Wall clock time and date at job start Tue Mar 31 2020 19:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.08998 * 109.46969 * 54.31457 * 3 2 1 5 5 C 1.53000 * 109.47138 * 174.31600 * 3 2 1 6 6 N 1.46505 * 109.46868 * 174.99803 * 5 3 2 7 7 C 1.34770 * 119.99438 * 180.02562 * 6 5 3 8 8 O 1.21778 * 120.00656 * 359.97438 * 7 6 5 9 9 C 1.41557 * 119.99765 * 180.02562 * 7 6 5 10 10 C 1.35624 * 120.00417 * 173.87214 * 9 7 6 11 11 C 1.41607 * 119.99897 * 350.22084 * 10 9 7 12 12 C 1.37941 * 126.10861 * 132.04956 * 11 10 9 13 13 C 1.40320 * 106.53157 * 179.72622 * 12 11 10 14 14 C 1.35157 * 107.20129 * 0.40998 * 13 12 11 15 15 O 1.34014 * 109.03482 * 359.58033 * 14 13 12 16 16 N 1.46897 * 109.46799 * 294.32023 * 3 2 1 17 17 C 1.46901 * 110.99966 * 297.98235 * 16 3 2 18 18 C 1.50701 * 109.47292 * 184.18990 * 17 16 3 19 19 O 1.21291 * 119.99996 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00221 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00384 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99246 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00209 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47154 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47166 * 120.00581 * 25 23 21 28 28 H 1.48506 * 109.47001 * 240.00263 * 25 23 21 29 29 H 1.09007 * 109.47217 * 185.55928 * 1 2 3 30 30 H 1.08994 * 109.47498 * 305.55604 * 1 2 3 31 31 H 1.09001 * 109.47324 * 65.55854 * 1 2 3 32 32 H 1.08989 * 109.47188 * 239.99865 * 2 1 3 33 33 H 1.09004 * 109.46768 * 119.99581 * 2 1 3 34 34 H 1.09000 * 109.46921 * 54.99964 * 5 3 2 35 35 H 1.08991 * 109.47080 * 294.99848 * 5 3 2 36 36 H 0.96995 * 119.99776 * 0.02562 * 6 5 3 37 37 H 1.07999 * 119.99912 * 353.86998 * 9 7 6 38 38 H 1.07996 * 120.00252 * 170.21232 * 10 9 7 39 39 H 1.08003 * 126.73738 * 0.02562 * 12 11 10 40 40 H 1.08000 * 126.40288 * 180.28894 * 13 12 11 41 41 H 1.08000 * 125.47847 * 179.84888 * 14 13 12 42 42 H 1.00901 * 111.00308 * 61.94133 * 16 3 2 43 43 H 1.08994 * 109.47340 * 304.19259 * 17 16 3 44 44 H 1.09001 * 109.46527 * 64.19409 * 17 16 3 45 45 H 0.97006 * 119.99574 * 0.02562 * 20 18 17 46 46 H 0.96994 * 120.00025 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 0.8347 5 6 3.5633 1.4449 0.1429 6 7 4.0628 2.8170 0.0232 7 6 5.3844 3.0634 0.1169 8 8 6.1634 2.1458 0.3016 9 6 5.8671 4.3892 0.0019 10 6 7.1792 4.6545 0.2193 11 6 8.0236 3.6546 0.7600 12 6 9.2648 3.2918 0.2798 13 6 9.7368 2.2735 1.1220 14 6 8.7844 2.0532 2.0553 15 8 7.7579 2.8868 1.8375 16 7 1.6654 2.0942 -1.2621 17 6 2.2862 1.4174 -2.4086 18 6 1.9641 2.1724 -3.6724 19 8 1.2847 3.1759 -3.6229 20 7 2.4310 1.7326 -4.8577 21 6 2.1384 2.4197 -6.0074 22 1 1.5334 3.3133 -5.9632 23 6 2.6202 1.9665 -7.2293 24 7 3.3560 0.8789 -7.2831 25 14 2.2210 2.9024 -8.7959 26 1 1.3823 4.0830 -8.4671 27 1 3.4817 3.3545 -9.4374 28 1 1.4820 2.0139 -9.7286 29 1 -0.3634 -1.0229 0.0996 30 1 -0.3634 0.5975 0.8360 31 1 -0.3634 0.4252 -0.9356 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0027 0.8286 -0.6414 35 1 3.8374 1.0422 1.1179 36 1 3.4423 3.5479 -0.1235 37 1 5.1904 5.1894 -0.2591 38 1 7.5802 5.6283 -0.0201 39 1 9.7755 3.7126 -0.5738 40 1 10.6833 1.7602 1.0387 41 1 8.8432 1.3258 2.8514 42 1 0.6624 2.1336 -1.3650 43 1 3.3668 1.3851 -2.2700 44 1 1.8990 0.4012 -2.4837 45 1 2.9741 0.9297 -4.8974 46 1 3.6926 0.5628 -8.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567948194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:43 Heat of formation + Delta-G solvation = -32.405502 kcal Electronic energy + Delta-G solvation = -28739.594297 eV Core-core repulsion = 24631.735355 eV Total energy + Delta-G solvation = -4107.858942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36806 -39.86106 -38.63293 -37.30370 -34.33659 -33.94431 -33.78519 -32.79839 -31.82293 -31.16358 -29.48677 -28.18690 -26.59534 -24.62001 -24.08208 -22.74980 -21.62285 -20.93356 -20.44551 -19.48360 -18.99689 -17.95558 -17.79063 -16.81584 -16.58668 -15.97345 -15.70973 -15.45947 -15.04513 -14.80736 -14.44215 -14.26042 -14.19704 -14.03360 -13.74735 -13.47820 -13.27493 -13.06195 -12.82755 -12.58253 -12.55059 -12.35710 -12.27509 -11.92545 -11.78029 -11.50639 -11.33247 -11.08944 -10.85385 -10.78614 -10.34577 -10.22136 -10.09899 -9.85570 -9.75589 -9.51442 -8.87034 -8.49875 -8.08269 -7.99240 -7.95565 -6.41091 -3.82105 0.60734 2.05065 2.69527 3.16253 3.16547 3.26746 3.33634 3.40968 3.52445 3.91307 4.10726 4.35317 4.64177 4.71722 4.82780 4.94495 4.98758 5.03910 5.09483 5.17052 5.25468 5.30023 5.30924 5.41823 5.57674 5.60791 5.72519 5.74803 5.77116 5.82409 5.87615 5.95997 5.96915 6.03007 6.08773 6.20530 6.23894 6.27507 6.54307 6.58382 7.14982 7.19548 7.55523 7.58012 7.71235 8.06725 8.38968 8.61528 9.18346 9.55091 10.06221 10.76681 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.003062 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.989498 B = 9142.943375 C =11255.340709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.127 3.873 6 N -0.708 5.708 7 C 0.536 3.464 8 O -0.536 6.536 9 C -0.189 4.189 10 C -0.006 4.006 11 C 0.021 3.979 12 C -0.189 4.189 13 C -0.220 4.220 14 C -0.027 4.027 15 O -0.143 6.143 16 N -0.658 5.658 17 C 0.043 3.957 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.196 0.804 42 H 0.352 0.648 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 1.159 19.331 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.360 5.360 7 C 0.325 3.675 8 O -0.415 6.415 9 C -0.210 4.210 10 C -0.026 4.026 11 C -0.029 4.029 12 C -0.208 4.208 13 C -0.239 4.239 14 C -0.097 4.097 15 O -0.037 6.037 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.213 0.787 42 H 0.173 0.827 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.408 1.594 19.526 20.613 hybrid contribution -0.470 -0.825 -1.287 1.599 sum 5.938 0.769 18.240 19.197 Atomic orbital electron populations 1.21754 0.95258 1.01885 1.02092 1.22210 0.96770 0.98041 1.03005 1.21941 0.94409 0.93442 0.93931 0.89249 1.21369 0.92761 0.83955 1.01624 1.45751 1.07312 1.10155 1.72782 1.17124 0.82619 0.89855 0.77882 1.90850 1.55327 1.46459 1.48903 1.22396 0.96839 0.97313 1.04421 1.20599 0.91924 0.96454 0.93653 1.19537 0.95208 0.96338 0.91815 1.22084 0.95105 1.01308 1.02287 1.21598 1.01702 1.02465 0.98148 1.24011 0.86815 0.96487 1.02362 1.84153 1.39846 1.39451 1.40288 1.60220 1.16048 1.53144 0.99706 1.21770 1.00641 0.95700 0.90819 1.19790 0.85447 0.87624 0.84351 1.90513 1.42622 1.27261 1.86429 1.41879 1.46578 1.26222 1.05383 1.19735 1.30516 1.09042 0.83527 0.87898 1.25265 0.96629 0.96579 0.99504 1.69624 1.35074 1.22487 1.27035 0.85813 0.78218 0.79392 0.80993 1.19220 1.20738 1.20784 0.92537 0.92516 0.92445 0.91111 0.91370 0.91443 0.91426 0.75304 0.84224 0.82832 0.83542 0.83778 0.78716 0.82705 0.89470 0.93575 0.77539 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.56 37.16 0.36 -1.11 16 2 C -0.16 -1.63 5.25 -26.73 -0.14 -1.77 16 3 C 0.07 0.82 2.70 -67.71 -0.18 0.63 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.13 1.58 4.59 -4.04 -0.02 1.57 16 6 N -0.71 -9.19 5.38 -63.24 -0.34 -9.53 16 7 C 0.54 7.80 7.39 -15.00 -0.11 7.69 16 8 O -0.54 -9.40 12.84 -18.68 -0.24 -9.64 16 9 C -0.19 -2.21 9.85 -39.25 -0.39 -2.60 16 10 C -0.01 -0.07 9.95 -39.23 -0.39 -0.46 16 11 C 0.02 0.28 4.95 -38.41 -0.19 0.09 16 12 C -0.19 -2.34 10.90 -38.91 -0.42 -2.77 16 13 C -0.22 -2.54 10.87 -39.90 -0.43 -2.98 16 14 C -0.03 -0.31 12.06 29.64 0.36 0.04 16 15 O -0.14 -2.03 8.55 -19.12 -0.16 -2.19 16 16 N -0.66 -9.51 5.42 -107.99 -0.59 -10.09 16 17 C 0.04 0.74 5.38 -4.97 -0.03 0.72 16 18 C 0.44 10.28 7.83 -10.99 -0.09 10.20 16 19 O -0.58 -15.42 15.87 5.55 0.09 -15.34 16 20 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.63 7.10 -51.93 -0.37 0.26 16 32 H 0.07 0.80 6.26 -51.94 -0.33 0.48 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.41 4.99 8.10 -40.82 -0.33 4.66 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.35 5.25 7.22 -39.29 -0.28 4.96 16 43 H 0.09 1.51 6.15 -51.93 -0.32 1.19 16 44 H 0.05 0.73 6.45 -51.93 -0.34 0.40 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -34.44 385.94 -8.06 -42.51 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -6.36 Total: 19.56 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.92 Total: 1.26 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.26 Total: -58.07 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.32 Total: -27.17 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.44 -8.06 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567948194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.101 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds