Wall clock time and date at job start Tue Mar 31 2020 18:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 C 1.53002 * 109.46925 * 299.99471 * 3 2 1 5 5 C 1.53000 * 109.47430 * 300.00387 * 4 3 2 6 6 C 1.53000 * 109.47383 * 59.99887 * 3 2 1 7 7 N 1.46492 * 109.47221 * 60.00455 * 6 3 2 8 8 C 1.34780 * 120.00266 * 180.02562 * 7 6 3 9 9 O 1.21581 * 119.99526 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00197 * 179.97438 * 8 7 6 11 11 C 1.39460 * 120.00050 * 185.06517 * 10 8 7 12 12 C 1.38636 * 119.65077 * 185.36028 * 11 10 8 13 13 C 1.40820 * 118.67736 * 179.72004 * 12 11 10 14 14 C 1.41548 * 120.99689 * 180.25897 * 13 12 11 15 15 H 1.07999 * 119.99873 * 153.82208 * 14 13 12 16 16 C 1.40034 * 119.99952 * 333.81416 * 14 13 12 17 17 N 1.30743 * 119.99980 * 350.12022 * 16 14 13 18 18 Si 1.86794 * 119.99788 * 170.11244 * 16 14 13 19 19 H 1.48504 * 109.47287 * 60.00267 * 18 16 14 20 20 H 1.48504 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47504 * 300.00484 * 18 16 14 22 22 C 1.41160 * 118.00376 * 0.27918 * 13 12 11 23 23 C 1.36589 * 119.12658 * 359.97438 * 22 13 12 24 24 N 1.32066 * 121.26106 * 0.03000 * 23 22 13 25 25 C 1.50703 * 109.47243 * 180.02562 * 3 2 1 26 26 O 1.20829 * 119.99770 * 359.97438 * 25 3 2 27 27 O 1.34232 * 120.00057 * 179.97438 * 25 3 2 28 28 H 1.08995 * 109.47139 * 60.00252 * 1 2 3 29 29 H 1.08997 * 109.47664 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47141 * 300.00165 * 1 2 3 31 31 H 1.08995 * 109.47295 * 239.99461 * 2 1 3 32 32 H 1.09005 * 109.47225 * 119.99740 * 2 1 3 33 33 H 1.09009 * 109.46893 * 60.00469 * 4 3 2 34 34 H 1.09001 * 109.47469 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.46735 * 299.99880 * 5 4 3 36 36 H 1.08997 * 109.46840 * 60.00056 * 5 4 3 37 37 H 1.08995 * 109.47096 * 179.97438 * 5 4 3 38 38 H 1.08996 * 109.46956 * 299.99647 * 6 3 2 39 39 H 1.09011 * 109.47061 * 180.02562 * 6 3 2 40 40 H 0.97001 * 120.00263 * 359.97438 * 7 6 3 41 41 H 0.97002 * 120.00065 * 5.05677 * 10 8 7 42 42 H 1.08010 * 120.66043 * 359.97438 * 12 11 10 43 43 H 0.96999 * 119.99591 * 179.97438 * 17 16 14 44 44 H 1.08002 * 120.43486 * 179.97438 * 22 13 12 45 45 H 1.08010 * 119.36939 * 179.97438 * 23 22 13 46 46 H 0.96705 * 116.99669 * 180.02562 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1636 -1.2493 5 6 2.0401 1.4423 -2.4985 6 6 1.5300 2.1638 1.2492 7 7 2.0184 1.4733 2.4454 8 6 1.6924 1.9335 3.6695 9 8 0.9926 2.9215 3.7809 10 7 2.1413 1.2980 4.7700 11 6 1.7191 1.7095 6.0338 12 6 2.2693 1.1257 7.1645 13 6 1.8324 1.5610 8.4304 14 6 2.3649 1.0026 9.6171 15 1 2.3700 1.5792 10.5303 16 6 2.8851 -0.2975 9.6071 17 7 2.7072 -1.0647 8.5634 18 14 3.8331 -0.9355 11.0847 19 1 2.9575 -0.9087 12.2839 20 1 4.2751 -2.3293 10.8251 21 1 5.0209 -0.0757 11.3198 22 6 0.8471 2.5706 8.4805 23 6 0.3598 3.0825 7.3117 24 7 0.7925 2.6505 6.1411 25 6 3.5470 1.4424 -0.0006 26 8 4.1511 0.3960 -0.0006 27 8 4.2182 2.6049 -0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4400 2.1637 -1.2493 34 1 1.8930 3.1914 -1.2492 35 1 3.1301 1.4423 -2.4985 36 1 1.6766 0.4147 -2.4985 37 1 1.6764 1.9558 -3.3885 38 1 0.4401 2.1639 1.2491 39 1 1.8931 3.1916 1.2489 40 1 2.5758 0.6844 2.3565 41 1 2.7579 0.5542 4.6829 42 1 3.0211 0.3553 7.0762 43 1 3.0679 -1.9651 8.5564 44 1 0.4833 2.9334 9.4305 45 1 -0.3945 3.8549 7.3454 46 1 5.1839 2.5542 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573684732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:17 Heat of formation + Delta-G solvation = -92.878623 kcal Electronic energy + Delta-G solvation = -29191.385101 eV Core-core repulsion = 25080.903848 eV Total energy + Delta-G solvation = -4110.481253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22608 -39.70756 -38.23741 -37.45485 -36.30440 -34.37921 -33.81055 -33.67444 -31.49658 -30.49223 -29.45938 -28.18051 -25.99236 -25.31636 -23.72644 -23.14543 -21.94536 -21.52292 -20.09191 -19.35274 -18.31023 -17.99377 -17.64514 -16.92789 -16.28613 -15.91626 -15.51996 -15.35219 -15.15174 -14.71608 -14.46509 -14.17950 -14.13528 -13.77880 -13.44850 -13.32741 -12.93170 -12.83987 -12.79691 -12.56732 -12.34061 -12.17215 -12.02995 -11.86242 -11.71344 -11.45893 -11.41774 -11.19039 -10.96739 -10.89378 -10.75319 -10.56170 -10.28419 -10.13030 -9.74227 -9.59143 -9.37186 -8.85895 -7.95788 -7.71209 -7.01326 -6.72880 -4.61412 1.93414 2.69499 2.71268 2.83257 2.98824 3.01660 3.04651 3.26250 3.85174 3.87494 4.14815 4.29979 4.35738 4.58710 4.72841 4.82581 4.88803 5.00176 5.07818 5.22900 5.29043 5.41028 5.52685 5.55789 5.64337 5.71263 5.72643 5.80519 5.83786 5.92684 5.96083 6.16239 6.24505 6.53865 6.59155 6.64110 6.81556 6.96334 7.15170 7.25596 7.43999 7.50643 7.63196 7.88389 8.11794 8.37297 8.47595 8.74397 8.77486 9.16428 9.73797 10.11058 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.002612 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.285179 B =10718.186481 C =11411.378894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.107 4.107 3 C -0.060 4.060 4 C -0.113 4.113 5 C -0.158 4.158 6 C 0.151 3.849 7 N -0.758 5.758 8 C 0.695 3.305 9 O -0.532 6.532 10 N -0.668 5.668 11 C 0.354 3.646 12 C -0.243 4.243 13 C 0.143 3.857 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.795 5.795 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.283 4.283 23 C 0.119 3.881 24 N -0.553 5.553 25 C 0.490 3.510 26 O -0.513 6.513 27 O -0.509 6.509 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.390 0.610 41 H 0.404 0.596 42 H 0.132 0.868 43 H 0.281 0.719 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 0.352 -19.067 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C -0.061 4.061 4 C -0.151 4.151 5 C -0.215 4.215 6 C 0.027 3.973 7 N -0.417 5.417 8 C 0.394 3.606 9 O -0.403 6.403 10 N -0.315 5.315 11 C 0.128 3.872 12 C -0.268 4.268 13 C 0.135 3.865 14 C -0.486 4.486 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.421 5.421 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.307 4.307 23 C -0.035 4.035 24 N -0.272 5.272 25 C 0.332 3.668 26 O -0.401 6.401 27 O -0.321 6.321 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.224 0.776 41 H 0.238 0.762 42 H 0.150 0.850 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.140 0.860 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 0.221 1.161 -19.880 19.915 hybrid contribution 2.113 -1.677 1.368 3.025 sum 2.335 -0.516 -18.512 18.666 Atomic orbital electron populations 1.21912 0.94333 1.02528 1.02650 1.21512 0.96700 0.92466 1.03753 1.20962 0.87154 0.99695 0.98305 1.21602 1.02376 0.99710 0.91387 1.21883 1.00986 1.01218 0.97390 1.21175 1.00157 0.95674 0.80316 1.45257 1.58181 1.33651 1.04618 1.16002 0.81154 0.83541 0.79885 1.91009 1.39456 1.25145 1.84653 1.42555 1.49057 1.36156 1.03758 1.17958 0.93386 0.93356 0.82486 1.21625 1.07048 1.07724 0.90439 1.17574 0.87723 0.88659 0.92589 1.19547 1.34369 0.98414 0.96232 0.90105 1.25947 0.94113 0.96732 0.97500 1.69738 1.35028 1.08063 1.29301 0.86260 0.80389 0.78041 0.81398 1.18909 1.20292 1.18812 1.21685 1.04455 1.06745 0.97765 1.21467 0.97260 0.97198 0.87565 1.67169 1.16175 1.16178 1.27654 1.23304 0.91369 0.81028 0.71075 1.90730 1.70427 1.33237 1.45688 1.84545 1.26611 1.35726 1.85192 0.92085 0.92023 0.91625 0.90459 0.90886 0.89387 0.90083 0.93123 0.91763 0.91775 0.89716 0.90387 0.77578 0.76163 0.84999 0.90794 0.88027 0.86020 0.73178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.21 37.16 0.34 -0.93 16 2 C -0.11 -0.96 3.75 -26.73 -0.10 -1.06 16 3 C -0.06 -0.55 0.28 -155.66 -0.04 -0.59 16 4 C -0.11 -0.80 4.58 -26.73 -0.12 -0.92 16 5 C -0.16 -1.03 9.31 37.16 0.35 -0.68 16 6 C 0.15 1.78 4.15 -4.05 -0.02 1.77 16 7 N -0.76 -10.67 5.01 -65.23 -0.33 -11.00 16 8 C 0.69 13.51 8.51 -86.92 -0.74 12.77 16 9 O -0.53 -12.51 14.64 5.29 0.08 -12.43 16 10 N -0.67 -13.49 5.40 -15.86 -0.09 -13.58 16 11 C 0.35 8.74 7.41 -154.68 -1.15 7.59 16 12 C -0.24 -6.22 8.62 -38.46 -0.33 -6.55 16 13 C 0.14 3.79 5.60 -106.55 -0.60 3.19 16 14 C -0.45 -11.73 9.14 -37.65 -0.34 -12.07 16 15 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 16 C 0.08 1.82 5.31 -17.34 -0.09 1.73 16 17 N -0.80 -19.67 10.70 55.55 0.59 -19.08 16 18 Si 0.91 18.09 29.57 -169.99 -5.03 13.06 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.28 -7.00 9.85 -39.07 -0.38 -7.38 16 23 C 0.12 2.89 11.10 -18.05 -0.20 2.69 16 24 N -0.55 -14.34 7.89 -12.76 -0.10 -14.44 16 25 C 0.49 5.09 4.92 36.01 0.18 5.27 16 26 O -0.51 -6.52 16.74 -18.75 -0.31 -6.83 16 27 O -0.51 -4.49 13.23 -39.26 -0.52 -5.01 16 28 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 6.43 -51.92 -0.33 0.30 16 31 H 0.08 0.66 6.39 -51.93 -0.33 0.33 16 32 H 0.07 0.74 6.82 -51.93 -0.35 0.39 16 33 H 0.09 0.53 6.43 -51.92 -0.33 0.19 16 34 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.05 0.38 7.22 -51.93 -0.37 0.00 16 36 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 1.01 6.43 -51.93 -0.33 0.67 16 39 H 0.08 0.99 8.12 -51.92 -0.42 0.57 16 40 H 0.39 4.87 6.91 -40.82 -0.28 4.59 16 41 H 0.40 6.86 8.72 -40.82 -0.36 6.51 16 42 H 0.13 3.37 6.11 -52.48 -0.32 3.05 16 43 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 44 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 45 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 46 H 0.41 2.06 9.10 45.56 0.41 2.48 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -33.72 374.43 -8.67 -42.39 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -5.35 Total: 16.44 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -3.25 Total: 4.84 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.08 Total: -58.09 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.76 Total: -24.27 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.72 -8.67 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573684732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.491 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds