Wall clock time and date at job start Tue Mar 31 2020 18:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47373 * 2 1 4 4 C 1.53005 * 109.46569 * 119.99866 * 2 1 3 5 5 C 1.53007 * 109.47021 * 180.32770 * 4 2 1 6 6 C 1.52998 * 109.47018 * 300.32336 * 4 2 1 7 7 C 1.50708 * 109.46903 * 174.29355 * 6 4 2 8 8 O 1.20823 * 120.00033 * 3.44426 * 7 6 4 9 9 O 1.34232 * 119.99886 * 183.44776 * 7 6 4 10 10 N 1.46498 * 109.47221 * 60.32847 * 4 2 1 11 11 C 1.34773 * 120.00262 * 59.99660 * 10 4 2 12 12 O 1.21584 * 120.00015 * 0.02562 * 11 10 4 13 13 N 1.34771 * 120.00103 * 180.02562 * 11 10 4 14 14 C 1.39469 * 120.00075 * 174.94481 * 13 11 10 15 15 C 1.38648 * 119.64706 * 185.34699 * 14 13 11 16 16 C 1.40816 * 118.67175 * 179.97438 * 15 14 13 17 17 C 1.41540 * 120.99604 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99727 * 146.07223 * 17 16 15 19 19 C 1.40029 * 120.00377 * 326.07382 * 17 16 15 20 20 N 1.30740 * 120.00508 * 170.86057 * 19 17 16 21 21 Si 1.86806 * 119.99629 * 350.85864 * 19 17 16 22 22 H 1.48502 * 109.47051 * 87.90005 * 21 19 17 23 23 H 1.48506 * 109.46842 * 207.90130 * 21 19 17 24 24 H 1.48498 * 109.47136 * 327.90046 * 21 19 17 25 25 C 1.41162 * 118.00635 * 0.02562 * 16 15 14 26 26 C 1.36595 * 119.12738 * 0.02562 * 25 16 15 27 27 N 1.32065 * 121.25856 * 359.73800 * 26 25 16 28 28 H 1.08995 * 109.46960 * 300.00402 * 1 2 3 29 29 H 1.09008 * 109.46543 * 59.99815 * 1 2 3 30 30 H 1.08995 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47180 * 239.99563 * 2 1 3 32 32 H 1.09004 * 109.47342 * 65.38076 * 3 2 1 33 33 H 1.09002 * 109.47250 * 185.37901 * 3 2 1 34 34 H 1.09001 * 109.46870 * 305.37960 * 3 2 1 35 35 H 1.08998 * 109.47002 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47082 * 59.99424 * 5 4 2 37 37 H 1.09004 * 109.46658 * 299.99875 * 5 4 2 38 38 H 1.08997 * 109.47756 * 294.29213 * 6 4 2 39 39 H 1.09005 * 109.46975 * 54.29874 * 6 4 2 40 40 H 0.96698 * 116.99537 * 180.02562 * 9 7 6 41 41 H 0.96999 * 119.99936 * 239.99830 * 10 4 2 42 42 H 0.97000 * 120.00325 * 354.94658 * 13 11 10 43 43 H 1.07998 * 120.66358 * 0.02562 * 15 14 13 44 44 H 0.96999 * 120.00058 * 180.02562 * 20 19 17 45 45 H 1.08005 * 120.43802 * 180.02562 * 25 16 15 46 46 H 1.08003 * 119.36874 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7142 1.2536 6 6 1.5232 -0.0047 2.4985 7 6 1.9071 -0.7925 3.7245 8 8 2.5831 -1.7881 3.6157 9 8 1.4980 -0.3883 4.9374 10 7 1.5580 -2.1047 1.2454 11 6 1.8902 -2.9312 0.2340 12 8 2.5902 -2.5287 -0.6751 13 7 1.4464 -4.2037 0.2301 14 6 1.7010 -5.0277 -0.8659 15 6 1.1476 -6.2982 -0.9121 16 6 1.4177 -7.1126 -2.0286 17 6 0.8787 -8.4177 -2.1263 18 1 0.6033 -8.8174 -3.0911 19 6 0.7025 -9.1907 -0.9720 20 7 0.0442 -10.3185 -1.0347 21 14 1.4081 -8.6104 0.6574 22 1 0.4222 -7.7343 1.3398 23 1 1.7034 -9.7858 1.5156 24 1 2.6597 -7.8497 0.4120 25 6 2.2430 -6.5888 -3.0470 26 6 2.7440 -5.3252 -2.9127 27 7 2.4662 -4.5869 -1.8535 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.7576 1.9278 0.9343 33 1 3.1258 1.4439 -0.0963 34 1 1.6002 1.9833 -0.8379 35 1 3.9332 -1.2284 2.1434 36 1 3.9285 0.3151 1.2564 37 1 3.9380 -1.2247 0.3636 38 1 1.9628 0.9912 2.5542 39 1 0.4377 0.0797 2.4460 40 1 1.7696 -0.9258 5.6939 41 1 0.9998 -2.4259 1.9708 42 1 0.9499 -4.5466 0.9896 43 1 0.5212 -6.6556 -0.1082 44 1 -0.0782 -10.8537 -0.2350 45 1 2.4753 -7.1794 -3.9209 46 1 3.3762 -4.9207 -3.6894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573491156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:12 Heat of formation + Delta-G solvation = -101.354868 kcal Electronic energy + Delta-G solvation = -30039.802277 eV Core-core repulsion = 25928.953466 eV Total energy + Delta-G solvation = -4110.848811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15947 -41.17723 -40.18593 -38.50739 -36.96685 -36.03138 -35.49579 -34.20704 -33.18205 -31.98035 -30.37633 -29.66107 -27.93035 -27.56993 -24.78911 -24.17381 -23.36956 -22.77009 -21.73987 -19.96946 -19.74995 -19.15409 -18.98863 -18.19048 -17.71825 -17.20920 -16.94587 -16.48012 -16.41373 -16.10699 -15.86793 -15.41789 -15.23002 -15.14014 -14.87010 -14.75658 -14.50576 -13.92415 -13.85323 -13.80846 -13.44506 -13.31152 -13.07526 -12.78692 -12.69345 -12.66059 -12.56280 -12.48377 -12.20780 -11.96422 -11.86087 -11.85391 -11.58611 -11.47987 -11.28360 -11.19601 -10.79989 -10.11918 -9.90594 -9.65279 -8.97598 -8.92488 -6.73442 0.60214 0.75968 1.20751 1.25832 1.35693 1.44286 1.58375 2.07127 2.13286 2.29914 2.71563 3.07738 3.43728 3.51674 3.88595 3.92906 4.00594 4.28120 4.28858 4.42472 4.47331 4.53143 4.59914 4.62923 4.66039 4.74189 4.75772 4.84773 4.87075 4.97084 5.07738 5.10719 5.13452 5.28724 5.32779 5.36375 5.49587 5.51493 5.54881 5.70680 5.73516 5.74631 5.86987 6.11578 6.28930 6.51985 6.69448 6.94789 7.05025 7.57407 7.80562 8.13292 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003465 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.527055 B = 8079.671072 C = 9231.395897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.144 4.144 4 C 0.215 3.785 5 C -0.170 4.170 6 C -0.118 4.118 7 C 0.477 3.523 8 O -0.537 6.537 9 O -0.512 6.512 10 N -0.717 5.717 11 C 0.695 3.305 12 O -0.557 6.557 13 N -0.670 5.670 14 C 0.387 3.613 15 C -0.329 4.329 16 C 0.118 3.882 17 C -0.472 4.472 18 H 0.067 0.933 19 C 0.054 3.946 20 N -0.843 5.843 21 Si 0.967 3.033 22 H -0.246 1.246 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.280 4.280 26 C 0.130 3.870 27 N -0.563 5.563 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.426 0.574 41 H 0.399 0.601 42 H 0.416 0.584 43 H 0.118 0.882 44 H 0.297 0.703 45 H 0.122 0.878 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 23.450 13.964 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.129 3.871 5 C -0.227 4.227 6 C -0.155 4.155 7 C 0.321 3.679 8 O -0.427 6.427 9 O -0.326 6.326 10 N -0.374 5.374 11 C 0.395 3.605 12 O -0.431 6.431 13 N -0.319 5.319 14 C 0.156 3.844 15 C -0.355 4.355 16 C 0.109 3.891 17 C -0.503 4.503 18 H 0.086 0.914 19 C -0.162 4.162 20 N -0.469 5.469 21 Si 0.792 3.208 22 H -0.171 1.171 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.304 4.304 26 C -0.022 4.022 27 N -0.283 5.283 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.172 0.828 39 H 0.157 0.843 40 H 0.288 0.712 41 H 0.234 0.766 42 H 0.253 0.747 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.140 0.860 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.357 24.481 12.939 27.692 hybrid contribution -0.403 -2.402 1.239 2.733 sum -0.047 22.078 14.178 26.239 Atomic orbital electron populations 1.21848 0.94217 1.01032 1.02920 1.21479 0.96630 0.97281 0.97278 1.21935 1.01154 0.93596 1.03462 1.20015 0.93812 0.78957 0.94271 1.22385 0.95127 1.02857 1.02377 1.21952 1.06532 1.01044 0.85985 1.23662 0.75653 0.83173 0.85461 1.90802 1.37131 1.27621 1.87143 1.84492 1.72430 1.58112 1.17567 1.45098 1.56279 1.11615 1.24391 1.16123 0.80597 0.80406 0.83422 1.90934 1.39972 1.74780 1.37368 1.42646 1.58618 1.11146 1.19488 1.17974 0.91836 0.87170 0.87399 1.21397 1.13507 0.95381 1.05170 1.17893 0.87790 0.92539 0.90862 1.19453 1.37214 0.98084 0.95592 0.91450 1.26721 0.91950 0.94112 1.03435 1.69608 1.31049 1.12733 1.33521 0.85502 0.80415 0.77778 0.77153 1.17096 1.20358 1.19357 1.21926 1.05943 0.99048 1.03440 1.22128 0.95834 0.90215 0.94052 1.67475 1.20165 1.37331 1.03310 0.89622 0.92663 0.94743 0.92323 0.89638 0.92680 0.92074 0.92516 0.89647 0.93640 0.82827 0.84292 0.71243 0.76595 0.74743 0.86466 0.89242 0.86041 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.69 71.98 0.63 -1.85 16 2 C -0.11 -2.19 2.08 -10.79 -0.02 -2.21 16 3 C -0.14 -1.96 8.47 71.98 0.61 -1.35 16 4 C 0.22 4.33 0.12 3.61 0.00 4.33 16 5 C -0.17 -4.16 7.79 71.98 0.56 -3.60 16 6 C -0.12 -1.28 4.23 29.85 0.13 -1.15 16 7 C 0.48 6.79 7.53 71.24 0.54 7.32 16 8 O -0.54 -12.20 13.45 21.97 0.30 -11.90 16 9 O -0.51 -4.57 13.42 -51.44 -0.69 -5.26 16 10 N -0.72 -18.20 3.36 -438.01 -1.47 -19.67 16 11 C 0.69 25.11 7.94 179.06 1.42 26.54 16 12 O -0.56 -24.13 10.80 -3.98 -0.04 -24.18 16 13 N -0.67 -25.35 5.40 -322.37 -1.74 -27.09 16 14 C 0.39 17.95 7.42 132.76 0.99 18.94 16 15 C -0.33 -15.87 7.01 23.00 0.16 -15.71 16 16 C 0.12 6.10 5.11 -21.12 -0.11 5.99 16 17 C -0.47 -26.15 9.67 23.52 0.23 -25.92 16 18 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 19 C 0.05 2.83 5.49 85.29 0.47 3.30 16 20 N -0.84 -45.02 13.92 21.84 0.30 -44.72 16 21 Si 0.97 42.46 24.47 68.60 1.68 44.14 16 22 H -0.25 -9.72 6.52 99.48 0.65 -9.07 16 23 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -12.70 6.81 99.48 0.68 -12.02 16 25 C -0.28 -13.37 9.85 22.60 0.22 -13.15 16 26 C 0.13 5.89 11.10 84.27 0.94 6.83 16 27 N -0.56 -27.42 7.86 -194.26 -1.53 -28.94 16 28 H 0.09 0.87 6.30 -2.39 -0.02 0.85 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.03 0.74 7.61 -2.39 -0.02 0.73 16 31 H 0.06 1.81 6.16 -2.38 -0.01 1.80 16 32 H 0.08 0.60 6.29 -2.39 -0.02 0.59 16 33 H 0.05 0.82 6.72 -2.39 -0.02 0.80 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.55 5.90 -2.39 -0.01 1.53 16 36 H 0.08 1.55 6.55 -2.39 -0.02 1.53 16 37 H 0.04 1.51 6.16 -2.39 -0.01 1.50 16 38 H 0.15 0.80 6.63 -2.39 -0.02 0.79 16 39 H 0.14 0.89 6.13 -2.38 -0.01 0.88 16 40 H 0.43 1.06 9.10 -74.06 -0.67 0.39 16 41 H 0.40 8.40 7.45 -92.71 -0.69 7.71 16 42 H 0.42 12.87 8.71 -92.71 -0.81 12.06 16 43 H 0.12 5.36 4.55 -2.91 -0.01 5.35 16 44 H 0.30 14.19 8.29 -92.71 -0.77 13.42 16 45 H 0.12 5.37 8.06 -2.91 -0.02 5.35 16 46 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 Total: -1.00 -76.45 358.65 2.37 -74.08 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -1.18 Total: 35.24 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.75 Total: 8.31 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -4.43 Total: -120.42 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.44 Total: -41.34 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.68 Total: 44.14 kcal Total: -76.45 2.37 -74.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573491156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.279 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds