Wall clock time and date at job start Tue Mar 31 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 C 1.53003 * 109.46851 * 240.00226 * 2 1 3 5 5 C 1.53000 * 109.47588 * 120.00207 * 2 1 3 6 6 H 1.08999 * 109.47071 * 300.00186 * 5 2 1 7 7 C 1.53006 * 109.46723 * 59.99896 * 5 2 1 8 8 C 1.50700 * 109.46750 * 184.99961 * 7 5 2 9 9 O 1.20827 * 119.99903 * 0.02562 * 8 7 5 10 10 O 1.34228 * 120.00135 * 180.02562 * 8 7 5 11 11 N 1.46502 * 109.47016 * 179.97438 * 5 2 1 12 12 C 1.34777 * 119.99735 * 85.00239 * 11 5 2 13 13 O 1.21577 * 119.99910 * 0.02562 * 12 11 5 14 14 N 1.34780 * 119.99710 * 179.97438 * 12 11 5 15 15 C 1.39459 * 119.99745 * 175.14996 * 14 12 11 16 16 C 1.38643 * 119.64554 * 185.22832 * 15 14 12 17 17 C 1.40824 * 118.67262 * 179.97438 * 16 15 14 18 18 C 1.41539 * 120.99672 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00276 * 149.49635 * 18 17 16 20 20 C 1.40035 * 120.00254 * 329.49501 * 18 17 16 21 21 N 1.30732 * 120.00437 * 167.68610 * 20 18 17 22 22 Si 1.86799 * 119.99635 * 347.68254 * 20 18 17 23 23 H 1.48497 * 109.47493 * 92.44436 * 22 20 18 24 24 H 1.48501 * 109.47254 * 212.44411 * 22 20 18 25 25 H 1.48508 * 109.47362 * 332.44452 * 22 20 18 26 26 C 1.41156 * 118.00498 * 0.02562 * 17 16 15 27 27 C 1.36596 * 119.13223 * 359.97438 * 26 17 16 28 28 N 1.32073 * 121.25362 * 359.75235 * 27 26 17 29 29 H 1.09004 * 109.46763 * 299.99222 * 1 2 3 30 30 H 1.08991 * 109.47704 * 59.99629 * 1 2 3 31 31 H 1.09007 * 109.47007 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47264 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47081 * 300.00095 * 3 2 1 34 34 H 1.09003 * 109.47405 * 60.00395 * 3 2 1 35 35 H 1.08996 * 109.47113 * 299.99901 * 4 2 1 36 36 H 1.09001 * 109.46912 * 59.99533 * 4 2 1 37 37 H 1.08998 * 109.47167 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.46754 * 65.00338 * 7 5 2 39 39 H 1.08999 * 109.47014 * 304.99814 * 7 5 2 40 40 H 0.96698 * 117.00188 * 180.02562 * 10 8 7 41 41 H 0.96994 * 120.00025 * 264.99596 * 11 5 2 42 42 H 0.97000 * 119.99923 * 355.15025 * 14 12 11 43 43 H 1.07999 * 120.66710 * 359.97438 * 16 15 14 44 44 H 0.97010 * 120.00420 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.43744 * 179.97438 * 26 17 16 46 46 H 1.07995 * 119.37410 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6768 -0.2075 2.1392 7 6 1.5300 -2.1638 1.2491 8 6 1.9288 -2.8376 2.5367 9 8 2.5562 -2.2266 3.3692 10 8 1.5872 -4.1165 2.7588 11 7 3.5051 -0.7217 1.2487 12 6 4.1794 0.3360 1.7418 13 8 3.5719 1.2902 2.1873 14 7 5.5272 0.3353 1.7418 15 6 6.2250 1.4690 2.1576 16 6 7.6071 1.5004 2.0525 17 6 8.2909 2.6557 2.4779 18 6 9.7012 2.7405 2.3933 19 1 10.1762 3.6978 2.2374 20 6 10.4807 1.5832 2.5119 21 7 11.7494 1.6146 2.1980 22 14 9.7076 -0.0053 3.1187 23 1 9.2381 -0.8026 1.9573 24 1 10.7148 -0.7865 3.8806 25 1 8.5553 0.3102 4.0008 26 6 7.5277 3.7260 2.9922 27 6 6.1689 3.6030 3.0569 28 7 5.5596 2.5064 2.6438 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6765 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2496 38 1 1.9647 -2.7028 0.4072 39 1 0.4437 -2.1651 1.1596 40 1 1.8650 -4.5056 3.5994 41 1 3.9897 -1.4832 0.8937 42 1 6.0118 -0.4536 1.4527 43 1 8.1485 0.6559 1.6524 44 1 12.2895 0.8129 2.2805 45 1 8.0118 4.6304 3.3301 46 1 5.5812 4.4193 3.4501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589703050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:06 Heat of formation + Delta-G solvation = -110.139060 kcal Electronic energy + Delta-G solvation = -29896.549618 eV Core-core repulsion = 25785.319896 eV Total energy + Delta-G solvation = -4111.229722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95993 -41.14322 -40.20708 -38.62629 -37.02473 -36.06812 -35.50604 -34.58117 -33.19174 -32.00792 -30.41321 -28.11753 -27.97527 -27.81994 -25.98551 -24.18736 -23.47290 -22.17543 -21.72703 -19.99930 -19.61350 -19.43733 -18.89197 -17.95309 -17.64748 -17.42211 -17.01950 -16.62713 -16.46167 -16.17396 -15.96699 -15.29895 -15.12841 -14.96338 -14.84673 -14.75065 -14.54846 -14.30370 -13.89454 -13.67119 -13.46152 -13.05354 -12.79448 -12.78216 -12.66681 -12.61876 -12.58875 -12.49670 -12.23592 -12.10492 -11.84329 -11.68769 -11.57015 -11.44816 -11.41630 -11.24576 -11.06889 -10.12882 -9.91192 -9.65608 -8.98092 -8.93577 -6.73670 0.62007 0.76807 1.20702 1.27924 1.37062 1.45371 1.59973 2.07703 2.12986 2.31965 2.71618 3.12795 3.50298 3.54194 3.82623 3.99597 4.00845 4.16634 4.23650 4.42525 4.44622 4.58678 4.58849 4.64164 4.67896 4.76542 4.80092 4.85170 4.93179 5.00846 5.11837 5.12644 5.14175 5.24214 5.29940 5.38191 5.48212 5.52107 5.58113 5.66597 5.68329 5.70090 5.86579 6.11321 6.29405 6.52604 6.68461 6.96016 7.04063 7.59826 7.82697 8.10293 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.003444 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.957114 B = 8128.548634 C = 9107.464365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.123 4.123 4 C -0.141 4.141 5 C 0.187 3.813 6 H 0.061 0.939 7 C -0.119 4.119 8 C 0.474 3.526 9 O -0.549 6.549 10 O -0.513 6.513 11 N -0.720 5.720 12 C 0.696 3.304 13 O -0.561 6.561 14 N -0.669 5.669 15 C 0.387 3.613 16 C -0.330 4.330 17 C 0.116 3.884 18 C -0.469 4.469 19 H 0.067 0.933 20 C 0.054 3.946 21 N -0.837 5.837 22 Si 0.968 3.032 23 H -0.245 1.245 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.283 4.283 27 C 0.129 3.871 28 N -0.567 5.567 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.424 0.576 41 H 0.403 0.597 42 H 0.417 0.583 43 H 0.116 0.884 44 H 0.298 0.702 45 H 0.121 0.879 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.390 -15.776 -6.800 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.181 4.181 4 C -0.198 4.198 5 C 0.081 3.919 6 H 0.080 0.920 7 C -0.156 4.156 8 C 0.318 3.682 9 O -0.439 6.439 10 O -0.326 6.326 11 N -0.376 5.376 12 C 0.396 3.604 13 O -0.434 6.434 14 N -0.318 5.318 15 C 0.157 3.843 16 C -0.355 4.355 17 C 0.107 3.893 18 C -0.500 4.500 19 H 0.086 0.914 20 C -0.163 4.163 21 N -0.463 5.463 22 Si 0.792 3.208 23 H -0.170 1.170 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.307 4.307 27 C -0.023 4.023 28 N -0.287 5.287 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.286 0.714 41 H 0.239 0.761 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.139 0.861 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.627 -14.720 -6.545 27.776 hybrid contribution 2.250 -0.770 0.785 2.505 sum -20.377 -15.490 -5.761 26.236 Atomic orbital electron populations 1.21953 0.92052 1.03610 1.02291 1.20931 0.97061 0.94477 0.94857 1.21758 0.99714 0.96439 1.00165 1.21922 1.00790 1.01308 0.95775 1.20670 0.77957 0.94753 0.98481 0.92050 1.21954 1.06943 0.93238 0.93441 1.23880 0.75126 0.79899 0.89321 1.90857 1.38944 1.65986 1.48159 1.84479 1.74504 1.27308 1.46326 1.44901 1.06925 1.19407 1.66403 1.16040 0.81071 0.84014 0.79245 1.90990 1.66920 1.35367 1.50110 1.42583 1.05800 1.15319 1.68143 1.17958 0.87268 0.86968 0.92123 1.21274 0.92287 1.03191 1.18774 1.17876 0.93514 0.91185 0.86679 1.19484 0.90149 0.95889 1.44438 0.91447 1.26777 0.94936 1.03084 0.91510 1.69621 1.08368 1.33034 1.35269 0.85476 0.78183 0.77182 0.79993 1.16967 1.20381 1.19162 1.21867 0.95158 1.02103 1.11525 1.22091 0.91898 0.94246 0.94041 1.67475 1.39505 1.01480 1.20199 0.93425 0.91519 0.89291 0.95431 0.92916 0.94639 0.89332 0.92178 0.93593 0.83578 0.82756 0.71448 0.76105 0.74640 0.86620 0.89120 0.86143 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.13 71.98 0.59 -1.12 16 2 C -0.07 -1.25 0.62 -52.18 -0.03 -1.28 16 3 C -0.12 -3.36 7.00 71.98 0.50 -2.85 16 4 C -0.14 -1.74 7.96 71.98 0.57 -1.17 16 5 C 0.19 3.73 1.09 44.99 0.05 3.78 16 6 H 0.06 1.75 7.39 -2.39 -0.02 1.73 16 7 C -0.12 -1.24 4.63 29.85 0.14 -1.10 16 8 C 0.47 7.85 8.19 71.24 0.58 8.43 16 9 O -0.55 -15.28 16.11 21.96 0.35 -14.92 16 10 O -0.51 -5.51 13.42 -51.40 -0.69 -6.20 16 11 N -0.72 -17.56 3.35 -457.81 -1.53 -19.09 16 12 C 0.70 25.40 6.88 179.05 1.23 26.64 16 13 O -0.56 -25.18 11.72 -3.96 -0.05 -25.22 16 14 N -0.67 -25.34 5.40 -322.37 -1.74 -27.08 16 15 C 0.39 18.18 7.42 132.76 0.99 19.16 16 16 C -0.33 -15.98 6.95 23.00 0.16 -15.82 16 17 C 0.12 6.05 5.17 -21.12 -0.11 5.94 16 18 C -0.47 -25.95 9.67 23.52 0.23 -25.73 16 19 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 20 C 0.05 2.81 5.48 85.29 0.47 3.28 16 21 N -0.84 -44.33 13.92 21.84 0.30 -44.03 16 22 Si 0.97 42.01 24.42 68.60 1.68 43.69 16 23 H -0.24 -9.48 6.67 99.48 0.66 -8.81 16 24 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -12.55 6.66 99.48 0.66 -11.88 16 26 C -0.28 -13.69 9.85 22.60 0.22 -13.47 16 27 C 0.13 5.99 11.10 84.27 0.94 6.93 16 28 N -0.57 -28.16 7.85 -194.27 -1.53 -29.69 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.49 6.32 -2.38 -0.02 0.48 16 32 H 0.03 0.92 5.78 -2.39 -0.01 0.90 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.03 1.15 7.53 -2.39 -0.02 1.14 16 35 H 0.09 0.50 6.54 -2.39 -0.02 0.49 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.04 0.70 7.60 -2.39 -0.02 0.68 16 38 H 0.15 0.62 6.71 -2.39 -0.02 0.60 16 39 H 0.15 0.73 6.17 -2.39 -0.01 0.71 16 40 H 0.42 2.08 9.10 -74.06 -0.67 1.41 16 41 H 0.40 7.21 8.62 -92.71 -0.80 6.41 16 42 H 0.42 12.57 8.71 -92.71 -0.81 11.77 16 43 H 0.12 5.28 4.43 -2.91 -0.01 5.26 16 44 H 0.30 14.06 8.29 -92.70 -0.77 13.29 16 45 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 46 H 0.16 6.17 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -80.50 366.71 2.01 -78.49 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -1.31 Total: 32.44 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.52 Total: 11.62 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.49 Total: -119.89 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.38 Total: -46.35 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.68 Total: 43.69 kcal Total: -80.50 2.01 -78.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589703050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.650 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds