Wall clock time and date at job start Tue Mar 31 2020 19:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 H 1.08999 * 109.47109 * 304.99682 * 3 2 1 5 5 C 1.53000 * 109.47144 * 184.99927 * 3 2 1 6 6 N 1.46503 * 109.47279 * 185.00013 * 5 3 2 7 7 C 1.34775 * 120.00215 * 179.97438 * 6 5 3 8 8 O 1.21627 * 119.99787 * 0.02562 * 7 6 5 9 9 C 1.47285 * 120.00481 * 179.97438 * 7 6 5 10 10 C 1.36592 * 127.53496 * 359.95456 * 9 7 6 11 11 O 1.34101 * 108.89340 * 179.97438 * 10 9 7 12 12 C 1.33390 * 111.29487 * 359.50118 * 11 10 9 13 13 C 1.36161 * 108.05100 * 0.91187 * 12 11 10 14 14 C 1.47711 * 122.21637 * 178.95040 * 13 12 11 15 15 O 1.21620 * 122.33444 * 223.70280 * 14 13 12 16 16 N 1.35753 * 115.33902 * 43.67815 * 14 13 12 17 17 C 1.45337 * 119.17933 * 14.06962 * 16 14 13 18 18 C 1.52900 * 113.82622 * 273.93975 * 17 16 14 19 19 C 1.50517 * 128.60260 * 181.00876 * 12 11 10 20 20 N 1.46504 * 109.47441 * 65.00100 * 3 2 1 21 21 C 1.36942 * 119.99287 * 274.99781 * 20 3 2 22 22 H 1.07995 * 120.00632 * 0.02562 * 21 20 3 23 23 C 1.38820 * 119.99243 * 179.97438 * 21 20 3 24 24 N 1.31613 * 120.00031 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99428 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46900 * 90.00448 * 25 23 21 27 27 H 1.48497 * 109.46956 * 209.99937 * 25 23 21 28 28 H 1.48502 * 109.47434 * 330.00340 * 25 23 21 29 29 H 1.09002 * 109.46985 * 300.00607 * 1 2 3 30 30 H 1.09003 * 109.47046 * 59.99975 * 1 2 3 31 31 H 1.09001 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47440 * 239.99839 * 2 1 3 33 33 H 1.09003 * 109.46613 * 119.99384 * 2 1 3 34 34 H 1.08997 * 109.47408 * 64.99645 * 5 3 2 35 35 H 1.09000 * 109.47197 * 304.99815 * 5 3 2 36 36 H 0.97004 * 119.99891 * 359.97438 * 6 5 3 37 37 H 1.08000 * 125.55031 * 359.95097 * 10 9 7 38 38 H 0.97000 * 120.41138 * 194.05012 * 16 14 13 39 39 H 1.08998 * 108.61206 * 152.81625 * 17 16 14 40 40 H 1.09002 * 108.49956 * 34.98480 * 17 16 14 41 41 H 1.09003 * 109.46873 * 284.34117 * 18 17 16 42 42 H 1.09003 * 109.46110 * 164.35031 * 18 17 16 43 43 H 1.09002 * 109.45503 * 349.15946 * 19 12 11 44 44 H 1.09000 * 109.45232 * 229.20159 * 19 12 11 45 45 H 0.96998 * 120.00168 * 94.99752 * 20 3 2 46 46 H 0.97000 * 119.99495 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0629 -0.0858 8 8 6.1657 2.1457 -0.2577 9 6 5.8867 4.4428 0.0341 10 6 5.1549 5.5801 0.2259 11 8 5.9887 6.6289 0.2807 12 6 7.2590 6.2455 0.1442 13 6 7.2759 4.8949 -0.0279 14 6 8.5306 4.1429 -0.2332 15 8 8.6347 3.2677 -1.0713 16 7 9.5596 4.4970 0.5784 17 6 9.2902 5.3179 1.7470 18 6 9.2868 6.8197 1.4595 19 6 8.5031 7.0923 0.1671 20 7 1.6525 2.0975 1.2518 21 6 0.4156 2.6735 1.3687 22 1 -0.2743 2.6446 0.5383 23 6 0.0482 3.2938 2.5550 24 7 0.8888 3.3286 3.5672 25 14 -1.6393 4.0790 2.7147 26 1 -2.6053 3.0756 3.2298 27 1 -1.5652 5.2240 3.6573 28 1 -2.0888 4.5613 1.3841 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8499 1.0376 -1.0959 35 1 3.9954 0.8311 0.6659 36 1 3.4410 3.5484 0.1308 37 1 4.0798 5.6269 0.3180 38 1 10.4634 4.2055 0.3809 39 1 10.0494 5.1098 2.5009 40 1 8.3163 5.0385 2.1490 41 1 10.3126 7.1696 1.3430 42 1 8.8149 7.3471 2.2885 43 1 8.2261 8.1458 0.1258 44 1 9.1254 6.8466 -0.6935 45 1 2.2719 2.1232 1.9978 46 1 0.6321 3.7623 4.3960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567968536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:16 Heat of formation + Delta-G solvation = -50.032972 kcal Electronic energy + Delta-G solvation = -29407.291748 eV Core-core repulsion = 25298.668422 eV Total energy + Delta-G solvation = -4108.623327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.96342 -39.50663 -39.07161 -36.73943 -36.59456 -33.71154 -33.00777 -32.89264 -32.33662 -30.21994 -29.69377 -27.90410 -26.39699 -24.60075 -23.86327 -23.18884 -22.22526 -21.45780 -20.13330 -19.77226 -19.32192 -17.58953 -17.43092 -17.10300 -16.63587 -16.45851 -15.59389 -15.43575 -15.34921 -15.08377 -14.75149 -14.38131 -14.14550 -13.97356 -13.74035 -13.39046 -13.26910 -13.19853 -12.95259 -12.77562 -12.58557 -12.13960 -12.10589 -11.68730 -11.44206 -11.34357 -10.98432 -10.92868 -10.74176 -10.43658 -10.21164 -10.10477 -10.02964 -9.82159 -9.64945 -9.55223 -9.24354 -8.98812 -8.75311 -8.55220 -7.06743 -5.85011 -3.14216 1.24594 1.41974 2.46782 2.78803 3.23118 3.36585 3.42911 3.44340 3.50510 3.66506 4.23834 4.33385 4.46287 4.50603 4.51869 4.69266 4.88148 5.01810 5.12278 5.28694 5.31342 5.38185 5.42269 5.49510 5.51953 5.56949 5.60177 5.80268 5.92299 5.94536 5.96690 5.99252 6.20596 6.43252 6.55327 6.58256 6.61264 6.73478 6.81519 6.91451 6.99089 7.03192 7.23492 7.63569 7.95731 8.19263 8.32347 8.62100 9.44396 9.99629 10.36036 11.36713 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.003178 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.107851 B = 8807.456550 C =10214.322428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.117 3.883 6 N -0.708 5.708 7 C 0.575 3.425 8 O -0.526 6.526 9 C -0.177 4.177 10 C 0.022 3.978 11 O -0.157 6.157 12 C 0.027 3.973 13 C -0.192 4.192 14 C 0.595 3.405 15 O -0.494 6.494 16 N -0.733 5.733 17 C 0.105 3.895 18 C -0.135 4.135 19 C -0.040 4.040 20 N -0.722 5.722 21 C -0.237 4.237 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.406 0.594 37 H 0.224 0.776 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.573 8.994 -4.787 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.007 4.007 6 N -0.360 5.360 7 C 0.361 3.639 8 O -0.403 6.403 9 C -0.182 4.182 10 C -0.047 4.047 11 O -0.051 6.051 12 C -0.025 4.025 13 C -0.197 4.197 14 C 0.381 3.619 15 O -0.366 6.366 16 N -0.388 5.388 17 C -0.020 4.020 18 C -0.174 4.174 19 C -0.077 4.077 20 N -0.364 5.364 21 C -0.368 4.368 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.240 0.760 38 H 0.239 0.761 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.726 8.257 -5.309 18.538 hybrid contribution -0.954 0.509 0.554 1.215 sum 14.771 8.766 -4.755 17.823 Atomic orbital electron populations 1.21770 0.95731 0.99652 1.03201 1.22062 0.96934 0.98374 1.00111 1.20572 0.89892 0.92855 0.91390 0.92779 1.21680 0.95500 0.82240 1.01302 1.45777 1.06358 1.10916 1.72958 1.17137 0.82599 0.86613 0.77574 1.90847 1.55875 1.44955 1.48612 1.20943 0.91841 0.94786 1.10640 1.24812 0.96120 0.82859 1.00930 1.83562 1.15594 1.36578 1.69340 1.22590 0.84483 0.93300 1.02134 1.20899 0.93899 0.93439 1.11496 1.17642 0.82682 0.81087 0.80483 1.90877 1.82695 1.28353 1.34724 1.45684 1.10424 1.54798 1.27918 1.21173 1.03483 0.90026 0.87364 1.22255 1.00868 0.96997 0.97231 1.20264 0.88365 0.98996 1.00095 1.42478 1.16755 1.65877 1.11335 1.19220 0.91969 1.27626 0.98011 0.90885 1.24723 0.97971 1.01644 0.96358 1.69663 1.35114 1.48985 1.03963 0.86279 0.84326 0.78790 0.77317 1.21772 1.21879 1.20768 0.89706 0.94109 0.94867 0.93775 0.92499 0.91687 0.91734 0.75738 0.76009 0.76091 0.89776 0.90593 0.89911 0.89589 0.89017 0.88615 0.78079 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.12 2.06 5.23 -4.04 -0.02 2.03 16 6 N -0.71 -12.20 5.38 -61.43 -0.33 -12.53 16 7 C 0.58 10.75 7.81 -12.58 -0.10 10.65 16 8 O -0.53 -11.77 15.77 -3.77 -0.06 -11.83 16 9 C -0.18 -2.82 6.32 -103.61 -0.65 -3.47 16 10 C 0.02 0.28 11.61 30.14 0.35 0.63 16 11 O -0.16 -1.86 10.48 8.61 0.09 -1.77 16 12 C 0.03 0.31 6.35 -35.14 -0.22 0.08 16 13 C -0.19 -2.83 4.99 -103.57 -0.52 -3.35 16 14 C 0.59 9.17 7.29 -11.95 -0.09 9.08 16 15 O -0.49 -9.86 17.12 -3.77 -0.06 -9.93 16 16 N -0.73 -7.50 5.26 -61.87 -0.33 -7.82 16 17 C 0.11 0.79 6.00 -4.72 -0.03 0.77 16 18 C -0.13 -0.71 6.32 -26.48 -0.17 -0.88 16 19 C -0.04 -0.28 5.65 -27.67 -0.16 -0.44 16 20 N -0.72 -16.09 4.51 -53.42 -0.24 -16.33 16 21 C -0.24 -5.85 7.75 -15.05 -0.12 -5.97 16 22 H 0.07 1.77 7.32 -52.49 -0.38 1.39 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 25 Si 0.90 20.97 29.55 -169.99 -5.02 15.95 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.41 6.66 7.14 -40.82 -0.29 6.37 16 37 H 0.22 2.30 7.49 -52.49 -0.39 1.91 16 38 H 0.40 3.29 8.95 -40.82 -0.37 2.93 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.75 6.93 -51.93 -0.36 0.39 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.66 8.04 -51.93 -0.42 0.24 16 45 H 0.39 9.44 7.80 -40.82 -0.32 9.13 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -34.42 378.14 -7.96 -42.38 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -6.62 Total: 14.67 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.80 Total: 6.85 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.17 Total: -62.01 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.03 Total: -23.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.42 -7.96 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567968536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.653 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds