Wall clock time and date at job start Tue Mar 31 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 C 1.52999 * 109.46647 * 119.99900 * 2 1 3 5 5 C 1.53009 * 109.46717 * 174.99870 * 4 2 1 6 6 H 1.08992 * 115.54777 * 29.41627 * 5 4 2 7 7 C 1.52998 * 117.49522 * 243.74641 * 5 4 2 8 8 C 1.53001 * 117.49403 * 175.08674 * 5 4 2 9 9 H 1.08997 * 117.50338 * 0.02562 * 8 5 4 10 10 C 1.50700 * 117.49592 * 214.97726 * 8 5 4 11 11 O 1.21276 * 119.99932 * 0.02562 * 10 8 5 12 12 N 1.34772 * 120.00109 * 180.02562 * 10 8 5 13 13 C 1.38484 * 120.00004 * 175.69875 * 12 10 8 14 14 C 1.39239 * 126.43413 * 110.09987 * 13 12 10 15 15 C 1.46743 * 126.51027 * 359.97396 * 14 13 12 16 16 O 1.21592 * 120.00607 * 0.02562 * 15 14 13 17 17 O 1.34831 * 119.99783 * 180.02562 * 15 14 13 18 18 C 1.41471 * 106.97155 * 179.97438 * 14 13 12 19 19 N 1.30306 * 108.17163 * 359.97438 * 18 14 13 20 20 N 1.34767 * 126.43356 * 289.78227 * 13 12 10 21 21 C 1.46501 * 125.73914 * 359.97438 * 20 13 12 22 22 C 1.50708 * 109.47231 * 92.27166 * 21 20 13 23 23 H 1.07998 * 119.99589 * 359.97438 * 22 21 20 24 24 C 1.37870 * 120.00053 * 179.97438 * 22 21 20 25 25 N 1.31519 * 120.00439 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99804 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47147 * 60.00283 * 26 24 22 28 28 H 1.48506 * 109.46938 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47222 * 300.00100 * 26 24 22 30 30 H 1.09003 * 109.47218 * 300.00203 * 1 2 3 31 31 H 1.09001 * 109.46683 * 60.00215 * 1 2 3 32 32 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47069 * 240.00046 * 2 1 3 34 34 H 1.08998 * 109.46986 * 300.00293 * 3 2 1 35 35 H 1.09003 * 109.47165 * 59.99764 * 3 2 1 36 36 H 1.08995 * 109.47247 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47162 * 55.00146 * 4 2 1 38 38 H 1.08994 * 109.47129 * 294.99767 * 4 2 1 39 39 H 1.08995 * 117.50107 * 0.02562 * 7 5 4 40 40 H 1.09000 * 117.49421 * 144.99990 * 7 5 4 41 41 H 0.96998 * 120.00261 * 355.69108 * 12 10 8 42 42 H 0.96698 * 116.99965 * 180.02562 * 17 15 14 43 43 H 1.08001 * 125.91258 * 179.97438 * 18 14 13 44 44 H 1.09004 * 109.47358 * 212.26907 * 21 20 13 45 45 H 1.09004 * 109.47723 * 332.26837 * 21 20 13 46 46 H 0.96994 * 120.00085 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8311 1.1880 6 1 4.0720 -0.0346 0.6436 7 6 4.1695 -2.2345 1.1125 8 6 4.2800 -1.4216 2.4049 9 1 3.6642 -1.7322 3.2489 10 6 5.6320 -0.8578 2.7587 11 8 6.1129 0.0308 2.0880 12 7 6.3068 -1.3412 3.8205 13 6 7.5861 -0.8864 4.0934 14 6 7.9671 -0.0831 5.1649 15 6 7.0900 0.4421 6.2177 16 8 5.9022 0.1823 6.2052 17 8 7.6012 1.2126 7.1989 18 6 9.3605 0.1306 5.0458 19 7 9.7788 -0.4982 3.9839 20 7 8.6970 -1.1433 3.3750 21 6 8.7608 -1.9594 2.1601 22 6 8.5951 -1.0747 0.9513 23 1 8.4558 -0.0110 1.0758 24 6 8.6214 -1.6232 -0.3133 25 7 8.7905 -2.9187 -0.4648 26 14 8.4153 -0.5267 -1.8114 27 1 9.5014 0.4858 -1.8370 28 1 8.4801 -1.3539 -3.0430 29 1 7.1001 0.1598 -1.7453 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6053 -1.7197 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.4810 -3.0794 1.1060 40 1 5.0746 -2.3612 0.5184 41 1 5.8964 -2.0074 4.3937 42 1 6.9845 1.5349 7.8703 43 1 9.9717 0.7140 5.7185 44 1 9.7258 -2.4640 2.1115 45 1 7.9631 -2.7020 2.1788 46 1 8.8085 -3.3046 -1.3545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573516291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:04 Heat of formation + Delta-G solvation = -66.377412 kcal Electronic energy + Delta-G solvation = -29758.171608 eV Core-core repulsion = 25648.839534 eV Total energy + Delta-G solvation = -4109.332075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.70957 -40.93820 -40.50254 -38.60107 -36.89754 -36.07020 -35.83648 -35.71975 -33.57456 -30.83148 -29.38651 -28.50421 -28.01888 -26.22284 -25.24311 -24.22215 -22.65647 -22.07912 -21.36625 -21.06178 -20.70547 -19.11079 -18.90532 -18.69703 -18.29820 -17.35443 -16.74998 -16.59924 -16.34507 -16.18511 -15.75264 -15.62000 -15.29339 -15.14324 -14.75115 -14.65339 -14.31533 -14.18026 -13.96100 -13.75577 -13.51653 -13.10247 -13.08661 -12.95913 -12.84490 -12.53315 -12.43218 -12.37376 -12.32108 -12.00978 -11.92176 -11.69400 -11.49052 -11.43676 -11.25948 -11.07349 -11.00540 -10.80561 -10.76557 -10.29318 -9.74043 -8.38379 -6.47797 0.18889 1.06051 1.24113 1.28734 1.30543 1.40212 1.47137 2.00650 2.18782 2.29486 2.40875 2.83573 2.94226 3.51112 3.68787 3.72048 3.82019 4.04126 4.09818 4.10943 4.15709 4.20953 4.29841 4.46868 4.66407 4.75709 4.81155 4.82200 4.83432 4.88087 4.92948 4.94225 5.01355 5.02568 5.11431 5.15316 5.26743 5.41424 5.49985 5.50454 5.53053 5.54800 5.68455 5.72744 5.90644 6.23707 6.55635 6.65708 7.11397 7.16381 7.20682 8.69795 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007748 B = 0.005139 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.782638 B = 5447.695457 C = 8151.187487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.074 4.074 5 C -0.117 4.117 6 H 0.084 0.916 7 C -0.139 4.139 8 C -0.181 4.181 9 H 0.163 0.837 10 C 0.542 3.458 11 O -0.540 6.540 12 N -0.646 5.646 13 C 0.374 3.626 14 C -0.317 4.317 15 C 0.576 3.424 16 O -0.553 6.553 17 O -0.500 6.500 18 C 0.107 3.893 19 N -0.316 5.316 20 N -0.328 5.328 21 C 0.271 3.729 22 C -0.525 4.525 23 H 0.042 0.958 24 C 0.032 3.968 25 N -0.914 5.914 26 Si 0.952 3.048 27 H -0.275 1.275 28 H -0.267 1.267 29 H -0.280 1.280 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.066 0.934 41 H 0.432 0.568 42 H 0.432 0.568 43 H 0.235 0.765 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.444 2.111 9.676 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.209 4.209 4 C -0.111 4.111 5 C -0.136 4.136 6 H 0.102 0.898 7 C -0.176 4.176 8 C -0.202 4.202 9 H 0.180 0.820 10 C 0.331 3.669 11 O -0.414 6.414 12 N -0.301 5.301 13 C 0.145 3.855 14 C -0.333 4.333 15 C 0.422 3.578 16 O -0.446 6.446 17 O -0.313 6.313 18 C -0.080 4.080 19 N -0.137 5.137 20 N -0.107 5.107 21 C 0.153 3.847 22 C -0.564 4.564 23 H 0.061 0.939 24 C -0.169 4.169 25 N -0.553 5.553 26 Si 0.778 3.222 27 H -0.201 1.201 28 H -0.191 1.191 29 H -0.205 1.205 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.159 0.841 40 H 0.085 0.915 41 H 0.274 0.726 42 H 0.293 0.707 43 H 0.251 0.749 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.101 2.002 7.853 15.406 hybrid contribution -0.579 0.565 0.141 0.822 sum -13.681 2.567 7.995 16.052 Atomic orbital electron populations 1.21789 0.93426 1.02440 1.02132 1.21082 0.96778 0.95543 0.98036 1.21913 1.00068 0.96932 1.01988 1.21272 0.89236 1.02102 0.98485 1.22521 0.96764 0.96737 0.97531 0.89769 1.23175 1.02894 0.95919 0.95662 1.22263 0.93685 1.08257 0.96013 0.81977 1.20582 0.86844 0.81484 0.77967 1.90781 1.69521 1.30635 1.50480 1.42424 1.10624 1.45610 1.31472 1.18122 0.82300 0.94123 0.91001 1.19083 0.95770 1.15482 1.02922 1.19134 0.84637 0.74518 0.79515 1.90839 1.17670 1.59460 1.76607 1.84509 1.46650 1.62738 1.37416 1.24576 0.92795 0.96311 0.94279 1.77192 1.10453 1.15033 1.11055 1.49633 1.04009 1.35916 1.21121 1.19359 0.98481 0.89065 0.77791 1.21120 1.50807 0.93743 0.90683 0.93939 1.25428 0.94202 0.96344 1.00925 1.69957 1.49606 1.11234 1.24530 0.85692 0.78586 0.79024 0.78938 1.20073 1.19083 1.20547 0.92163 0.92464 0.91646 0.91838 0.92256 0.92263 0.94798 0.89203 0.90657 0.84080 0.91538 0.72645 0.70683 0.74907 0.94302 0.93864 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.19 71.99 0.66 -1.43 16 2 C -0.10 -1.90 2.92 -10.79 -0.03 -1.94 16 3 C -0.15 -3.46 9.01 71.98 0.65 -2.81 16 4 C -0.07 -1.47 4.96 30.60 0.15 -1.31 16 5 C -0.12 -3.32 5.03 -10.79 -0.05 -3.38 16 6 H 0.08 3.07 5.91 -2.39 -0.01 3.05 16 7 C -0.14 -3.98 9.88 30.62 0.30 -3.67 16 8 C -0.18 -5.26 5.91 -11.51 -0.07 -5.32 16 9 H 0.16 3.35 8.14 -2.39 -0.02 3.33 16 10 C 0.54 21.52 7.47 87.66 0.65 22.17 16 11 O -0.54 -27.18 14.54 -3.02 -0.04 -27.23 16 12 N -0.65 -23.63 4.43 -307.35 -1.36 -24.99 16 13 C 0.37 15.48 6.49 132.54 0.86 16.34 16 14 C -0.32 -11.48 6.15 -20.02 -0.12 -11.60 16 15 C 0.58 17.67 8.31 70.04 0.58 18.25 16 16 O -0.55 -18.82 17.08 19.54 0.33 -18.48 16 17 O -0.50 -10.53 13.28 -57.44 -0.76 -11.29 16 18 C 0.11 3.68 11.86 85.72 1.02 4.70 16 19 N -0.32 -13.76 12.47 -56.22 -0.70 -14.46 16 20 N -0.33 -15.39 3.58 -347.27 -1.24 -16.63 16 21 C 0.27 14.31 6.00 85.64 0.51 14.82 16 22 C -0.53 -30.42 8.17 25.60 0.21 -30.21 16 23 H 0.04 2.68 7.38 -2.91 -0.02 2.66 16 24 C 0.03 1.80 5.46 84.65 0.46 2.26 16 25 N -0.91 -51.92 13.29 21.45 0.28 -51.64 16 26 Si 0.95 46.16 29.54 68.60 2.03 48.18 16 27 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.03 0.95 6.40 -2.39 -0.02 0.94 16 37 H 0.09 1.38 7.87 -2.39 -0.02 1.36 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.14 2.87 8.03 -2.39 -0.02 2.85 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.43 12.42 8.82 -92.71 -0.82 11.61 16 42 H 0.43 4.56 9.11 -74.06 -0.67 3.89 16 43 H 0.23 5.59 8.06 -2.91 -0.02 5.57 16 44 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.04 2.30 8.02 -2.38 -0.02 2.28 16 46 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.98 395.68 3.85 -73.13 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.47 Total: 26.53 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 5.79 Total: 16.89 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -3.02 Total: -107.72 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.47 Total: -57.00 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.98 3.85 -73.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573516291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.750 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds