Wall clock time and date at job start Tue Mar 31 2020 18:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53006 * 109.46909 * 185.00286 * 3 2 1 5 5 C 1.53002 * 109.46909 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47276 * 65.00195 * 3 2 1 7 7 C 1.50693 * 109.47427 * 59.99687 * 6 3 2 8 8 O 1.20828 * 120.00042 * 0.02562 * 7 6 3 9 9 O 1.34227 * 120.00443 * 179.97438 * 7 6 3 10 10 N 1.46493 * 109.46919 * 304.99766 * 3 2 1 11 11 C 1.34777 * 120.00657 * 300.00073 * 10 3 2 12 12 O 1.21583 * 119.99443 * 0.02562 * 11 10 3 13 13 N 1.34777 * 120.00506 * 180.27476 * 11 10 3 14 14 C 1.39460 * 120.00060 * 175.17765 * 13 11 10 15 15 C 1.38639 * 119.64954 * 186.28818 * 14 13 11 16 16 C 1.40821 * 118.67929 * 179.97438 * 15 14 13 17 17 C 1.41541 * 121.00269 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99731 * 201.15287 * 17 16 15 19 19 C 1.40030 * 119.99880 * 21.14210 * 17 16 15 20 20 N 1.30743 * 119.99956 * 12.11135 * 19 17 16 21 21 Si 1.86801 * 120.00104 * 192.10739 * 19 17 16 22 22 H 1.48490 * 109.47249 * 90.00250 * 21 19 17 23 23 H 1.48505 * 109.46978 * 210.00456 * 21 19 17 24 24 H 1.48498 * 109.46840 * 329.99990 * 21 19 17 25 25 C 1.41167 * 118.00046 * 359.97438 * 16 15 14 26 26 C 1.36591 * 119.12813 * 0.02562 * 25 16 15 27 27 N 1.32062 * 121.26005 * 359.73808 * 26 25 16 28 28 H 1.08997 * 109.46942 * 59.99719 * 1 2 3 29 29 H 1.08999 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47016 * 300.00274 * 1 2 3 31 31 H 1.08997 * 109.47016 * 239.99726 * 2 1 3 32 32 H 1.09004 * 109.47369 * 119.99762 * 2 1 3 33 33 H 1.09004 * 109.46576 * 299.99422 * 4 3 2 34 34 H 1.08992 * 109.47257 * 59.99988 * 4 3 2 35 35 H 1.09004 * 109.47111 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.46905 * 300.00011 * 5 4 3 37 37 H 1.09006 * 109.47152 * 59.99963 * 5 4 3 38 38 H 1.08999 * 109.47239 * 180.02562 * 6 3 2 39 39 H 1.09002 * 109.47051 * 300.00086 * 6 3 2 40 40 H 0.96702 * 117.00606 * 179.97438 * 9 7 6 41 41 H 0.97000 * 119.99966 * 120.00214 * 10 3 2 42 42 H 0.97000 * 120.00020 * 355.18674 * 13 11 10 43 43 H 1.07998 * 120.66226 * 0.02562 * 15 14 13 44 44 H 0.96996 * 120.00359 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.43442 * 179.97438 * 25 16 15 46 46 H 1.07999 * 119.36721 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1258 5 6 4.0750 2.8868 -0.1252 6 6 1.6354 2.1266 1.3073 7 6 2.2362 1.3813 2.4712 8 8 2.9185 0.4036 2.2751 9 8 2.0142 1.8042 3.7256 10 7 1.4559 2.1669 -1.1314 11 6 1.6792 1.7426 -2.3910 12 8 2.3652 0.7583 -2.5883 13 7 1.1464 2.4124 -3.4322 14 6 1.4587 2.0344 -4.7378 15 6 1.0135 2.8058 -5.8002 16 6 1.3411 2.4056 -7.1100 17 6 0.9118 3.1562 -8.2306 18 1 0.8610 2.6917 -9.2042 19 6 0.5529 4.5009 -8.0767 20 7 0.8337 5.1294 -6.9651 21 14 -0.3271 5.3969 -9.4595 22 1 -1.7948 5.2439 -9.2933 23 1 0.0280 6.8384 -9.4201 24 1 0.0861 4.8208 -10.7643 25 6 2.1106 1.2332 -7.2718 26 6 2.5040 0.5379 -6.1639 27 7 2.1825 0.9449 -4.9494 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.9053 0.7161 34 1 3.8532 0.9570 -1.0571 35 1 5.1614 2.8880 -0.2143 36 1 3.6403 3.4262 -0.9667 37 1 3.7867 3.3737 0.8065 38 1 1.9983 3.1543 1.3071 39 1 0.5490 2.1252 1.3969 40 1 2.4202 1.2936 4.4394 41 1 0.9084 2.9520 -0.9741 42 1 0.5458 3.1573 -3.2735 43 1 0.4278 3.6965 -5.6268 44 1 0.5855 6.0609 -6.8586 45 1 2.3839 0.8900 -8.2587 46 1 3.0931 -0.3594 -6.2832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595051048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:16 Heat of formation + Delta-G solvation = -78.379378 kcal Electronic energy + Delta-G solvation = -29762.280069 eV Core-core repulsion = 25652.427550 eV Total energy + Delta-G solvation = -4109.852519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17373 -39.87732 -38.42632 -37.04696 -36.02193 -34.22417 -33.71076 -32.10853 -31.99519 -30.43763 -29.80481 -28.36686 -26.03269 -25.82658 -23.00715 -21.98650 -21.84420 -21.71297 -20.17287 -19.22110 -18.38939 -18.03628 -17.52428 -16.51439 -16.47835 -16.01217 -15.47716 -15.24422 -14.81564 -14.57344 -14.22801 -14.12665 -13.77329 -13.50305 -13.40155 -13.21536 -12.87634 -12.72523 -12.61849 -12.59172 -12.29561 -12.17447 -11.95673 -11.43218 -11.42559 -11.38226 -11.18630 -10.89332 -10.75849 -10.66895 -10.38932 -10.31726 -10.22974 -10.04663 -9.70064 -9.37057 -9.24062 -8.70258 -7.95710 -7.67996 -6.96316 -6.73776 -4.61790 1.92327 2.51118 2.72756 2.83035 3.00901 3.04445 3.27598 3.29951 3.84167 3.92355 4.29868 4.62009 4.66675 4.72830 4.78004 5.11123 5.18342 5.27604 5.45889 5.47777 5.57082 5.62294 5.74910 5.85981 5.98305 5.99311 6.08369 6.12903 6.28225 6.35368 6.38053 6.56427 6.59372 6.61611 6.73596 6.84041 6.88617 6.96382 7.19391 7.32863 7.48563 7.53518 7.63157 7.90549 8.14426 8.44829 8.50645 8.76073 8.77855 9.26496 9.78191 10.07108 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002681 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.883675 B =10439.932029 C =10909.549107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.220 3.780 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.125 4.125 7 C 0.485 3.515 8 O -0.496 6.496 9 O -0.519 6.519 10 N -0.746 5.746 11 C 0.697 3.303 12 O -0.523 6.523 13 N -0.669 5.669 14 C 0.355 3.645 15 C -0.251 4.251 16 C 0.139 3.861 17 C -0.449 4.449 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.915 3.085 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.286 4.286 26 C 0.119 3.881 27 N -0.551 5.551 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.411 0.589 41 H 0.388 0.612 42 H 0.402 0.598 43 H 0.139 0.861 44 H 0.280 0.720 45 H 0.100 0.900 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 0.355 17.832 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.134 3.866 4 C -0.189 4.189 5 C -0.205 4.205 6 C -0.163 4.163 7 C 0.327 3.673 8 O -0.384 6.384 9 O -0.331 6.331 10 N -0.404 5.404 11 C 0.397 3.603 12 O -0.393 6.393 13 N -0.317 5.317 14 C 0.129 3.871 15 C -0.277 4.277 16 C 0.131 3.869 17 C -0.481 4.481 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.417 5.417 21 Si 0.739 3.261 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.310 4.310 26 C -0.035 4.035 27 N -0.270 5.270 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.269 0.731 41 H 0.221 0.779 42 H 0.236 0.764 43 H 0.156 0.844 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.949 -0.889 18.156 18.202 hybrid contribution -1.010 1.606 -0.715 2.027 sum -1.959 0.717 17.441 17.565 Atomic orbital electron populations 1.21743 0.96346 1.01322 1.00962 1.22231 0.95471 0.95748 1.05305 1.19697 0.93676 0.91404 0.81873 1.22246 0.93504 0.97593 1.05562 1.21770 1.00895 0.97070 1.00796 1.21628 1.03288 1.01143 0.90204 1.23020 0.77841 0.82815 0.83595 1.90670 1.36301 1.26337 1.85088 1.84522 1.72220 1.59184 1.17206 1.45204 1.57472 1.33271 1.04430 1.15941 0.81135 0.83507 0.79738 1.90957 1.40208 1.25251 1.82931 1.42577 1.49848 1.35492 1.03742 1.17981 0.95063 0.91908 0.82160 1.21777 1.10471 1.04248 0.91195 1.17581 0.86975 0.89900 0.92447 1.19616 1.38231 0.94656 0.95572 0.90099 1.25972 0.93551 0.97967 0.96866 1.69739 1.34999 1.11278 1.25684 0.86206 0.80116 0.78333 0.81460 1.19243 1.20224 1.18529 1.21643 1.08910 1.02280 0.98143 1.21454 0.96921 0.97527 0.87578 1.67206 1.19778 1.15806 1.24247 0.92556 0.93040 0.93863 0.88930 0.89642 0.89528 0.88801 0.92969 0.92507 0.93868 0.86866 0.86992 0.73053 0.77851 0.76373 0.84398 0.90874 0.88199 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.46 37.16 0.35 -1.40 16 2 C -0.15 -2.04 4.44 -26.73 -0.12 -2.16 16 3 C 0.22 2.67 0.19 -131.82 -0.02 2.64 16 4 C -0.15 -2.11 4.48 -26.73 -0.12 -2.23 16 5 C -0.15 -1.83 9.40 37.16 0.35 -1.48 16 6 C -0.12 -1.06 4.39 -27.89 -0.12 -1.18 16 7 C 0.49 4.44 7.71 36.00 0.28 4.72 16 8 O -0.50 -5.95 12.12 -18.75 -0.23 -6.18 16 9 O -0.52 -3.42 13.42 -39.25 -0.53 -3.94 16 10 N -0.75 -9.53 3.41 -52.42 -0.18 -9.71 16 11 C 0.70 12.72 7.73 -86.92 -0.67 12.05 16 12 O -0.52 -11.64 10.86 5.29 0.06 -11.58 16 13 N -0.67 -12.81 5.39 -15.86 -0.09 -12.90 16 14 C 0.35 8.53 7.42 -154.68 -1.15 7.39 16 15 C -0.25 -6.32 8.67 -38.46 -0.33 -6.66 16 16 C 0.14 3.66 5.65 -106.55 -0.60 3.06 16 17 C -0.45 -11.50 9.15 -37.65 -0.34 -11.85 16 18 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 19 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 20 N -0.79 -19.15 10.50 55.55 0.58 -18.57 16 21 Si 0.91 17.80 29.58 -169.99 -5.03 12.77 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 C -0.29 -7.05 9.85 -39.07 -0.38 -7.44 16 26 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 27 N -0.55 -14.06 7.86 -12.76 -0.10 -14.16 16 28 H 0.06 0.74 7.29 -51.93 -0.38 0.37 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.41 6.56 -51.93 -0.34 0.07 16 31 H 0.09 1.62 6.32 -51.93 -0.33 1.29 16 32 H 0.09 1.16 5.42 -51.93 -0.28 0.88 16 33 H 0.09 1.21 5.52 -51.93 -0.29 0.93 16 34 H 0.09 1.68 6.16 -51.93 -0.32 1.36 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.77 7.60 -51.93 -0.39 0.38 16 37 H 0.04 0.43 6.43 -51.93 -0.33 0.09 16 38 H 0.11 0.79 6.43 -51.93 -0.33 0.45 16 39 H 0.11 0.76 6.57 -51.93 -0.34 0.42 16 40 H 0.41 1.08 9.10 45.56 0.41 1.50 16 41 H 0.39 3.71 8.49 -40.82 -0.35 3.37 16 42 H 0.40 6.29 8.72 -40.82 -0.36 5.93 16 43 H 0.14 3.45 5.81 -52.49 -0.30 3.14 16 44 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 45 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 46 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -32.90 364.42 -8.37 -41.27 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -5.17 Total: 17.67 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -3.18 Total: -0.16 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.22 Total: -55.34 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.70 Total: -21.70 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.90 -8.37 -41.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595051048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.107 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds