.536 5.536 16 C 0.508 3.492 17 O -0.528 6.528 18 C -0.117 4.117 19 C 0.038 3.962 20 C -0.528 4.528 21 H 0.057 0.943 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.453 0.547 41 H 0.428 0.572 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.044 23.737 13.979 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.083 3.917 3 C -0.196 4.196 4 C -0.243 4.243 5 O -0.261 6.261 6 C 0.374 3.626 7 O -0.398 6.398 8 C -0.275 4.275 9 C 0.010 3.990 10 C -0.285 4.285 11 C 0.038 3.962 12 N -0.273 5.273 13 C 0.216 3.784 14 N -0.218 5.218 15 N -0.286 5.286 16 C 0.297 3.703 17 O -0.400 6.400 18 C -0.158 4.158 19 C 0.000 4.000 20 C -0.567 4.567 21 H 0.075 0.925 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.312 0.688 41 H 0.269 0.731 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.051 22.993 12.691 28.896 hybrid contribution 0.063 -0.101 0.022 0.121 sum 12.114 22.892 12.713 28.851 Atomic orbital electron populations 1.22515 0.93754 1.05167 1.02778 1.22237 0.94611 0.92118 0.82784 1.21850 1.02191 0.92465 1.03141 1.22517 1.01656 1.03536 0.96549 1.86556 1.69753 1.24301 1.45472 1.20664 0.76755 0.80463 0.84749 1.90497 1.36850 1.68867 1.43595 1.19077 1.16740 0.92606 0.99052 1.21597 0.87525 1.00148 0.89730 1.21760 1.09549 0.95600 1.01633 1.22761 0.87201 0.92449 0.93775 1.67317 1.18830 1.38856 1.02326 1.18166 0.87092 0.86328 0.86853 1.44766 1.54474 0.97331 1.25196 1.45633 1.59131 0.94842 1.29002 1.22128 0.76256 0.91661 0.80300 1.90721 1.47819 1.67912 1.33577 1.21887 1.03408 0.85797 1.04713 1.18940 0.95174 0.95374 0.90531 1.21150 1.35131 0.92277 1.08115 0.92466 1.25026 0.95594 0.98343 0.95414 1.69991 1.35970 1.35654 1.11150 0.86620 0.78195 0.85490 0.77436 1.20207 1.21304 1.20219 0.92005 0.90844 0.89497 0.91448 0.90196 0.91467 0.89479 0.90826 0.91981 0.83539 0.84203 0.81801 0.68814 0.73097 0.89542 0.89506 0.95607 0.95612 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 8.37 37.16 0.31 -1.50 16 2 C 0.12 1.12 1.13 -90.62 -0.10 1.02 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.19 -1.87 8.37 37.16 0.31 -1.56 16 5 O -0.34 -3.69 9.22 -40.66 -0.38 -4.06 16 6 C 0.53 6.75 7.19 34.41 0.25 6.99 16 7 O -0.51 -7.80 9.22 -19.28 -0.18 -7.98 16 8 C -0.26 -3.15 5.91 -104.66 -0.62 -3.77 16 9 C 0.04 0.30 9.73 -38.88 -0.38 -0.07 16 10 C -0.26 -1.83 10.08 -39.50 -0.40 -2.22 16 11 C 0.20 1.65 11.16 -17.49 -0.20 1.46 16 12 N -0.55 -6.63 9.36 -12.19 -0.11 -6.75 16 13 C 0.46 6.30 7.60 -155.20 -1.18 5.13 16 14 N -0.48 -7.97 6.28 31.27 0.20 -7.78 16 15 N -0.54 -8.89 6.28 31.22 0.20 -8.70 16 16 C 0.51 10.31 7.95 -10.98 -0.09 10.23 16 17 O -0.53 -12.97 15.82 5.56 0.09 -12.88 16 18 C -0.12 -2.37 5.64 -27.88 -0.16 -2.53 16 19 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 20 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 24 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.15 0.91 7.71 -52.49 -0.40 0.50 16 38 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.45 8.25 4.51 -182.69 -0.82 7.43 16 41 H 0.43 5.96 7.96 -182.60 -1.45 4.51 16 42 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -35.50 384.72 -9.45 -44.95 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.33 Total: 7.68 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.45 Total: -0.19 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 1.01 Total: -50.01 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.46 Total: -24.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.50 -9.45 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557883115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.371 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds