Wall clock time and date at job start Tue Mar 31 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 C 1.53001 * 109.47056 * 240.00505 * 2 1 3 5 5 C 1.52997 * 109.47128 * 120.00072 * 2 1 3 6 6 H 1.09001 * 115.55962 * 274.30951 * 5 2 1 7 7 C 1.53006 * 117.49893 * 128.62369 * 5 2 1 8 8 C 1.53000 * 117.49772 * 60.00242 * 5 2 1 9 9 H 1.09000 * 117.51962 * 0.02562 * 8 5 2 10 10 C 1.50704 * 117.49625 * 214.97861 * 8 5 2 11 11 O 1.21272 * 119.99982 * 359.97438 * 10 8 5 12 12 N 1.34774 * 119.99801 * 179.97438 * 10 8 5 13 13 C 1.38483 * 119.99803 * 185.02136 * 12 10 8 14 14 C 1.39237 * 126.43275 * 91.88210 * 13 12 10 15 15 C 1.46748 * 126.51207 * 359.97438 * 14 13 12 16 16 O 1.21596 * 119.99947 * 0.03787 * 15 14 13 17 17 O 1.34834 * 120.00051 * 180.02562 * 15 14 13 18 18 C 1.41466 * 106.97426 * 179.97438 * 14 13 12 19 19 N 1.30305 * 108.17304 * 359.97438 * 18 14 13 20 20 N 1.34762 * 126.43472 * 271.87741 * 13 12 10 21 21 C 1.46497 * 125.74515 * 359.97438 * 20 13 12 22 22 C 1.50700 * 109.47436 * 85.32441 * 21 20 13 23 23 H 1.08004 * 119.99520 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00592 * 180.02562 * 22 21 20 25 25 N 1.31523 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00270 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46949 * 59.99806 * 26 24 22 28 28 H 1.48502 * 109.47039 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47000 * 299.99712 * 26 24 22 30 30 H 1.08998 * 109.47185 * 300.00166 * 1 2 3 31 31 H 1.09002 * 109.47399 * 59.99932 * 1 2 3 32 32 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47697 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46974 * 300.00329 * 3 2 1 35 35 H 1.09007 * 109.47072 * 60.00068 * 3 2 1 36 36 H 1.09008 * 109.46803 * 299.99597 * 4 2 1 37 37 H 1.08997 * 109.47687 * 59.99907 * 4 2 1 38 38 H 1.09004 * 109.46968 * 180.02562 * 4 2 1 39 39 H 1.08994 * 117.49989 * 145.01897 * 7 5 2 40 40 H 1.08998 * 117.51408 * 359.97438 * 7 5 2 41 41 H 0.97001 * 120.00404 * 5.01754 * 12 10 8 42 42 H 0.96695 * 116.99830 * 180.02562 * 17 15 14 43 43 H 1.08003 * 125.91698 * 179.73540 * 18 14 13 44 44 H 1.09006 * 109.47686 * 205.32521 * 21 20 13 45 45 H 1.09001 * 109.47414 * 325.32399 * 21 20 13 46 46 H 0.96991 * 120.00144 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 2.1271 -0.1061 2.1448 7 6 3.0742 -1.8314 1.0513 8 6 1.6357 -2.1852 1.4342 9 1 1.0068 -2.6350 0.6659 10 6 1.3884 -2.6664 2.8408 11 8 1.5125 -1.9017 3.7738 12 7 1.0294 -3.9465 3.0617 13 6 0.7011 -4.3626 4.3411 14 6 -0.5719 -4.3770 4.9049 15 6 -1.8187 -3.9542 4.2567 16 8 -1.7998 -3.5414 3.1131 17 8 -2.9854 -4.0236 4.9291 18 6 -0.4350 -4.8768 6.2212 19 7 0.8243 -5.1410 6.4267 20 7 1.5539 -4.8296 5.2743 21 6 3.0010 -4.9868 5.1091 22 6 3.6872 -3.6824 5.4231 23 1 3.1035 -2.8221 5.7159 24 6 5.0598 -3.5868 5.3355 25 7 5.7704 -4.6342 4.9784 26 14 5.9101 -1.9696 5.7239 27 1 5.6119 -1.5775 7.1249 28 1 7.3771 -2.1290 5.5566 29 1 5.4176 -0.9168 4.7997 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7215 -1.2491 39 1 3.8416 -1.9465 1.8167 40 1 3.3911 -2.0483 0.0312 41 1 1.0008 -4.5764 2.3246 42 1 -3.7801 -3.7342 4.4604 43 1 -1.2351 -5.0120 6.9339 44 1 3.3623 -5.7599 5.7874 45 1 3.2203 -5.2744 4.0808 46 1 6.7361 -4.5671 4.9171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573469500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:02 Heat of formation + Delta-G solvation = -61.138124 kcal Electronic energy + Delta-G solvation = -30176.108456 eV Core-core repulsion = 26067.003574 eV Total energy + Delta-G solvation = -4109.104882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.71200 -41.15859 -40.53232 -39.22588 -36.89888 -36.05780 -35.71653 -34.80499 -33.60097 -30.77879 -29.38918 -28.24564 -28.11426 -26.41599 -25.39628 -24.23603 -23.83227 -22.20587 -21.78978 -21.06029 -19.35500 -19.11615 -18.94083 -18.75610 -18.32192 -17.34724 -16.78797 -16.62931 -16.50817 -16.20142 -15.61274 -15.56104 -15.29292 -14.98686 -14.78343 -14.62112 -14.32864 -14.19666 -13.86543 -13.76072 -13.48710 -13.16353 -13.11648 -12.85406 -12.59365 -12.47980 -12.44156 -12.40039 -12.34440 -12.09351 -11.96705 -11.93393 -11.49913 -11.43200 -11.29640 -11.07640 -10.93172 -10.80984 -10.68575 -10.50474 -9.80500 -8.42029 -6.53948 0.16874 1.04713 1.21204 1.28802 1.29476 1.40186 1.43757 2.02331 2.17592 2.27014 2.40178 2.80181 2.90578 3.47242 3.67601 3.70835 3.77472 3.95134 4.06466 4.09172 4.23971 4.25123 4.30147 4.58949 4.67025 4.73704 4.80581 4.83058 4.83936 4.88034 4.95830 4.97211 5.02414 5.09114 5.11997 5.17736 5.23790 5.38617 5.46281 5.50870 5.51644 5.55896 5.67060 5.69721 5.89639 6.23107 6.51836 6.61491 7.09441 7.14857 7.16476 8.65993 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007388 B = 0.005990 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3788.792927 B = 4673.623445 C = 7710.894931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.105 4.105 6 H 0.082 0.918 7 C -0.142 4.142 8 C -0.177 4.177 9 H 0.157 0.843 10 C 0.557 3.443 11 O -0.558 6.558 12 N -0.647 5.647 13 C 0.373 3.627 14 C -0.310 4.310 15 C 0.573 3.427 16 O -0.550 6.550 17 O -0.500 6.500 18 C 0.106 3.894 19 N -0.316 5.316 20 N -0.328 5.328 21 C 0.269 3.731 22 C -0.540 4.540 23 H 0.042 0.958 24 C 0.034 3.966 25 N -0.911 5.911 26 Si 0.954 3.046 27 H -0.277 1.277 28 H -0.264 1.264 29 H -0.277 1.277 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.145 0.855 41 H 0.429 0.571 42 H 0.431 0.569 43 H 0.235 0.765 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 4.098 -13.083 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.124 4.124 6 H 0.100 0.900 7 C -0.179 4.179 8 C -0.198 4.198 9 H 0.174 0.826 10 C 0.346 3.654 11 O -0.434 6.434 12 N -0.302 5.302 13 C 0.144 3.856 14 C -0.326 4.326 15 C 0.419 3.581 16 O -0.442 6.442 17 O -0.313 6.313 18 C -0.081 4.081 19 N -0.137 5.137 20 N -0.106 5.106 21 C 0.151 3.849 22 C -0.578 4.578 23 H 0.060 0.940 24 C -0.168 4.168 25 N -0.549 5.549 26 Si 0.779 3.221 27 H -0.202 1.202 28 H -0.188 1.188 29 H -0.203 1.203 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.270 0.730 42 H 0.293 0.707 43 H 0.251 0.749 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.608 4.100 -11.721 16.332 hybrid contribution -0.309 0.683 -0.254 0.791 sum -10.917 4.783 -11.975 16.895 Atomic orbital electron populations 1.21836 0.93940 1.02004 1.01702 1.20117 0.95676 0.95415 0.92212 1.21840 1.01171 0.94454 1.02073 1.22026 1.01523 1.00589 0.96032 1.22486 1.01201 0.88639 1.00063 0.90017 1.23304 0.89380 1.01161 1.04093 1.22174 1.02726 1.02073 0.92853 0.82595 1.20445 0.73322 0.80233 0.91386 1.90715 1.50653 1.55559 1.46455 1.42311 1.70584 1.11963 1.05336 1.18066 0.88448 0.94180 0.84873 1.19157 0.90671 1.24366 0.98409 1.19182 0.83080 0.73160 0.82655 1.90841 1.87666 1.46059 1.19650 1.84508 1.17719 1.80126 1.48977 1.24567 0.94436 0.94295 0.94758 1.77180 1.05662 1.25272 1.05594 1.49741 1.09332 1.43313 1.08237 1.19409 0.69297 0.98094 0.98146 1.21208 0.92295 0.95875 1.48470 0.93959 1.25468 0.97163 0.99961 0.94211 1.69954 1.07516 1.30487 1.46979 0.85665 0.77896 0.79741 0.78787 1.20233 1.18843 1.20277 0.94281 0.90657 0.92697 0.92538 0.90569 0.93752 0.91837 0.90906 0.91731 0.91221 0.83686 0.72965 0.70731 0.74907 0.94011 0.93405 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.31 71.98 0.60 -2.14 16 2 C -0.03 -0.69 0.88 -52.18 -0.05 -0.74 16 3 C -0.14 -2.60 8.46 71.98 0.61 -1.99 16 4 C -0.14 -2.20 7.07 71.98 0.51 -1.69 16 5 C -0.10 -2.96 4.66 -10.79 -0.05 -3.01 16 6 H 0.08 2.90 7.64 -2.39 -0.02 2.88 16 7 C -0.14 -3.96 9.27 30.60 0.28 -3.67 16 8 C -0.18 -5.20 5.04 -11.54 -0.06 -5.26 16 9 H 0.16 3.50 7.07 -2.39 -0.02 3.49 16 10 C 0.56 22.25 7.57 87.66 0.66 22.91 16 11 O -0.56 -28.09 16.04 -3.01 -0.05 -28.14 16 12 N -0.65 -24.12 4.52 -307.36 -1.39 -25.51 16 13 C 0.37 15.60 6.48 132.55 0.86 16.46 16 14 C -0.31 -11.49 6.15 -20.02 -0.12 -11.61 16 15 C 0.57 18.23 8.31 70.05 0.58 18.81 16 16 O -0.55 -19.35 17.08 19.52 0.33 -19.01 16 17 O -0.50 -10.99 13.28 -57.47 -0.76 -11.75 16 18 C 0.11 3.67 11.86 85.71 1.02 4.69 16 19 N -0.32 -13.70 12.47 -56.23 -0.70 -14.40 16 20 N -0.33 -15.32 3.58 -347.30 -1.24 -16.56 16 21 C 0.27 14.02 6.08 85.63 0.52 14.54 16 22 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 23 H 0.04 2.66 7.62 -2.91 -0.02 2.64 16 24 C 0.03 1.88 5.46 84.65 0.46 2.34 16 25 N -0.91 -51.20 13.29 21.45 0.28 -50.91 16 26 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 28 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 29 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.12 7.29 -2.39 -0.02 1.10 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.06 0.91 7.07 -2.38 -0.02 0.89 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.96 6.98 -2.38 -0.02 0.94 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.15 2.93 5.85 -2.39 -0.01 2.92 16 41 H 0.43 12.69 8.82 -92.71 -0.82 11.87 16 42 H 0.43 4.95 9.11 -74.06 -0.67 4.28 16 43 H 0.23 5.67 8.06 -2.91 -0.02 5.65 16 44 H 0.04 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -76.78 393.19 4.10 -72.67 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.46 Total: 27.29 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.07 Total: 18.81 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -3.05 Total: -107.38 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -0.48 Total: -58.90 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -76.78 4.10 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573469500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.535 kcal (2) G-P(sol) polarization free energy of solvation -76.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds