Wall clock time and date at job start Tue Mar 31 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 C 1.52997 * 109.47028 * 240.00570 * 2 1 3 5 5 O 1.45199 * 109.47342 * 120.00456 * 2 1 3 6 6 C 1.34763 * 116.99862 * 59.99978 * 5 2 1 7 7 O 1.21521 * 120.00114 * 359.97438 * 6 5 2 8 8 C 1.47285 * 119.99644 * 180.02562 * 6 5 2 9 9 C 1.40045 * 120.61815 * 5.87834 * 8 6 5 10 10 C 1.38306 * 118.36177 * 180.24050 * 9 8 6 11 11 C 1.38396 * 119.51578 * 359.46274 * 10 9 8 12 12 N 1.31836 * 121.23220 * 0.28235 * 11 10 9 13 13 C 1.32437 * 121.78099 * 359.97438 * 12 11 10 14 14 N 1.38225 * 119.82829 * 179.97438 * 13 12 11 15 15 N 1.40101 * 120.00213 * 354.34011 * 14 13 12 16 16 C 1.34779 * 120.00002 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99807 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.46705 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.46713 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99837 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99799 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99716 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46908 * 60.00321 * 24 22 20 26 26 H 1.48496 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47568 * 300.00393 * 24 22 20 28 28 H 1.09000 * 109.47261 * 299.99806 * 1 2 3 29 29 H 1.08998 * 109.47235 * 59.99737 * 1 2 3 30 30 H 1.08997 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47487 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47292 * 300.00228 * 3 2 1 33 33 H 1.09000 * 109.46905 * 59.99976 * 3 2 1 34 34 H 1.08997 * 109.47116 * 299.99802 * 4 2 1 35 35 H 1.09005 * 109.47583 * 59.99426 * 4 2 1 36 36 H 1.08996 * 109.47434 * 180.02562 * 4 2 1 37 37 H 1.08001 * 120.81387 * 359.97438 * 9 8 6 38 38 H 1.07998 * 120.23821 * 179.74635 * 10 9 8 39 39 H 1.08001 * 119.38237 * 180.25549 * 11 10 9 40 40 H 0.97005 * 120.00044 * 174.34239 * 14 13 12 41 41 H 0.96999 * 120.00201 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47184 * 300.00348 * 18 16 15 43 43 H 1.08994 * 109.46748 * 60.00610 * 18 16 15 44 44 H 1.09007 * 109.46840 * 299.99513 * 19 18 16 45 45 H 1.08999 * 109.47511 * 59.99965 * 19 18 16 46 46 H 0.97003 * 119.99424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6519 -1.9736 1.3383 7 8 0.9505 -2.5107 0.5039 8 6 2.1055 -2.7311 2.5172 9 6 2.8094 -2.0941 3.5468 10 6 3.2175 -2.8512 4.6298 11 6 2.9129 -4.2006 4.6720 12 7 2.2445 -4.7813 3.6952 13 6 1.8342 -4.1055 2.6328 14 7 1.1366 -4.7553 1.6319 15 7 0.9680 -6.1452 1.6842 16 6 0.2875 -6.7786 0.7084 17 8 -0.1786 -6.1456 -0.2151 18 6 0.1056 -8.2736 0.7651 19 6 -0.6960 -8.7363 -0.4533 20 6 -0.8783 -10.2311 -0.3964 21 1 -0.4636 -10.7948 0.4262 22 6 -1.5747 -10.8792 -1.3945 23 7 -2.0801 -10.1927 -2.3959 24 14 -1.8001 -12.7321 -1.3243 25 1 -2.5306 -13.0952 -0.0834 26 1 -2.5782 -13.1813 -2.5067 27 1 -0.4704 -13.3931 -1.3273 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 3.0318 -1.0385 3.4942 38 1 3.7658 -2.3918 5.4389 39 1 3.2290 -4.7889 5.5208 40 1 0.7639 -4.2490 0.8931 41 1 1.3405 -6.6514 2.4230 42 1 1.0817 -8.7587 0.7630 43 1 -0.4306 -8.5401 1.6758 44 1 -1.6722 -8.2512 -0.4515 45 1 -0.1594 -8.4698 -1.3639 46 1 -2.5697 -10.6487 -3.0983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557883115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:33 Heat of formation + Delta-G solvation = -77.699810 kcal Electronic energy + Delta-G solvation = -28649.021195 eV Core-core repulsion = 24539.198144 eV Total energy + Delta-G solvation = -4109.823051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.31247 -41.18269 -40.55742 -38.25762 -37.17604 -35.59757 -35.24888 -33.70930 -33.52615 -32.74892 -30.08900 -28.45139 -28.33283 -27.59266 -26.16449 -24.52948 -23.40007 -23.27032 -21.61883 -20.82186 -19.55218 -19.07141 -18.64529 -18.29227 -17.83168 -17.24595 -17.12198 -16.75168 -16.51092 -16.41436 -15.98419 -15.64670 -15.40943 -15.23218 -15.12283 -14.63609 -14.40082 -14.26360 -14.16884 -13.54884 -13.34834 -13.29514 -13.21620 -13.00144 -12.97650 -12.92094 -12.75805 -12.58866 -12.53007 -12.24697 -11.95775 -11.69350 -11.49638 -11.36052 -11.24871 -11.10467 -11.03677 -10.64786 -10.61120 -10.54312 -8.67495 -8.18428 -6.32812 -0.42988 0.35595 0.83445 1.40598 1.42719 1.47476 1.51381 1.52323 1.55141 2.42343 2.74505 2.80332 3.14790 3.44144 3.62128 3.64695 3.72747 3.73073 3.89737 3.97644 4.08540 4.29154 4.43011 4.49146 4.53445 4.53856 4.60437 4.69877 4.77682 4.84577 4.85590 4.95921 4.98057 5.08982 5.17697 5.20099 5.22177 5.33343 5.47998 5.51377 5.58718 5.71483 5.83018 6.09955 6.16311 6.43040 6.64675 6.84624 6.93152 7.27385 7.37408 8.94297 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002481 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.934074 B =11284.458925 C =13071.972272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.110 3.890 3 C -0.132 4.132 4 C -0.184 4.184 5 O -0.336 6.336 6 C 0.521 3.479 7 O -0.539 6.539 8 C -0.277 4.277 9 C 0.036 3.964 10 C -0.234 4.234 11 C 0.193 3.807 12 N -0.571 5.571 13 C 0.435 3.565 14 N -0.511 5.511 15 N -0.513 5.513 16 C 0.508 3.492 17 O -0.584 6.584 18 C -0.103 4.103 19 C 0.042 3.958 20 C -0.543 4.543 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.939 5.939 24 Si 0.977 3.023 25 H -0.261 1.261 26 H -0.289 1.289 27 H -0.261 1.261 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.174 0.826 38 H 0.185 0.815 39 H 0.204 0.796 40 H 0.442 0.558 41 H 0.441 0.559 42 H 0.115 0.885 43 H 0.115 0.885 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.443 24.381 17.576 33.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.075 3.925 3 C -0.189 4.189 4 C -0.242 4.242 5 O -0.253 6.253 6 C 0.370 3.630 7 O -0.432 6.432 8 C -0.288 4.288 9 C 0.011 3.989 10 C -0.256 4.256 11 C 0.033 3.967 12 N -0.291 5.291 13 C 0.196 3.804 14 N -0.248 5.248 15 N -0.262 5.262 16 C 0.297 3.703 17 O -0.462 6.462 18 C -0.144 4.144 19 C 0.005 3.995 20 C -0.580 4.580 21 H 0.099 0.901 22 C -0.206 4.206 23 N -0.579 5.579 24 Si 0.800 3.200 25 H -0.186 1.186 26 H -0.215 1.215 27 H -0.186 1.186 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.191 0.809 38 H 0.202 0.798 39 H 0.221 0.779 40 H 0.298 0.702 41 H 0.285 0.715 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.539 23.668 16.425 32.270 hybrid contribution -0.558 -0.108 -0.941 1.099 sum 13.981 23.561 15.484 31.470 Atomic orbital electron populations 1.22489 0.94335 1.03208 1.04025 1.22512 0.94371 0.93676 0.81951 1.21860 1.02657 0.89899 1.04499 1.22495 1.01988 1.01727 0.97946 1.86551 1.69427 1.23299 1.45994 1.21007 0.76232 0.81003 0.84751 1.90511 1.38306 1.69518 1.44829 1.19276 1.17629 0.92046 0.99836 1.21995 0.86442 1.01541 0.88960 1.22286 1.07062 0.94809 1.01443 1.23565 0.85821 0.93744 0.93584 1.67339 1.19584 1.39604 1.02558 1.18421 0.87793 0.87058 0.87104 1.44849 1.57023 0.96366 1.26604 1.45096 1.57298 0.95879 1.27935 1.21946 0.76328 0.91699 0.80308 1.90699 1.50581 1.68910 1.36004 1.21627 1.04080 0.86162 1.02546 1.18714 0.93572 0.95306 0.91950 1.21663 1.34795 0.92891 1.08688 0.90130 1.26172 0.95122 1.04438 0.94846 1.70186 1.37156 1.38251 1.12285 0.85329 0.78770 0.78114 0.77758 1.18572 1.21481 1.18583 0.91054 0.89276 0.93006 0.90679 0.88500 0.90457 0.93126 0.89237 0.91330 0.80899 0.79801 0.77903 0.70167 0.71500 0.86690 0.86670 0.99788 0.99782 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 8.37 71.98 0.60 -3.10 16 2 C 0.11 2.06 1.13 -10.79 -0.01 2.05 16 3 C -0.13 -1.41 8.85 71.98 0.64 -0.78 16 4 C -0.18 -3.88 8.37 71.98 0.60 -3.28 16 5 O -0.34 -7.11 9.22 -56.74 -0.52 -7.63 16 6 C 0.52 13.96 7.19 70.20 0.50 14.46 16 7 O -0.54 -18.28 9.22 19.77 0.18 -18.10 16 8 C -0.28 -6.53 5.91 -19.89 -0.12 -6.65 16 9 C 0.04 0.50 9.73 22.72 0.22 0.73 16 10 C -0.23 -2.16 10.08 22.32 0.23 -1.94 16 11 C 0.19 2.46 11.16 84.73 0.95 3.40 16 12 N -0.57 -12.79 9.36 -192.49 -1.80 -14.59 16 13 C 0.43 12.07 7.60 133.67 1.02 13.09 16 14 N -0.51 -17.88 6.28 -54.98 -0.35 -18.23 16 15 N -0.51 -17.64 6.28 -173.53 -1.09 -18.73 16 16 C 0.51 21.80 7.95 87.66 0.70 22.49 16 17 O -0.58 -31.31 15.82 -3.03 -0.05 -31.35 16 18 C -0.10 -4.27 5.64 29.85 0.17 -4.11 16 19 C 0.04 2.41 4.26 29.85 0.13 2.54 16 20 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 21 H 0.08 4.15 7.74 -2.91 -0.02 4.13 16 22 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 23 N -0.94 -60.57 13.29 21.45 0.28 -60.28 16 24 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.44 5.88 -2.39 -0.01 1.42 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 1.46 5.88 -2.39 -0.01 1.45 16 35 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.17 1.47 7.71 -2.91 -0.02 1.44 16 38 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 39 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 40 H 0.44 17.67 4.51 -214.81 -0.97 16.70 16 41 H 0.44 12.20 7.96 -213.32 -1.70 10.50 16 42 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 43 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 44 H -0.02 -1.05 8.10 -2.38 -0.02 -1.07 16 45 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 46 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -85.74 384.72 3.35 -82.39 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -1.65 Total: 31.77 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.31 Total: 7.98 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -2.95 Total: -111.83 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -0.39 Total: -57.08 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -85.74 3.35 -82.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557883115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.694 kcal (2) G-P(sol) polarization free energy of solvation -85.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds