Wall clock time and date at job start Tue Mar 31 2020 18:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 C 1.52999 * 109.46647 * 119.99900 * 2 1 3 5 5 C 1.53009 * 109.46717 * 174.99870 * 4 2 1 6 6 H 1.08992 * 115.54777 * 29.41627 * 5 4 2 7 7 C 1.52998 * 117.49522 * 243.74641 * 5 4 2 8 8 C 1.53001 * 117.49403 * 175.08674 * 5 4 2 9 9 H 1.08997 * 117.50338 * 0.02562 * 8 5 4 10 10 C 1.50700 * 117.49592 * 214.97726 * 8 5 4 11 11 O 1.21276 * 119.99932 * 0.02562 * 10 8 5 12 12 N 1.34772 * 120.00109 * 180.02562 * 10 8 5 13 13 C 1.38484 * 120.00004 * 175.69875 * 12 10 8 14 14 C 1.39239 * 126.43413 * 110.09987 * 13 12 10 15 15 C 1.46743 * 126.51027 * 359.97396 * 14 13 12 16 16 O 1.21592 * 120.00607 * 0.02562 * 15 14 13 17 17 O 1.34831 * 119.99783 * 180.02562 * 15 14 13 18 18 C 1.41471 * 106.97155 * 179.97438 * 14 13 12 19 19 N 1.30306 * 108.17163 * 359.97438 * 18 14 13 20 20 N 1.34767 * 126.43356 * 289.78227 * 13 12 10 21 21 C 1.46501 * 125.73914 * 359.97438 * 20 13 12 22 22 C 1.50708 * 109.47231 * 92.27166 * 21 20 13 23 23 H 1.07998 * 119.99589 * 359.97438 * 22 21 20 24 24 C 1.37870 * 120.00053 * 179.97438 * 22 21 20 25 25 N 1.31519 * 120.00439 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99804 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47147 * 60.00283 * 26 24 22 28 28 H 1.48506 * 109.46938 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47222 * 300.00100 * 26 24 22 30 30 H 1.09003 * 109.47218 * 300.00203 * 1 2 3 31 31 H 1.09001 * 109.46683 * 60.00215 * 1 2 3 32 32 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47069 * 240.00046 * 2 1 3 34 34 H 1.08998 * 109.46986 * 300.00293 * 3 2 1 35 35 H 1.09003 * 109.47165 * 59.99764 * 3 2 1 36 36 H 1.08995 * 109.47247 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47162 * 55.00146 * 4 2 1 38 38 H 1.08994 * 109.47129 * 294.99767 * 4 2 1 39 39 H 1.08995 * 117.50107 * 0.02562 * 7 5 4 40 40 H 1.09000 * 117.49421 * 144.99990 * 7 5 4 41 41 H 0.96998 * 120.00261 * 355.69108 * 12 10 8 42 42 H 0.96698 * 116.99965 * 180.02562 * 17 15 14 43 43 H 1.08001 * 125.91258 * 179.97438 * 18 14 13 44 44 H 1.09004 * 109.47358 * 212.26907 * 21 20 13 45 45 H 1.09004 * 109.47723 * 332.26837 * 21 20 13 46 46 H 0.96994 * 120.00085 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8311 1.1880 6 1 4.0720 -0.0346 0.6436 7 6 4.1695 -2.2345 1.1125 8 6 4.2800 -1.4216 2.4049 9 1 3.6642 -1.7322 3.2489 10 6 5.6320 -0.8578 2.7587 11 8 6.1129 0.0308 2.0880 12 7 6.3068 -1.3412 3.8205 13 6 7.5861 -0.8864 4.0934 14 6 7.9671 -0.0831 5.1649 15 6 7.0900 0.4421 6.2177 16 8 5.9022 0.1823 6.2052 17 8 7.6012 1.2126 7.1989 18 6 9.3605 0.1306 5.0458 19 7 9.7788 -0.4982 3.9839 20 7 8.6970 -1.1433 3.3750 21 6 8.7608 -1.9594 2.1601 22 6 8.5951 -1.0747 0.9513 23 1 8.4558 -0.0110 1.0758 24 6 8.6214 -1.6232 -0.3133 25 7 8.7905 -2.9187 -0.4648 26 14 8.4153 -0.5267 -1.8114 27 1 9.5014 0.4858 -1.8370 28 1 8.4801 -1.3539 -3.0430 29 1 7.1001 0.1598 -1.7453 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6053 -1.7197 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.4810 -3.0794 1.1060 40 1 5.0746 -2.3612 0.5184 41 1 5.8964 -2.0074 4.3937 42 1 6.9845 1.5349 7.8703 43 1 9.9717 0.7140 5.7185 44 1 9.7258 -2.4640 2.1115 45 1 7.9631 -2.7020 2.1788 46 1 8.8085 -3.3046 -1.3545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573516291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:05 Heat of formation + Delta-G solvation = -44.885511 kcal Electronic energy + Delta-G solvation = -29757.239649 eV Core-core repulsion = 25648.839534 eV Total energy + Delta-G solvation = -4108.400116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17316 -39.54843 -39.19214 -37.43716 -35.69491 -34.95714 -34.34340 -33.76455 -31.71332 -29.32346 -27.69434 -27.38032 -27.15883 -24.70022 -23.55567 -22.71555 -21.45908 -20.68653 -20.09323 -19.77714 -19.45991 -17.65699 -17.41180 -17.14008 -16.54155 -15.92073 -15.33066 -15.22382 -14.95584 -14.65514 -14.52820 -14.18777 -13.83682 -13.71472 -13.59070 -13.23397 -13.00169 -12.85538 -12.52681 -12.27443 -12.22756 -11.97015 -11.78572 -11.60827 -11.27974 -11.08620 -11.03010 -10.96742 -10.83655 -10.75452 -10.56391 -10.29645 -10.05302 -10.02674 -9.92712 -9.83990 -9.56850 -9.32792 -8.62711 -8.60754 -8.16371 -6.25875 -4.29439 1.68838 2.54134 2.77752 2.90773 3.27893 3.29259 3.35860 3.40379 3.55768 3.76235 4.03965 4.34162 4.61821 4.82038 4.86667 5.00804 5.07619 5.08724 5.17034 5.23378 5.34925 5.44637 5.47099 5.56063 5.67290 5.69072 5.74489 5.80000 5.84813 5.90166 6.00480 6.13148 6.17379 6.22159 6.33470 6.36678 6.37532 6.56475 6.72818 6.75618 6.81891 7.03657 7.49300 7.65818 7.77214 7.81556 8.16639 8.31771 8.59454 8.78577 9.36064 10.82754 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007748 B = 0.005139 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.782638 B = 5447.695457 C = 8151.187487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.083 4.083 5 C -0.120 4.120 6 H 0.121 0.879 7 C -0.145 4.145 8 C -0.184 4.184 9 H 0.122 0.878 10 C 0.551 3.449 11 O -0.485 6.485 12 N -0.655 5.655 13 C 0.388 3.612 14 C -0.313 4.313 15 C 0.566 3.434 16 O -0.537 6.537 17 O -0.517 6.517 18 C 0.088 3.912 19 N -0.279 5.279 20 N -0.301 5.301 21 C 0.251 3.749 22 C -0.518 4.518 23 H 0.072 0.928 24 C 0.067 3.933 25 N -0.897 5.897 26 Si 0.904 3.096 27 H -0.275 1.275 28 H -0.286 1.286 29 H -0.271 1.271 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.416 0.584 42 H 0.406 0.594 43 H 0.190 0.810 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 2.009 8.129 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.120 4.120 5 C -0.138 4.138 6 H 0.139 0.861 7 C -0.182 4.182 8 C -0.205 4.205 9 H 0.140 0.860 10 C 0.337 3.663 11 O -0.355 6.355 12 N -0.309 5.309 13 C 0.158 3.842 14 C -0.329 4.329 15 C 0.413 3.587 16 O -0.428 6.428 17 O -0.328 6.328 18 C -0.098 4.098 19 N -0.100 5.100 20 N -0.080 5.080 21 C 0.134 3.866 22 C -0.557 4.557 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.536 5.536 26 Si 0.731 3.269 27 H -0.200 1.200 28 H -0.211 1.211 29 H -0.197 1.197 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.255 0.745 42 H 0.263 0.737 43 H 0.207 0.793 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.011 1.914 6.245 12.803 hybrid contribution -1.271 0.491 0.473 1.442 sum -12.282 2.405 6.718 14.204 Atomic orbital electron populations 1.21841 0.95449 1.01473 1.01587 1.21072 0.95194 0.96592 0.98482 1.21913 1.01966 0.95684 1.01303 1.21266 0.92206 1.00495 0.98073 1.22520 0.94709 0.98078 0.98515 0.86109 1.23199 1.03853 0.94360 0.96775 1.22125 0.95678 1.08136 0.94558 0.86006 1.19694 0.85566 0.82279 0.78722 1.90808 1.67872 1.28016 1.48774 1.42358 1.11416 1.45665 1.31452 1.17651 0.82036 0.93763 0.90759 1.18754 0.94990 1.16350 1.02825 1.19545 0.85468 0.74384 0.79315 1.90842 1.17129 1.58742 1.76089 1.84587 1.46273 1.64075 1.37841 1.23845 0.92662 0.97978 0.95356 1.77250 1.09957 1.13459 1.09379 1.49936 1.02730 1.34398 1.20933 1.19937 1.00149 0.89391 0.77138 1.21185 1.50454 0.94923 0.89102 0.90991 1.24834 0.94553 0.95212 0.98919 1.69912 1.49435 1.10460 1.23758 0.86432 0.79355 0.80267 0.80862 1.20020 1.21149 1.19655 0.92805 0.92850 0.92835 0.90952 0.93049 0.92821 0.91877 0.91690 0.91466 0.88046 0.87184 0.74510 0.73726 0.79292 0.92228 0.93096 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.09 -1.01 2.92 -90.62 -0.26 -1.27 16 3 C -0.15 -1.72 9.01 37.16 0.33 -1.39 16 4 C -0.08 -0.92 4.96 -26.73 -0.13 -1.05 16 5 C -0.12 -1.71 5.03 -90.62 -0.46 -2.16 16 6 H 0.12 2.05 5.91 -51.93 -0.31 1.75 16 7 C -0.14 -2.09 9.88 -26.69 -0.26 -2.35 16 8 C -0.18 -2.72 5.91 -91.73 -0.54 -3.27 16 9 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 10 C 0.55 10.64 7.47 -10.99 -0.08 10.56 16 11 O -0.49 -11.55 14.54 5.56 0.08 -11.47 16 12 N -0.65 -11.84 4.43 -11.08 -0.05 -11.89 16 13 C 0.39 7.92 6.49 -153.42 -1.00 6.93 16 14 C -0.31 -5.83 6.15 -104.86 -0.64 -6.47 16 15 C 0.57 9.34 8.31 34.17 0.28 9.62 16 16 O -0.54 -9.69 17.08 -19.34 -0.33 -10.02 16 17 O -0.52 -6.39 13.28 -40.85 -0.54 -6.93 16 18 C 0.09 1.57 11.86 -16.97 -0.20 1.37 16 19 N -0.28 -5.98 12.47 30.88 0.39 -5.60 16 20 N -0.30 -6.82 3.58 -61.12 -0.22 -7.04 16 21 C 0.25 6.27 6.00 -5.19 -0.03 6.24 16 22 C -0.52 -14.28 8.17 -34.44 -0.28 -14.56 16 23 H 0.07 2.15 7.38 -52.49 -0.39 1.76 16 24 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 25 N -0.90 -24.86 13.29 55.43 0.74 -24.12 16 26 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 27 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 37 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 40 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 41 H 0.42 6.09 8.82 -40.82 -0.36 5.73 16 42 H 0.41 2.98 9.11 45.56 0.42 3.40 16 43 H 0.19 2.57 8.06 -52.49 -0.42 2.14 16 44 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.05 1.28 8.02 -51.93 -0.42 0.86 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -33.46 395.68 -8.03 -41.49 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.00 Total: 9.78 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.03 Total: 3.01 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.85 Total: -48.65 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.79 Total: -28.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.46 -8.03 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573516291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.400 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds