Wall clock time and date at job start Tue Mar 31 2020 18:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 H 1.09003 * 109.46635 * 305.46258 * 3 2 1 5 5 C 1.50700 * 109.47304 * 185.46489 * 3 2 1 6 6 H 1.07995 * 119.99829 * 245.33077 * 5 3 2 7 7 C 1.37879 * 119.99847 * 65.32576 * 5 3 2 8 8 N 1.31518 * 119.99647 * 186.08895 * 7 5 3 9 9 Si 1.86797 * 120.00082 * 6.09582 * 7 5 3 10 10 H 1.48507 * 109.46891 * 269.99471 * 9 7 5 11 11 H 1.48500 * 109.47332 * 29.99623 * 9 7 5 12 12 H 1.48503 * 109.47154 * 150.00172 * 9 7 5 13 13 N 1.46503 * 109.47538 * 65.45952 * 3 2 1 14 14 C 1.34772 * 120.00198 * 275.00671 * 13 3 2 15 15 O 1.21588 * 120.00124 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00291 * 180.02562 * 14 13 3 17 17 C 1.39633 * 120.00423 * 184.79053 * 16 14 13 18 18 C 1.38937 * 119.94432 * 331.66122 * 17 16 14 19 19 C 1.37750 * 120.16473 * 179.72161 * 18 17 16 20 20 C 1.39787 * 120.04814 * 0.55131 * 19 18 17 21 21 C 1.47450 * 120.05688 * 179.74667 * 20 19 18 22 22 O 1.21517 * 120.00018 * 179.97438 * 21 20 19 23 23 O 1.34752 * 120.00134 * 359.97180 * 21 20 19 24 24 C 1.39798 * 119.88536 * 359.71782 * 20 19 18 25 25 C 1.38258 * 119.84094 * 0.02562 * 24 20 19 26 26 N 1.39952 * 120.02286 * 179.97438 * 25 24 20 27 27 C 1.46901 * 111.00008 * 300.01463 * 26 25 24 28 28 C 1.46894 * 111.00359 * 63.97428 * 26 25 24 29 29 H 1.09004 * 109.46934 * 300.00388 * 1 2 3 30 30 H 1.09003 * 109.46803 * 60.00434 * 1 2 3 31 31 H 1.09005 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47159 * 239.99541 * 2 1 3 33 33 H 1.09003 * 109.46803 * 119.99566 * 2 1 3 34 34 H 0.96995 * 120.00201 * 354.97630 * 8 7 5 35 35 H 0.97001 * 119.99396 * 95.00095 * 13 3 2 36 36 H 0.96998 * 119.99641 * 4.78137 * 16 14 13 37 37 H 1.08009 * 119.91664 * 359.97438 * 18 17 16 38 38 H 1.08004 * 119.97948 * 180.27023 * 19 18 17 39 39 H 0.96705 * 117.00406 * 179.97438 * 23 21 20 40 40 H 1.07997 * 120.08014 * 180.02562 * 24 20 19 41 41 H 1.09002 * 109.47054 * 63.95729 * 27 26 25 42 42 H 1.09000 * 109.47345 * 183.95427 * 27 26 25 43 43 H 1.08996 * 109.47027 * 303.95693 * 27 26 25 44 44 H 1.08999 * 109.47052 * 56.04297 * 28 26 25 45 45 H 1.09003 * 109.47201 * 176.04368 * 28 26 25 46 46 H 1.09004 * 109.47278 * 296.04498 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5990 1.9837 -0.8371 5 6 3.5410 1.4446 -0.1353 6 1 4.1556 1.8086 0.6747 7 6 4.1294 0.9818 -1.2932 8 7 5.4378 0.8711 -1.3669 9 14 3.0683 0.5123 -2.7570 10 1 2.7032 -0.9242 -2.6632 11 1 1.8338 1.3376 -2.7586 12 1 3.8243 0.7498 -4.0129 13 7 1.6620 2.0942 1.2564 14 6 0.4457 2.6607 1.3824 15 8 -0.3378 2.6314 0.4531 16 7 0.0981 3.2607 2.5380 17 6 -1.1955 3.7593 2.7044 18 6 -1.9223 4.1846 1.5993 19 6 -3.2010 4.6719 1.7575 20 6 -3.7672 4.7506 3.0332 21 6 -5.1338 5.2774 3.2034 22 8 -5.6252 5.3450 4.3127 23 8 -5.8379 5.6840 2.1288 24 6 -3.0357 4.3285 4.1472 25 6 -1.7546 3.8352 3.9825 26 7 -1.0187 3.4120 5.0951 27 6 -0.8292 4.5119 6.0502 28 6 -1.6580 2.2580 5.7412 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.9930 1.1829 -0.6352 35 1 2.2872 2.1178 1.9977 36 1 0.7466 3.3461 3.2543 37 1 -1.4851 4.1293 0.6132 38 1 -3.7649 4.9977 0.8959 39 1 -6.7296 6.0215 2.2901 40 1 -3.4702 4.3875 5.1342 41 1 -1.7972 4.8232 6.4428 42 1 -0.1955 4.1755 6.8708 43 1 -0.3541 5.3533 5.5458 44 1 -1.7864 1.4583 5.0118 45 1 -1.0300 1.9059 6.5596 46 1 -2.6318 2.5535 6.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609913751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:08 Heat of formation + Delta-G solvation = -78.548035 kcal Electronic energy + Delta-G solvation = -29445.671798 eV Core-core repulsion = 25335.811966 eV Total energy + Delta-G solvation = -4109.859832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01515 -40.16569 -39.13574 -36.72011 -36.29190 -35.69765 -34.40571 -32.55291 -31.60037 -30.27880 -29.69693 -27.85271 -27.21600 -25.12648 -24.36891 -22.44421 -22.12509 -21.25380 -20.69115 -19.82955 -18.62828 -18.15436 -17.94298 -17.32047 -16.96270 -15.86544 -15.72311 -15.64130 -15.29938 -15.27156 -14.98116 -14.34863 -13.89809 -13.79762 -13.75614 -13.39397 -13.07454 -12.80880 -12.67179 -12.60701 -12.43616 -12.40614 -12.25666 -11.96765 -11.90540 -11.76014 -11.51535 -10.97889 -10.88824 -10.74185 -10.52426 -10.42810 -9.83809 -9.72431 -9.53555 -9.01055 -8.93017 -8.86411 -8.58729 -8.32806 -7.96708 -6.60097 -4.28444 0.55549 1.13963 2.34932 2.82346 2.94849 3.33631 3.41511 3.43209 3.55571 3.56484 3.77995 4.37483 4.63297 4.71167 4.83649 4.88533 5.00191 5.04812 5.12542 5.15742 5.24304 5.28595 5.40058 5.59405 5.65165 5.77040 5.96809 6.00422 6.02261 6.04332 6.15301 6.19886 6.24991 6.43642 6.54536 6.60486 6.72319 6.74182 6.82480 6.94700 7.09519 7.14803 7.31570 7.41264 7.68333 7.69110 8.19001 8.50178 8.66889 8.98944 9.42451 10.80728 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003001 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.760738 B = 9326.729358 C =10306.079486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.258 3.742 4 H 0.051 0.949 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.904 5.904 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.707 5.707 14 C 0.693 3.307 15 O -0.575 6.575 16 N -0.676 5.676 17 C 0.252 3.748 18 C -0.148 4.148 19 C -0.036 4.036 20 C -0.161 4.161 21 C 0.533 3.467 22 O -0.526 6.526 23 O -0.512 6.512 24 C -0.057 4.057 25 C 0.023 3.977 26 N -0.503 5.503 27 C 0.024 3.976 28 C 0.028 3.972 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.269 0.731 35 H 0.392 0.608 36 H 0.413 0.587 37 H 0.169 0.831 38 H 0.140 0.860 39 H 0.412 0.588 40 H 0.134 0.866 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 7.428 12.492 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.154 3.846 4 H 0.069 0.931 5 C -0.649 4.649 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.537 5.537 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.197 1.197 12 H -0.214 1.214 13 N -0.357 5.357 14 C 0.393 3.607 15 O -0.454 6.454 16 N -0.320 5.320 17 C 0.150 3.850 18 C -0.169 4.169 19 C -0.055 4.055 20 C -0.165 4.165 21 C 0.378 3.622 22 O -0.417 6.417 23 O -0.323 6.323 24 C -0.078 4.078 25 C -0.074 4.074 26 N -0.224 5.224 27 C -0.123 4.123 28 C -0.119 4.119 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.250 0.750 37 H 0.187 0.813 38 H 0.158 0.842 39 H 0.270 0.730 40 H 0.151 0.849 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.489 6.372 10.129 20.374 hybrid contribution -0.754 1.062 2.906 3.185 sum -17.243 7.434 13.035 22.858 Atomic orbital electron populations 1.21876 0.97035 0.98933 1.02197 1.22273 0.94122 0.99920 1.01356 1.19210 0.95771 0.88280 0.81316 0.93118 1.22160 0.89612 1.48731 1.04352 0.91979 1.25702 0.97484 0.93639 1.00115 1.70834 1.04238 1.42482 1.36169 0.83952 0.75339 0.77214 0.75797 1.20695 1.19742 1.21397 1.45580 1.13126 1.58061 1.18979 1.16136 0.83687 0.78728 0.82115 1.90827 1.51138 1.64733 1.38680 1.42741 1.11696 1.59404 1.18177 1.17725 0.84560 0.90656 0.92028 1.21739 0.94844 0.99612 1.00710 1.21404 0.94440 0.93727 0.95942 1.18759 0.92063 1.10667 0.94975 1.20880 0.86125 0.73678 0.81475 1.90871 1.71080 1.53236 1.26531 1.84591 1.32974 1.75920 1.38837 1.21363 0.93062 0.94946 0.98424 1.18273 0.91811 1.06307 0.91008 1.59544 1.48133 1.07654 1.07086 1.22519 1.00708 0.93566 0.95518 1.22466 0.97295 0.92716 0.99373 0.93160 0.92806 0.95083 0.92186 0.92752 0.92105 0.77540 0.75017 0.81349 0.84207 0.73004 0.84855 0.94901 0.90677 0.91042 0.90989 0.90709 0.94947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.52 37.16 0.32 -2.46 16 2 C -0.14 -2.94 5.20 -26.73 -0.14 -3.08 16 3 C 0.26 5.84 1.81 -69.08 -0.13 5.71 16 4 H 0.05 1.26 6.06 -51.93 -0.31 0.95 16 5 C -0.61 -15.88 9.09 -34.44 -0.31 -16.19 16 6 H 0.06 1.69 7.95 -52.49 -0.42 1.27 16 7 C 0.04 1.00 5.43 -17.82 -0.10 0.91 16 8 N -0.90 -26.50 13.70 55.43 0.76 -25.74 16 9 Si 1.05 24.72 25.36 -169.99 -4.31 20.41 16 10 H -0.28 -6.28 6.76 56.52 0.38 -5.90 16 11 H -0.27 -6.16 6.36 56.52 0.36 -5.80 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.71 -13.28 5.03 -59.81 -0.30 -13.58 16 14 C 0.69 12.23 7.03 -86.92 -0.61 11.62 16 15 O -0.58 -11.51 10.49 5.29 0.06 -11.45 16 16 N -0.68 -9.44 5.23 -14.08 -0.07 -9.52 16 17 C 0.25 3.41 6.43 -83.50 -0.54 2.87 16 18 C -0.15 -2.05 8.73 -39.50 -0.34 -2.39 16 19 C -0.04 -0.43 9.60 -39.18 -0.38 -0.80 16 20 C -0.16 -1.92 5.87 -104.98 -0.62 -2.54 16 21 C 0.53 6.12 8.26 34.48 0.28 6.41 16 22 O -0.53 -7.26 17.12 -19.28 -0.33 -7.59 16 23 O -0.51 -4.34 12.66 -40.63 -0.51 -4.86 16 24 C -0.06 -0.66 8.19 -38.99 -0.32 -0.98 16 25 C 0.02 0.27 4.73 -83.59 -0.40 -0.12 16 26 N -0.50 -5.06 4.35 -186.72 -0.81 -5.88 16 27 C 0.02 0.19 9.28 60.07 0.56 0.75 16 28 C 0.03 0.26 9.33 60.06 0.56 0.82 16 29 H 0.05 0.98 5.63 -51.93 -0.29 0.68 16 30 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.34 4.43 -51.93 -0.23 1.11 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.27 7.79 8.72 -40.82 -0.36 7.44 16 35 H 0.39 6.57 8.54 -40.82 -0.35 6.22 16 36 H 0.41 4.94 8.34 -40.82 -0.34 4.60 16 37 H 0.17 2.66 5.67 -52.48 -0.30 2.36 16 38 H 0.14 1.43 7.60 -52.48 -0.40 1.03 16 39 H 0.41 1.57 9.11 45.56 0.42 1.99 16 40 H 0.13 1.49 6.65 -52.49 -0.35 1.14 16 41 H 0.03 0.26 7.26 -51.93 -0.38 -0.12 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 44 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.28 7.47 -51.93 -0.39 -0.11 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -31.86 371.83 -7.58 -39.44 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.50 Total: 12.66 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.16 Total: 0.50 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.43 Total: -54.71 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.79 Total: -23.90 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.31 Total: 20.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.86 -7.58 -39.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.111 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds