Wall clock time and date at job start Tue Mar 31 2020 19:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.08998 * 109.46969 * 54.31457 * 3 2 1 5 5 C 1.53000 * 109.47138 * 174.31600 * 3 2 1 6 6 N 1.46505 * 109.46868 * 174.99803 * 5 3 2 7 7 C 1.34770 * 119.99438 * 180.02562 * 6 5 3 8 8 O 1.21778 * 120.00656 * 359.97438 * 7 6 5 9 9 C 1.41557 * 119.99765 * 180.02562 * 7 6 5 10 10 C 1.35624 * 120.00417 * 173.87214 * 9 7 6 11 11 C 1.41607 * 119.99897 * 350.22084 * 10 9 7 12 12 C 1.37941 * 126.10861 * 132.04956 * 11 10 9 13 13 C 1.40320 * 106.53157 * 179.72622 * 12 11 10 14 14 C 1.35157 * 107.20129 * 0.40998 * 13 12 11 15 15 O 1.34014 * 109.03482 * 359.58033 * 14 13 12 16 16 N 1.46897 * 109.46799 * 294.32023 * 3 2 1 17 17 C 1.46901 * 110.99966 * 297.98235 * 16 3 2 18 18 C 1.50701 * 109.47292 * 184.18990 * 17 16 3 19 19 O 1.21291 * 119.99996 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00221 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00384 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99246 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00209 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47154 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47166 * 120.00581 * 25 23 21 28 28 H 1.48506 * 109.47001 * 240.00263 * 25 23 21 29 29 H 1.09007 * 109.47217 * 185.55928 * 1 2 3 30 30 H 1.08994 * 109.47498 * 305.55604 * 1 2 3 31 31 H 1.09001 * 109.47324 * 65.55854 * 1 2 3 32 32 H 1.08989 * 109.47188 * 239.99865 * 2 1 3 33 33 H 1.09004 * 109.46768 * 119.99581 * 2 1 3 34 34 H 1.09000 * 109.46921 * 54.99964 * 5 3 2 35 35 H 1.08991 * 109.47080 * 294.99848 * 5 3 2 36 36 H 0.96995 * 119.99776 * 0.02562 * 6 5 3 37 37 H 1.07999 * 119.99912 * 353.86998 * 9 7 6 38 38 H 1.07996 * 120.00252 * 170.21232 * 10 9 7 39 39 H 1.08003 * 126.73738 * 0.02562 * 12 11 10 40 40 H 1.08000 * 126.40288 * 180.28894 * 13 12 11 41 41 H 1.08000 * 125.47847 * 179.84888 * 14 13 12 42 42 H 1.00901 * 111.00308 * 61.94133 * 16 3 2 43 43 H 1.08994 * 109.47340 * 304.19259 * 17 16 3 44 44 H 1.09001 * 109.46527 * 64.19409 * 17 16 3 45 45 H 0.97006 * 119.99574 * 0.02562 * 20 18 17 46 46 H 0.96994 * 120.00025 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 0.8347 5 6 3.5633 1.4449 0.1429 6 7 4.0628 2.8170 0.0232 7 6 5.3844 3.0634 0.1169 8 8 6.1634 2.1458 0.3016 9 6 5.8671 4.3892 0.0019 10 6 7.1792 4.6545 0.2193 11 6 8.0236 3.6546 0.7600 12 6 9.2648 3.2918 0.2798 13 6 9.7368 2.2735 1.1220 14 6 8.7844 2.0532 2.0553 15 8 7.7579 2.8868 1.8375 16 7 1.6654 2.0942 -1.2621 17 6 2.2862 1.4174 -2.4086 18 6 1.9641 2.1724 -3.6724 19 8 1.2847 3.1759 -3.6229 20 7 2.4310 1.7326 -4.8577 21 6 2.1384 2.4197 -6.0074 22 1 1.5334 3.3133 -5.9632 23 6 2.6202 1.9665 -7.2293 24 7 3.3560 0.8789 -7.2831 25 14 2.2210 2.9024 -8.7959 26 1 1.3823 4.0830 -8.4671 27 1 3.4817 3.3545 -9.4374 28 1 1.4820 2.0139 -9.7286 29 1 -0.3634 -1.0229 0.0996 30 1 -0.3634 0.5975 0.8360 31 1 -0.3634 0.4252 -0.9356 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0027 0.8286 -0.6414 35 1 3.8374 1.0422 1.1179 36 1 3.4423 3.5479 -0.1235 37 1 5.1904 5.1894 -0.2591 38 1 7.5802 5.6283 -0.0201 39 1 9.7755 3.7126 -0.5738 40 1 10.6833 1.7602 1.0387 41 1 8.8432 1.3258 2.8514 42 1 0.6624 2.1336 -1.3650 43 1 3.3668 1.3851 -2.2700 44 1 1.8990 0.4012 -2.4837 45 1 2.9741 0.9297 -4.8974 46 1 3.6926 0.5628 -8.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567948194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:43 Heat of formation + Delta-G solvation = -57.112912 kcal Electronic energy + Delta-G solvation = -28740.665691 eV Core-core repulsion = 24631.735355 eV Total energy + Delta-G solvation = -4108.930336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.28037 -40.96486 -40.20713 -38.68696 -35.96801 -35.24114 -34.86820 -33.70886 -33.32341 -32.82270 -30.46354 -29.21150 -28.08848 -26.15619 -25.27966 -23.62651 -22.53557 -21.92406 -21.71355 -20.84474 -20.21762 -19.83955 -18.78452 -18.32447 -17.55444 -17.17063 -16.78142 -16.69696 -16.48647 -16.17458 -15.89352 -15.64472 -15.41677 -15.19750 -14.97358 -14.67651 -14.36389 -14.08123 -14.01835 -13.71702 -13.56117 -13.54517 -13.39925 -13.24656 -13.15908 -12.91250 -12.71639 -12.40499 -12.28112 -12.11551 -11.84195 -11.70916 -11.50655 -11.07220 -10.88380 -10.67771 -10.34901 -10.01604 -9.93543 -9.34649 -8.89938 -8.46720 -5.95721 -0.29338 1.14002 1.36259 1.41291 1.55741 1.79201 2.05098 2.24365 2.28651 2.44602 2.55701 2.95206 3.20438 3.53050 3.72567 3.88809 3.99184 4.09197 4.15268 4.19123 4.25805 4.27657 4.33831 4.45456 4.51013 4.52325 4.56136 4.73304 4.79362 4.87223 4.90337 4.93725 5.09486 5.10026 5.15760 5.24559 5.36606 5.38709 5.40690 5.53694 5.69630 5.87319 6.07871 6.29090 6.39747 6.58926 6.67812 7.12337 7.33968 7.55891 8.10389 8.71056 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009127 B = 0.003062 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.989498 B = 9142.943375 C =11255.340709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.112 0.888 5 C 0.129 3.871 6 N -0.704 5.704 7 C 0.526 3.474 8 O -0.573 6.573 9 C -0.209 4.209 10 C 0.002 3.998 11 C -0.005 4.005 12 C -0.203 4.203 13 C -0.232 4.232 14 C -0.037 4.037 15 O -0.165 6.165 16 N -0.663 5.663 17 C 0.064 3.936 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.192 0.808 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.226 0.774 42 H 0.352 0.648 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.393 0.607 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 1.333 19.989 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.130 0.870 5 C 0.004 3.996 6 N -0.355 5.355 7 C 0.317 3.683 8 O -0.456 6.456 9 C -0.229 4.229 10 C -0.017 4.017 11 C -0.054 4.054 12 C -0.222 4.222 13 C -0.250 4.250 14 C -0.106 4.106 15 O -0.060 6.060 16 N -0.296 5.296 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.214 5.214 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.183 0.817 38 H 0.209 0.791 39 H 0.179 0.821 40 H 0.184 0.816 41 H 0.242 0.758 42 H 0.173 0.827 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.226 0.774 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.463 1.759 20.203 21.285 hybrid contribution -0.450 -0.914 -1.394 1.727 sum 6.012 0.845 18.809 19.765 Atomic orbital electron populations 1.21740 0.94653 1.02572 1.01799 1.22170 0.97174 0.97005 1.03257 1.21972 0.93522 0.94386 0.92668 0.87007 1.21378 0.93396 0.83540 1.01270 1.45773 1.07112 1.10476 1.72155 1.17637 0.82723 0.90693 0.77236 1.90823 1.56159 1.47734 1.50860 1.22546 0.97736 0.96666 1.05944 1.21127 0.91441 0.97343 0.91808 1.20062 0.96033 0.97107 0.92241 1.22457 0.95174 1.01680 1.02858 1.21971 1.02661 1.02481 0.97936 1.24730 0.86264 0.96418 1.03162 1.84135 1.40887 1.40095 1.40855 1.60182 1.15861 1.53620 0.99900 1.21502 1.00898 0.95623 0.88873 1.20793 0.83682 0.87160 0.85431 1.90482 1.43742 1.28835 1.87187 1.41974 1.47269 1.26383 1.05733 1.19708 1.31752 1.09324 0.85198 0.90070 1.26068 0.96040 0.97307 1.02064 1.69693 1.35336 1.23305 1.28091 0.84864 0.78252 0.78078 0.77114 1.19493 1.19754 1.19660 0.91749 0.91137 0.94053 0.92441 0.89558 0.93484 0.90658 0.74795 0.81691 0.79129 0.82107 0.81637 0.75767 0.82750 0.89354 0.91890 0.77388 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.56 71.98 0.69 -1.90 16 2 C -0.16 -2.86 5.25 30.59 0.16 -2.70 16 3 C 0.08 1.73 2.70 44.92 0.12 1.85 16 4 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 5 C 0.13 3.09 4.59 86.38 0.40 3.48 16 6 N -0.70 -17.84 5.38 -472.18 -2.54 -20.38 16 7 C 0.53 15.25 7.39 85.06 0.63 15.88 16 8 O -0.57 -20.35 12.84 18.16 0.23 -20.12 16 9 C -0.21 -4.72 9.85 22.48 0.22 -4.49 16 10 C 0.00 0.05 9.95 22.50 0.22 0.27 16 11 C 0.00 -0.12 4.95 23.03 0.11 -0.01 16 12 C -0.20 -4.92 10.90 22.71 0.25 -4.67 16 13 C -0.23 -5.17 10.87 22.07 0.24 -4.93 16 14 C -0.04 -0.84 12.06 67.11 0.81 -0.03 16 15 O -0.17 -4.66 8.55 16.59 0.14 -4.52 16 16 N -0.66 -18.48 5.42 -495.58 -2.69 -21.17 16 17 C 0.06 2.17 5.38 85.56 0.46 2.63 16 18 C 0.44 20.81 7.83 87.66 0.69 21.50 16 19 O -0.62 -33.07 15.87 -3.06 -0.05 -33.12 16 20 N -0.58 -29.94 5.29 -306.99 -1.62 -31.56 16 21 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.02 -0.83 5.50 84.92 0.47 -0.37 16 24 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.19 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.84 7.10 -2.39 -0.02 0.83 16 32 H 0.06 1.22 6.26 -2.39 -0.01 1.20 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 1.33 6.57 -2.39 -0.02 1.32 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.42 9.69 8.10 -92.71 -0.75 8.94 16 37 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.23 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.35 10.14 7.22 -89.69 -0.65 9.49 16 43 H 0.09 3.05 6.15 -2.39 -0.01 3.04 16 44 H 0.06 1.96 6.45 -2.39 -0.02 1.95 16 45 H 0.39 19.84 7.90 -92.70 -0.73 19.11 16 46 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -75.72 385.94 0.97 -74.75 By element: Atomic # 1 Polarization: 53.98 SS G_CDS: -1.09 Total: 52.88 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.28 Total: 8.50 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -6.57 Total: -123.56 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: 0.33 Total: -57.75 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -75.72 0.97 -74.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567948194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.632 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds