Wall clock time and date at job start Tue Mar 31 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 C 1.53002 * 109.46925 * 299.99471 * 3 2 1 5 5 C 1.53000 * 109.47430 * 300.00387 * 4 3 2 6 6 C 1.53000 * 109.47383 * 59.99887 * 3 2 1 7 7 N 1.46492 * 109.47221 * 60.00455 * 6 3 2 8 8 C 1.34780 * 120.00266 * 180.02562 * 7 6 3 9 9 O 1.21581 * 119.99526 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00197 * 179.97438 * 8 7 6 11 11 C 1.39460 * 120.00050 * 185.06517 * 10 8 7 12 12 C 1.38636 * 119.65077 * 185.36028 * 11 10 8 13 13 C 1.40820 * 118.67736 * 179.72004 * 12 11 10 14 14 C 1.41548 * 120.99689 * 180.25897 * 13 12 11 15 15 H 1.07999 * 119.99873 * 153.82208 * 14 13 12 16 16 C 1.40034 * 119.99952 * 333.81416 * 14 13 12 17 17 N 1.30743 * 119.99980 * 350.12022 * 16 14 13 18 18 Si 1.86794 * 119.99788 * 170.11244 * 16 14 13 19 19 H 1.48504 * 109.47287 * 60.00267 * 18 16 14 20 20 H 1.48504 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47504 * 300.00484 * 18 16 14 22 22 C 1.41160 * 118.00376 * 0.27918 * 13 12 11 23 23 C 1.36589 * 119.12658 * 359.97438 * 22 13 12 24 24 N 1.32066 * 121.26106 * 0.03000 * 23 22 13 25 25 C 1.50703 * 109.47243 * 180.02562 * 3 2 1 26 26 O 1.20829 * 119.99770 * 359.97438 * 25 3 2 27 27 O 1.34232 * 120.00057 * 179.97438 * 25 3 2 28 28 H 1.08995 * 109.47139 * 60.00252 * 1 2 3 29 29 H 1.08997 * 109.47664 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47141 * 300.00165 * 1 2 3 31 31 H 1.08995 * 109.47295 * 239.99461 * 2 1 3 32 32 H 1.09005 * 109.47225 * 119.99740 * 2 1 3 33 33 H 1.09009 * 109.46893 * 60.00469 * 4 3 2 34 34 H 1.09001 * 109.47469 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.46735 * 299.99880 * 5 4 3 36 36 H 1.08997 * 109.46840 * 60.00056 * 5 4 3 37 37 H 1.08995 * 109.47096 * 179.97438 * 5 4 3 38 38 H 1.08996 * 109.46956 * 299.99647 * 6 3 2 39 39 H 1.09011 * 109.47061 * 180.02562 * 6 3 2 40 40 H 0.97001 * 120.00263 * 359.97438 * 7 6 3 41 41 H 0.97002 * 120.00065 * 5.05677 * 10 8 7 42 42 H 1.08010 * 120.66043 * 359.97438 * 12 11 10 43 43 H 0.96999 * 119.99591 * 179.97438 * 17 16 14 44 44 H 1.08002 * 120.43486 * 179.97438 * 22 13 12 45 45 H 1.08010 * 119.36939 * 179.97438 * 23 22 13 46 46 H 0.96705 * 116.99669 * 180.02562 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1636 -1.2493 5 6 2.0401 1.4423 -2.4985 6 6 1.5300 2.1638 1.2492 7 7 2.0184 1.4733 2.4454 8 6 1.6924 1.9335 3.6695 9 8 0.9926 2.9215 3.7809 10 7 2.1413 1.2980 4.7700 11 6 1.7191 1.7095 6.0338 12 6 2.2693 1.1257 7.1645 13 6 1.8324 1.5610 8.4304 14 6 2.3649 1.0026 9.6171 15 1 2.3700 1.5792 10.5303 16 6 2.8851 -0.2975 9.6071 17 7 2.7072 -1.0647 8.5634 18 14 3.8331 -0.9355 11.0847 19 1 2.9575 -0.9087 12.2839 20 1 4.2751 -2.3293 10.8251 21 1 5.0209 -0.0757 11.3198 22 6 0.8471 2.5706 8.4805 23 6 0.3598 3.0825 7.3117 24 7 0.7925 2.6505 6.1411 25 6 3.5470 1.4424 -0.0006 26 8 4.1511 0.3960 -0.0006 27 8 4.2182 2.6049 -0.0013 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4400 2.1637 -1.2493 34 1 1.8930 3.1914 -1.2492 35 1 3.1301 1.4423 -2.4985 36 1 1.6766 0.4147 -2.4985 37 1 1.6764 1.9558 -3.3885 38 1 0.4401 2.1639 1.2491 39 1 1.8931 3.1916 1.2489 40 1 2.5758 0.6844 2.3565 41 1 2.7579 0.5542 4.6829 42 1 3.0211 0.3553 7.0762 43 1 3.0679 -1.9651 8.5564 44 1 0.4833 2.9334 9.4305 45 1 -0.3945 3.8549 7.3454 46 1 5.1839 2.5542 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573684732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:16 Heat of formation + Delta-G solvation = -115.141019 kcal Electronic energy + Delta-G solvation = -29192.350471 eV Core-core repulsion = 25080.903848 eV Total energy + Delta-G solvation = -4111.446623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12377 -41.26356 -39.84320 -38.47079 -37.13330 -36.14093 -35.49274 -35.04841 -32.41860 -32.13872 -30.79169 -29.51764 -27.90948 -26.27768 -24.56566 -23.89840 -23.79999 -23.11085 -21.69838 -20.22342 -19.67061 -19.41082 -18.87612 -18.01999 -17.57393 -17.06194 -16.90237 -16.64765 -16.23586 -16.09721 -16.02041 -15.70596 -15.56278 -15.00604 -14.67914 -14.52780 -14.33233 -14.25026 -14.00295 -13.64744 -13.43800 -13.15340 -12.91755 -12.86442 -12.77862 -12.67905 -12.62217 -12.42330 -12.13100 -12.08024 -11.91853 -11.68780 -11.51432 -11.45019 -11.34220 -11.29589 -11.17579 -10.16450 -9.91007 -9.62697 -8.85770 -8.57193 -6.57231 0.83685 1.02169 1.10466 1.41343 1.52577 1.54668 1.58510 2.01478 2.20340 2.25210 2.85381 3.08489 3.38545 3.52585 3.71223 3.77043 4.14134 4.17854 4.23517 4.40580 4.41713 4.52581 4.57540 4.65793 4.73496 4.76185 4.83570 4.86343 4.93804 5.02017 5.10201 5.14687 5.15787 5.22322 5.24902 5.29361 5.36664 5.50065 5.51866 5.54622 5.65549 5.76169 5.97474 6.25805 6.56467 6.79089 6.83496 6.88756 6.92877 7.56382 7.87913 8.29511 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.002612 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.285179 B =10718.186481 C =11411.378894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.051 4.051 4 C -0.111 4.111 5 C -0.155 4.155 6 C 0.150 3.850 7 N -0.736 5.736 8 C 0.694 3.306 9 O -0.573 6.573 10 N -0.663 5.663 11 C 0.352 3.648 12 C -0.260 4.260 13 C 0.114 3.886 14 C -0.483 4.483 15 H 0.084 0.916 16 C 0.036 3.964 17 N -0.817 5.817 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.295 4.295 23 C 0.114 3.886 24 N -0.577 5.577 25 C 0.491 3.509 26 O -0.539 6.539 27 O -0.510 6.510 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.417 0.583 42 H 0.127 0.873 43 H 0.291 0.709 44 H 0.117 0.883 45 H 0.150 0.850 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -0.208 -19.836 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.053 4.053 4 C -0.148 4.148 5 C -0.212 4.212 6 C 0.026 3.974 7 N -0.395 5.395 8 C 0.394 3.606 9 O -0.447 6.447 10 N -0.311 5.311 11 C 0.125 3.875 12 C -0.286 4.286 13 C 0.105 3.895 14 C -0.514 4.514 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.443 5.443 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.319 4.319 23 C -0.039 4.039 24 N -0.297 5.297 25 C 0.334 3.666 26 O -0.429 6.429 27 O -0.323 6.323 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.236 0.764 41 H 0.254 0.746 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.135 0.865 45 H 0.167 0.833 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.595 0.587 -20.712 20.729 hybrid contribution 2.018 -1.491 1.529 2.938 sum 2.613 -0.904 -19.183 19.381 Atomic orbital electron populations 1.21889 0.93530 1.02886 1.02741 1.21508 0.97308 0.92102 1.03387 1.20953 0.86555 0.99864 0.97923 1.21654 1.03278 0.99561 0.90340 1.21872 1.00239 1.01517 0.97606 1.21338 1.00387 0.95489 0.80168 1.45089 1.57237 1.33546 1.03583 1.16122 0.80685 0.83011 0.80765 1.90975 1.41330 1.26979 1.85420 1.42463 1.49208 1.36546 1.02926 1.18148 0.92785 0.92727 0.83856 1.21594 1.07753 1.08392 0.90847 1.18016 0.88507 0.89564 0.93383 1.19851 1.35660 0.99572 0.96277 0.89763 1.26826 0.94337 0.96307 1.00566 1.69783 1.34910 1.08657 1.30978 0.85134 0.78731 0.77710 0.77434 1.18403 1.19116 1.18435 1.21874 1.04508 1.06808 0.98696 1.21931 0.97421 0.97405 0.87175 1.67296 1.17015 1.16996 1.28356 1.23495 0.91810 0.80900 0.70345 1.90724 1.71021 1.34117 1.47012 1.84516 1.28151 1.34966 1.84645 0.90106 0.91608 0.93335 0.89733 0.92384 0.87886 0.89828 0.94263 0.91500 0.90200 0.89464 0.91038 0.76362 0.74616 0.85501 0.89846 0.86519 0.83305 0.71317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.21 71.98 0.66 -1.58 16 2 C -0.11 -1.75 3.75 30.59 0.11 -1.64 16 3 C -0.05 -0.87 0.28 -52.93 -0.02 -0.89 16 4 C -0.11 -1.33 4.58 30.60 0.14 -1.19 16 5 C -0.16 -1.67 9.31 71.98 0.67 -1.00 16 6 C 0.15 3.41 4.15 86.38 0.36 3.77 16 7 N -0.74 -20.47 5.01 -478.55 -2.40 -22.86 16 8 C 0.69 27.14 8.51 179.05 1.52 28.67 16 9 O -0.57 -27.22 14.64 -3.97 -0.06 -27.28 16 10 N -0.66 -27.10 5.40 -322.37 -1.74 -28.84 16 11 C 0.35 17.69 7.41 132.76 0.98 18.68 16 12 C -0.26 -13.64 8.62 23.00 0.20 -13.44 16 13 C 0.11 6.14 5.60 -21.11 -0.12 6.03 16 14 C -0.48 -25.16 9.14 23.52 0.21 -24.95 16 15 H 0.08 4.18 7.87 -2.91 -0.02 4.15 16 16 C 0.04 1.72 5.31 85.29 0.45 2.18 16 17 N -0.82 -40.42 10.70 21.84 0.23 -40.18 16 18 Si 0.99 36.31 29.57 68.60 2.03 38.34 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 21 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 22 C -0.30 -14.78 9.85 22.60 0.22 -14.56 16 23 C 0.11 5.58 11.10 84.27 0.94 6.51 16 24 N -0.58 -30.31 7.89 -194.27 -1.53 -31.85 16 25 C 0.49 9.67 4.92 71.24 0.35 10.02 16 26 O -0.54 -13.24 16.74 21.96 0.37 -12.88 16 27 O -0.51 -8.33 13.23 -51.44 -0.68 -9.02 16 28 H 0.08 0.85 6.43 -2.39 -0.02 0.83 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.88 6.43 -2.38 -0.02 0.87 16 31 H 0.08 1.31 6.39 -2.39 -0.02 1.30 16 32 H 0.06 1.14 6.82 -2.38 -0.02 1.12 16 33 H 0.10 0.96 6.43 -2.38 -0.02 0.94 16 34 H 0.08 1.00 8.11 -2.39 -0.02 0.98 16 35 H 0.04 0.52 7.22 -2.39 -0.02 0.50 16 36 H 0.07 0.69 6.43 -2.39 -0.02 0.68 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 2.01 6.43 -2.39 -0.02 1.99 16 39 H 0.07 1.77 8.12 -2.38 -0.02 1.75 16 40 H 0.40 9.79 6.91 -92.71 -0.64 9.15 16 41 H 0.42 14.30 8.72 -92.71 -0.81 13.49 16 42 H 0.13 6.65 6.11 -2.91 -0.02 6.63 16 43 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 44 H 0.12 5.31 8.06 -2.91 -0.02 5.28 16 45 H 0.15 6.25 8.06 -2.91 -0.02 6.23 16 46 H 0.43 3.74 9.10 -74.05 -0.67 3.07 16 Total: -1.00 -72.96 374.43 1.86 -71.10 By element: Atomic # 1 Polarization: 47.93 SS G_CDS: -1.06 Total: 46.87 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.70 Total: 16.59 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -5.44 Total: -123.73 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.37 Total: -49.17 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -72.96 1.86 -71.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573684732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.038 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds