Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47373 * 2 1 4 4 C 1.53005 * 109.46569 * 119.99866 * 2 1 3 5 5 C 1.53007 * 109.47021 * 180.32770 * 4 2 1 6 6 C 1.52998 * 109.47018 * 300.32336 * 4 2 1 7 7 C 1.50708 * 109.46903 * 174.29355 * 6 4 2 8 8 O 1.20823 * 120.00033 * 3.44426 * 7 6 4 9 9 O 1.34232 * 119.99886 * 183.44776 * 7 6 4 10 10 N 1.46498 * 109.47221 * 60.32847 * 4 2 1 11 11 C 1.34773 * 120.00262 * 59.99660 * 10 4 2 12 12 O 1.21584 * 120.00015 * 0.02562 * 11 10 4 13 13 N 1.34771 * 120.00103 * 180.02562 * 11 10 4 14 14 C 1.39469 * 120.00075 * 174.94481 * 13 11 10 15 15 C 1.38648 * 119.64706 * 185.34699 * 14 13 11 16 16 C 1.40816 * 118.67175 * 179.97438 * 15 14 13 17 17 C 1.41540 * 120.99604 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99727 * 146.07223 * 17 16 15 19 19 C 1.40029 * 120.00377 * 326.07382 * 17 16 15 20 20 N 1.30740 * 120.00508 * 170.86057 * 19 17 16 21 21 Si 1.86806 * 119.99629 * 350.85864 * 19 17 16 22 22 H 1.48502 * 109.47051 * 87.90005 * 21 19 17 23 23 H 1.48506 * 109.46842 * 207.90130 * 21 19 17 24 24 H 1.48498 * 109.47136 * 327.90046 * 21 19 17 25 25 C 1.41162 * 118.00635 * 0.02562 * 16 15 14 26 26 C 1.36595 * 119.12738 * 0.02562 * 25 16 15 27 27 N 1.32065 * 121.25856 * 359.73800 * 26 25 16 28 28 H 1.08995 * 109.46960 * 300.00402 * 1 2 3 29 29 H 1.09008 * 109.46543 * 59.99815 * 1 2 3 30 30 H 1.08995 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47180 * 239.99563 * 2 1 3 32 32 H 1.09004 * 109.47342 * 65.38076 * 3 2 1 33 33 H 1.09002 * 109.47250 * 185.37901 * 3 2 1 34 34 H 1.09001 * 109.46870 * 305.37960 * 3 2 1 35 35 H 1.08998 * 109.47002 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47082 * 59.99424 * 5 4 2 37 37 H 1.09004 * 109.46658 * 299.99875 * 5 4 2 38 38 H 1.08997 * 109.47756 * 294.29213 * 6 4 2 39 39 H 1.09005 * 109.46975 * 54.29874 * 6 4 2 40 40 H 0.96698 * 116.99537 * 180.02562 * 9 7 6 41 41 H 0.96999 * 119.99936 * 239.99830 * 10 4 2 42 42 H 0.97000 * 120.00325 * 354.94658 * 13 11 10 43 43 H 1.07998 * 120.66358 * 0.02562 * 15 14 13 44 44 H 0.96999 * 120.00058 * 180.02562 * 20 19 17 45 45 H 1.08005 * 120.43802 * 180.02562 * 25 16 15 46 46 H 1.08003 * 119.36874 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7142 1.2536 6 6 1.5232 -0.0047 2.4985 7 6 1.9071 -0.7925 3.7245 8 8 2.5831 -1.7881 3.6157 9 8 1.4980 -0.3883 4.9374 10 7 1.5580 -2.1047 1.2454 11 6 1.8902 -2.9312 0.2340 12 8 2.5902 -2.5287 -0.6751 13 7 1.4464 -4.2037 0.2301 14 6 1.7010 -5.0277 -0.8659 15 6 1.1476 -6.2982 -0.9121 16 6 1.4177 -7.1126 -2.0286 17 6 0.8787 -8.4177 -2.1263 18 1 0.6033 -8.8174 -3.0911 19 6 0.7025 -9.1907 -0.9720 20 7 0.0442 -10.3185 -1.0347 21 14 1.4081 -8.6104 0.6574 22 1 0.4222 -7.7343 1.3398 23 1 1.7034 -9.7858 1.5156 24 1 2.6597 -7.8497 0.4120 25 6 2.2430 -6.5888 -3.0470 26 6 2.7440 -5.3252 -2.9127 27 7 2.4662 -4.5869 -1.8535 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.7576 1.9278 0.9343 33 1 3.1258 1.4439 -0.0963 34 1 1.6002 1.9833 -0.8379 35 1 3.9332 -1.2284 2.1434 36 1 3.9285 0.3151 1.2564 37 1 3.9380 -1.2247 0.3636 38 1 1.9628 0.9912 2.5542 39 1 0.4377 0.0797 2.4460 40 1 1.7696 -0.9258 5.6939 41 1 0.9998 -2.4259 1.9708 42 1 0.9499 -4.5466 0.9896 43 1 0.5212 -6.6556 -0.1082 44 1 -0.0782 -10.8537 -0.2350 45 1 2.4753 -7.1794 -3.9209 46 1 3.3762 -4.9207 -3.6894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573491156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = -77.444650 kcal Electronic energy + Delta-G solvation = -30038.765452 eV Core-core repulsion = 25928.953466 eV Total energy + Delta-G solvation = -4109.811986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.20590 -39.93901 -38.75420 -37.29530 -36.30787 -34.25372 -33.75442 -33.08169 -31.28165 -31.00666 -28.95527 -28.60770 -26.83717 -25.94300 -23.75582 -22.31949 -22.11073 -21.90835 -20.12908 -18.85259 -18.41885 -18.15663 -17.61135 -17.20602 -16.29640 -16.16991 -15.48739 -15.12122 -14.97505 -14.70042 -14.49398 -14.23638 -14.09553 -13.72766 -13.32160 -13.23245 -13.17646 -12.97403 -12.90240 -12.60900 -12.38774 -12.24720 -11.93352 -11.72990 -11.57641 -11.42521 -11.11880 -10.99452 -10.95706 -10.83626 -10.65984 -10.59000 -10.50684 -10.00799 -9.76022 -9.47630 -9.27317 -8.75024 -8.16502 -7.83175 -7.20961 -6.98075 -4.70090 1.89214 2.43221 2.66271 2.68267 2.90195 3.03993 3.15476 3.27710 3.77815 3.92241 4.18968 4.35721 4.63837 4.66983 4.70586 4.91965 5.06654 5.08459 5.11012 5.41023 5.44507 5.49791 5.56219 5.72386 5.73933 5.75891 5.84861 5.93624 6.08755 6.20327 6.21319 6.29406 6.37147 6.43230 6.45693 6.55530 6.59074 6.78126 6.98718 7.08435 7.25169 7.33517 7.58562 7.69453 7.98038 8.25831 8.28473 8.47628 8.70076 9.08948 9.50920 10.03922 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003465 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.527055 B = 8079.671072 C = 9231.395897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.221 3.779 5 C -0.176 4.176 6 C -0.124 4.124 7 C 0.470 3.530 8 O -0.494 6.494 9 O -0.521 6.521 10 N -0.737 5.737 11 C 0.700 3.300 12 O -0.524 6.524 13 N -0.674 5.674 14 C 0.388 3.612 15 C -0.323 4.323 16 C 0.132 3.868 17 C -0.443 4.443 18 H 0.095 0.905 19 C 0.085 3.915 20 N -0.811 5.811 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.247 1.247 25 C -0.270 4.270 26 C 0.129 3.871 27 N -0.547 5.547 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.410 0.590 41 H 0.387 0.613 42 H 0.402 0.598 43 H 0.110 0.890 44 H 0.286 0.714 45 H 0.110 0.890 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 20.352 11.238 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.134 3.866 5 C -0.234 4.234 6 C -0.162 4.162 7 C 0.312 3.688 8 O -0.381 6.381 9 O -0.334 6.334 10 N -0.394 5.394 11 C 0.400 3.600 12 O -0.395 6.395 13 N -0.321 5.321 14 C 0.159 3.841 15 C -0.349 4.349 16 C 0.123 3.877 17 C -0.473 4.473 18 H 0.113 0.887 19 C -0.134 4.134 20 N -0.436 5.436 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.171 1.171 25 C -0.293 4.293 26 C -0.023 4.023 27 N -0.267 5.267 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.269 0.731 41 H 0.221 0.779 42 H 0.236 0.764 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.962 21.352 10.141 23.657 hybrid contribution -0.623 -1.574 2.113 2.708 sum 0.339 19.777 12.255 23.269 Atomic orbital electron populations 1.21864 0.95302 1.01991 1.01198 1.21606 0.95810 0.96056 0.99507 1.21951 1.01583 0.95503 1.01516 1.19806 0.94766 0.80065 0.92008 1.22479 0.93753 1.01900 1.05277 1.21938 1.04981 1.00659 0.88611 1.23528 0.76700 0.83974 0.84615 1.90795 1.35073 1.25685 1.86515 1.84535 1.73067 1.58104 1.17667 1.45184 1.57208 1.11242 1.25732 1.15924 0.80842 0.80511 0.82747 1.90942 1.38545 1.74304 1.35757 1.42677 1.58499 1.10869 1.20047 1.17776 0.92654 0.86883 0.86752 1.21330 1.13230 0.95065 1.05268 1.17713 0.87532 0.92784 0.89636 1.19471 1.34885 0.96877 0.96096 0.88676 1.26120 0.91997 0.94209 1.01052 1.69592 1.30023 1.11862 1.32105 0.86242 0.81618 0.77523 0.80006 1.19768 1.21991 1.17092 1.21733 1.05938 0.98413 1.03256 1.21648 0.96229 0.90644 0.93804 1.67330 1.19832 1.36796 1.02700 0.93104 0.92594 0.92483 0.87449 0.92942 0.92094 0.92379 0.91202 0.92415 0.89430 0.85928 0.86799 0.73118 0.77921 0.76378 0.87270 0.90321 0.87215 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.69 37.16 0.32 -1.12 16 2 C -0.11 -1.22 2.08 -90.62 -0.19 -1.40 16 3 C -0.15 -1.23 8.47 37.16 0.31 -0.92 16 4 C 0.22 2.44 0.12 -131.81 -0.02 2.42 16 5 C -0.18 -2.24 7.79 37.16 0.29 -1.95 16 6 C -0.12 -0.94 4.23 -27.88 -0.12 -1.06 16 7 C 0.47 4.14 7.53 36.01 0.27 4.42 16 8 O -0.49 -6.10 13.45 -18.75 -0.25 -6.35 16 9 O -0.52 -3.36 13.42 -39.26 -0.53 -3.89 16 10 N -0.74 -9.79 3.36 -52.42 -0.18 -9.97 16 11 C 0.70 12.69 7.94 -86.93 -0.69 12.00 16 12 O -0.52 -11.12 10.80 5.29 0.06 -11.07 16 13 N -0.67 -12.90 5.40 -15.86 -0.09 -12.98 16 14 C 0.39 9.02 7.42 -154.67 -1.15 7.88 16 15 C -0.32 -7.79 7.01 -38.46 -0.27 -8.06 16 16 C 0.13 3.36 5.11 -106.55 -0.54 2.81 16 17 C -0.44 -11.83 9.67 -37.65 -0.36 -12.20 16 18 H 0.10 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.09 2.21 5.49 -17.35 -0.10 2.11 16 20 N -0.81 -21.32 13.92 55.55 0.77 -20.55 16 21 Si 0.92 20.80 24.47 -169.99 -4.16 16.64 16 22 H -0.27 -5.77 6.52 56.52 0.37 -5.40 16 23 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.25 -5.92 6.81 56.52 0.39 -5.53 16 25 C -0.27 -6.36 9.85 -39.07 -0.38 -6.74 16 26 C 0.13 2.93 11.10 -18.04 -0.20 2.73 16 27 N -0.55 -13.28 7.86 -12.75 -0.10 -13.38 16 28 H 0.05 0.38 6.30 -51.93 -0.33 0.05 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.67 7.61 -51.93 -0.40 0.27 16 31 H 0.11 1.63 6.16 -51.93 -0.32 1.31 16 32 H 0.05 0.32 6.29 -51.93 -0.33 0.00 16 33 H 0.06 0.52 6.72 -51.93 -0.35 0.17 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.98 5.90 -51.93 -0.31 0.67 16 36 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 37 H 0.09 1.43 6.16 -51.93 -0.32 1.11 16 38 H 0.12 0.68 6.63 -51.93 -0.34 0.34 16 39 H 0.11 0.69 6.13 -51.93 -0.32 0.37 16 40 H 0.41 1.21 9.10 45.56 0.41 1.63 16 41 H 0.39 4.47 7.45 -40.82 -0.30 4.16 16 42 H 0.40 6.46 8.71 -40.82 -0.36 6.11 16 43 H 0.11 2.54 4.55 -52.49 -0.24 2.30 16 44 H 0.29 6.82 8.29 -40.82 -0.34 6.48 16 45 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 46 H 0.13 2.52 8.06 -52.48 -0.42 2.09 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -33.49 358.65 -7.01 -40.50 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.13 Total: 14.72 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.82 Total: 0.91 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.41 Total: -56.88 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.72 Total: -21.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.16 Total: 16.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.49 -7.01 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573491156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.945 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds