Wall clock time and date at job start Tue Mar 31 2020 18:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 C 1.53007 * 109.47229 * 299.99896 * 3 2 1 5 5 C 1.52995 * 109.47046 * 300.00221 * 4 3 2 6 6 C 1.53005 * 109.47278 * 59.99864 * 3 2 1 7 7 N 1.46496 * 109.46807 * 59.99879 * 6 3 2 8 8 C 1.34777 * 120.00099 * 179.97438 * 7 6 3 9 9 O 1.21577 * 119.99827 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00422 * 179.97438 * 8 7 6 11 11 C 1.39239 * 120.00405 * 185.80033 * 10 8 7 12 12 C 1.39693 * 119.57304 * 18.80792 * 11 10 8 13 13 C 1.38641 * 119.49495 * 180.02562 * 12 11 10 14 14 C 1.38361 * 118.67060 * 359.73341 * 13 12 11 15 15 C 1.40572 * 119.12979 * 0.53335 * 14 13 12 16 16 C 1.41328 * 119.78467 * 179.72881 * 15 14 13 17 17 H 1.08003 * 120.00133 * 6.98045 * 16 15 14 18 18 C 1.40024 * 120.00038 * 186.97700 * 16 15 14 19 19 N 1.30746 * 120.00260 * 181.93444 * 18 16 15 20 20 Si 1.86806 * 119.99911 * 1.93817 * 18 16 15 21 21 H 1.48496 * 109.47403 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.46951 * 299.99645 * 20 18 16 23 23 H 1.48492 * 109.47090 * 59.99491 * 20 18 16 24 24 N 1.31900 * 119.57825 * 198.83121 * 11 10 8 25 25 C 1.50692 * 109.47201 * 180.02562 * 3 2 1 26 26 O 1.20826 * 119.99903 * 0.02562 * 25 3 2 27 27 O 1.34227 * 120.00536 * 180.02562 * 25 3 2 28 28 H 1.09000 * 109.47325 * 300.00026 * 1 2 3 29 29 H 1.08998 * 109.47344 * 60.00060 * 1 2 3 30 30 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46729 * 239.99805 * 2 1 3 32 32 H 1.08997 * 109.46605 * 119.99848 * 2 1 3 33 33 H 1.09002 * 109.46893 * 60.00287 * 4 3 2 34 34 H 1.08997 * 109.47275 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47329 * 299.99800 * 5 4 3 36 36 H 1.09002 * 109.47149 * 59.99977 * 5 4 3 37 37 H 1.08998 * 109.46953 * 179.97438 * 5 4 3 38 38 H 1.08996 * 109.46984 * 300.00126 * 6 3 2 39 39 H 1.09002 * 109.47139 * 179.97438 * 6 3 2 40 40 H 0.97001 * 120.00437 * 359.97438 * 7 6 3 41 41 H 0.97001 * 119.99346 * 5.81122 * 10 8 7 42 42 H 1.08001 * 120.25043 * 0.02562 * 12 11 10 43 43 H 1.08001 * 120.66587 * 180.02562 * 13 12 11 44 44 H 1.08001 * 120.43474 * 180.26074 * 14 13 12 45 45 H 0.96992 * 119.99851 * 354.83157 * 19 18 16 46 46 H 0.96693 * 117.00528 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 -1.2493 5 6 2.0400 1.4425 -2.4985 6 6 1.5300 2.1638 1.2492 7 7 2.0183 1.4732 2.4454 8 6 1.6932 1.9339 3.6695 9 8 0.9942 2.9224 3.7811 10 7 2.1420 1.2983 4.7700 11 6 1.7094 1.6999 6.0311 12 6 0.5470 2.4654 6.1498 13 6 0.1180 2.8648 7.4062 14 6 0.8577 2.4849 8.5120 15 6 2.0217 1.7189 8.3264 16 6 2.7909 1.3280 9.4458 17 1 2.4269 1.5193 10.4445 18 6 4.0248 0.6927 9.2601 19 7 4.7188 0.2972 10.2951 20 14 4.6795 0.4104 7.5334 21 1 5.9945 -0.2751 7.6085 22 1 3.7232 -0.4341 6.7734 23 1 4.8412 1.7165 6.8457 24 7 2.4027 1.3529 7.0982 25 6 3.5469 1.4425 -0.0006 26 8 4.1511 0.3961 -0.0015 27 8 4.2182 2.6049 -0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4400 2.1638 -1.2493 34 1 1.8930 3.1915 -1.2491 35 1 3.1300 1.4425 -2.4985 36 1 1.6766 0.4148 -2.4985 37 1 1.6763 1.9561 -3.3884 38 1 0.4400 2.1638 1.2492 39 1 1.8937 3.1913 1.2495 40 1 2.5757 0.6843 2.3564 41 1 2.7665 0.5611 4.6834 42 1 -0.0133 2.7440 5.2695 43 1 -0.7782 3.4567 7.5199 44 1 0.5473 2.7767 9.5044 45 1 4.4163 0.5097 11.1918 46 1 5.1838 2.5543 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595071227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:19 Heat of formation + Delta-G solvation = -101.983144 kcal Electronic energy + Delta-G solvation = -29542.686301 eV Core-core repulsion = 25431.810246 eV Total energy + Delta-G solvation = -4110.876055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36644 -40.21714 -38.48834 -37.68535 -36.38953 -34.61837 -34.25595 -33.42650 -31.61327 -31.09636 -29.89350 -28.78548 -25.63185 -25.24455 -23.91680 -23.24168 -22.12383 -21.70968 -20.37266 -19.44542 -18.74195 -18.17232 -17.91977 -17.31623 -16.83776 -16.14137 -15.77414 -15.43892 -15.38648 -14.97695 -14.72512 -14.51348 -14.12318 -13.85594 -13.57913 -13.41899 -13.14834 -13.05009 -12.84513 -12.55032 -12.39560 -12.22444 -12.16858 -11.97008 -11.84465 -11.79736 -11.55962 -11.20996 -11.08998 -10.87397 -10.80365 -10.65178 -10.36348 -10.01150 -9.68144 -9.46117 -9.16024 -9.12307 -8.53453 -7.79136 -7.35284 -7.23173 -4.76133 1.84421 2.38155 2.55135 2.66576 2.70468 3.39675 3.54687 3.66474 3.96206 4.01616 4.15009 4.21191 4.33737 4.39102 4.66738 4.73118 4.78555 4.90387 4.96548 5.11421 5.18519 5.28454 5.37784 5.46320 5.50304 5.54911 5.62405 5.70385 5.73791 5.80539 5.83239 6.04288 6.09049 6.17066 6.22355 6.41213 6.54903 6.65608 6.84364 7.16993 7.31994 7.46044 7.55004 7.62583 7.76109 7.88874 8.18606 8.33545 8.63660 8.71971 9.42169 10.01558 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003114 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.062209 B = 8989.842237 C = 9948.539739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.060 4.060 4 C -0.112 4.112 5 C -0.158 4.158 6 C 0.149 3.851 7 N -0.750 5.750 8 C 0.712 3.288 9 O -0.561 6.561 10 N -0.667 5.667 11 C 0.405 3.595 12 C -0.310 4.310 13 C -0.034 4.034 14 C -0.279 4.279 15 C 0.275 3.725 16 C -0.477 4.477 17 H 0.083 0.917 18 C 0.043 3.957 19 N -0.808 5.808 20 Si 1.158 2.842 21 H -0.333 1.333 22 H -0.285 1.285 23 H -0.294 1.294 24 N -0.601 5.601 25 C 0.488 3.512 26 O -0.510 6.510 27 O -0.510 6.510 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.404 0.596 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.283 0.717 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 0.964 -24.495 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.062 4.062 4 C -0.150 4.150 5 C -0.215 4.215 6 C 0.024 3.976 7 N -0.408 5.408 8 C 0.412 3.588 9 O -0.436 6.436 10 N -0.314 5.314 11 C 0.173 3.827 12 C -0.335 4.335 13 C -0.058 4.058 14 C -0.302 4.302 15 C 0.151 3.849 16 C -0.509 4.509 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.430 5.430 20 Si 0.994 3.006 21 H -0.267 1.267 22 H -0.214 1.214 23 H -0.223 1.223 24 N -0.327 5.327 25 C 0.330 3.670 26 O -0.398 6.398 27 O -0.321 6.321 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.238 0.762 42 H 0.159 0.841 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -3.700 0.449 -25.190 25.465 hybrid contribution -0.667 0.427 1.219 1.454 sum -4.367 0.876 -23.971 24.382 Atomic orbital electron populations 1.21916 0.94288 1.02606 1.02611 1.21531 0.96713 0.92417 1.03916 1.20965 0.87314 0.99722 0.98174 1.21599 1.02350 0.99740 0.91337 1.21884 1.01067 1.01216 0.97356 1.21280 1.00332 0.95871 0.80071 1.45170 1.57641 1.33574 1.04383 1.15621 0.80596 0.82688 0.79880 1.90859 1.41505 1.26309 1.84962 1.42342 1.48483 1.36705 1.03885 1.17783 0.89788 0.92368 0.82719 1.21532 1.00813 1.12344 0.98779 1.20927 0.96966 0.95488 0.92427 1.21588 1.01052 1.09715 0.97829 1.18253 0.90380 0.87917 0.88350 1.20710 1.03341 1.33530 0.93313 0.89842 1.27756 0.93136 0.89346 1.07539 1.70642 1.39261 1.32102 1.00957 0.81768 0.71098 0.77101 0.70606 1.26711 1.21367 1.22276 1.65868 1.34514 1.33376 0.98907 1.23273 0.91335 0.81119 0.71286 1.90743 1.70378 1.33214 1.45478 1.84526 1.26777 1.35650 1.85155 0.91733 0.92001 0.91942 0.90268 0.90880 0.89364 0.90020 0.93055 0.91738 0.91711 0.89342 0.89959 0.76963 0.76151 0.84100 0.87607 0.87692 0.90592 0.72984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.21 37.16 0.34 -0.68 16 2 C -0.11 -0.82 3.75 -26.73 -0.10 -0.92 16 3 C -0.06 -0.47 0.28 -155.66 -0.04 -0.51 16 4 C -0.11 -0.66 4.58 -26.73 -0.12 -0.78 16 5 C -0.16 -0.88 9.31 37.16 0.35 -0.54 16 6 C 0.15 1.46 4.15 -4.04 -0.02 1.45 16 7 N -0.75 -9.18 5.01 -65.23 -0.33 -9.50 16 8 C 0.71 12.14 8.40 -86.92 -0.73 11.41 16 9 O -0.56 -11.14 13.14 5.30 0.07 -11.07 16 10 N -0.67 -12.70 5.42 -15.79 -0.09 -12.79 16 11 C 0.40 9.44 7.51 -155.00 -1.16 8.28 16 12 C -0.31 -7.05 8.83 -38.89 -0.34 -7.39 16 13 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 14 C -0.28 -6.74 9.83 -38.66 -0.38 -7.12 16 15 C 0.27 7.32 6.39 -85.00 -0.54 6.78 16 16 C -0.48 -13.15 9.58 -37.74 -0.36 -13.51 16 17 H 0.08 2.29 8.05 -52.48 -0.42 1.87 16 18 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16 19 N -0.81 -22.24 13.65 55.55 0.76 -21.48 16 20 Si 1.16 28.58 25.53 -169.99 -4.34 24.24 16 21 H -0.33 -8.14 7.11 56.52 0.40 -7.73 16 22 H -0.29 -6.77 6.70 56.52 0.38 -6.39 16 23 H -0.29 -7.40 7.10 56.52 0.40 -7.00 16 24 N -0.60 -15.45 4.58 -10.26 -0.05 -15.50 16 25 C 0.49 4.59 4.92 36.00 0.18 4.77 16 26 O -0.51 -6.07 16.74 -18.75 -0.31 -6.39 16 27 O -0.51 -4.06 13.23 -39.25 -0.52 -4.58 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.59 6.39 -51.93 -0.33 0.26 16 32 H 0.07 0.64 6.82 -51.93 -0.35 0.28 16 33 H 0.09 0.41 6.43 -51.93 -0.33 0.07 16 34 H 0.08 0.48 8.11 -51.93 -0.42 0.05 16 35 H 0.05 0.34 7.22 -51.93 -0.37 -0.03 16 36 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.83 6.43 -51.93 -0.33 0.50 16 39 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.40 4.33 6.91 -40.82 -0.28 4.05 16 41 H 0.40 6.87 8.84 -40.82 -0.36 6.51 16 42 H 0.14 3.13 5.33 -52.50 -0.28 2.85 16 43 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 44 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 45 H 0.28 7.44 8.72 -40.82 -0.36 7.09 16 46 H 0.41 1.83 9.10 45.56 0.41 2.24 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -33.73 368.77 -8.05 -41.78 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.37 Total: 8.56 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.44 Total: 1.17 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.30 Total: -59.27 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.76 Total: -22.04 kcal Atomic # 14 Polarization: 28.58 SS G_CDS: -4.34 Total: 24.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.73 -8.05 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595071227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.201 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds