Wall clock time and date at job start Tue Mar 31 2020 18:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 H 1.09003 * 109.46635 * 305.46258 * 3 2 1 5 5 C 1.50700 * 109.47304 * 185.46489 * 3 2 1 6 6 H 1.07995 * 119.99829 * 245.33077 * 5 3 2 7 7 C 1.37879 * 119.99847 * 65.32576 * 5 3 2 8 8 N 1.31518 * 119.99647 * 186.08895 * 7 5 3 9 9 Si 1.86797 * 120.00082 * 6.09582 * 7 5 3 10 10 H 1.48507 * 109.46891 * 269.99471 * 9 7 5 11 11 H 1.48500 * 109.47332 * 29.99623 * 9 7 5 12 12 H 1.48503 * 109.47154 * 150.00172 * 9 7 5 13 13 N 1.46503 * 109.47538 * 65.45952 * 3 2 1 14 14 C 1.34772 * 120.00198 * 275.00671 * 13 3 2 15 15 O 1.21588 * 120.00124 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00291 * 180.02562 * 14 13 3 17 17 C 1.39633 * 120.00423 * 184.79053 * 16 14 13 18 18 C 1.38937 * 119.94432 * 331.66122 * 17 16 14 19 19 C 1.37750 * 120.16473 * 179.72161 * 18 17 16 20 20 C 1.39787 * 120.04814 * 0.55131 * 19 18 17 21 21 C 1.47450 * 120.05688 * 179.74667 * 20 19 18 22 22 O 1.21517 * 120.00018 * 179.97438 * 21 20 19 23 23 O 1.34752 * 120.00134 * 359.97180 * 21 20 19 24 24 C 1.39798 * 119.88536 * 359.71782 * 20 19 18 25 25 C 1.38258 * 119.84094 * 0.02562 * 24 20 19 26 26 N 1.39952 * 120.02286 * 179.97438 * 25 24 20 27 27 C 1.46901 * 111.00008 * 300.01463 * 26 25 24 28 28 C 1.46894 * 111.00359 * 63.97428 * 26 25 24 29 29 H 1.09004 * 109.46934 * 300.00388 * 1 2 3 30 30 H 1.09003 * 109.46803 * 60.00434 * 1 2 3 31 31 H 1.09005 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47159 * 239.99541 * 2 1 3 33 33 H 1.09003 * 109.46803 * 119.99566 * 2 1 3 34 34 H 0.96995 * 120.00201 * 354.97630 * 8 7 5 35 35 H 0.97001 * 119.99396 * 95.00095 * 13 3 2 36 36 H 0.96998 * 119.99641 * 4.78137 * 16 14 13 37 37 H 1.08009 * 119.91664 * 359.97438 * 18 17 16 38 38 H 1.08004 * 119.97948 * 180.27023 * 19 18 17 39 39 H 0.96705 * 117.00406 * 179.97438 * 23 21 20 40 40 H 1.07997 * 120.08014 * 180.02562 * 24 20 19 41 41 H 1.09002 * 109.47054 * 63.95729 * 27 26 25 42 42 H 1.09000 * 109.47345 * 183.95427 * 27 26 25 43 43 H 1.08996 * 109.47027 * 303.95693 * 27 26 25 44 44 H 1.08999 * 109.47052 * 56.04297 * 28 26 25 45 45 H 1.09003 * 109.47201 * 176.04368 * 28 26 25 46 46 H 1.09004 * 109.47278 * 296.04498 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5990 1.9837 -0.8371 5 6 3.5410 1.4446 -0.1353 6 1 4.1556 1.8086 0.6747 7 6 4.1294 0.9818 -1.2932 8 7 5.4378 0.8711 -1.3669 9 14 3.0683 0.5123 -2.7570 10 1 2.7032 -0.9242 -2.6632 11 1 1.8338 1.3376 -2.7586 12 1 3.8243 0.7498 -4.0129 13 7 1.6620 2.0942 1.2564 14 6 0.4457 2.6607 1.3824 15 8 -0.3378 2.6314 0.4531 16 7 0.0981 3.2607 2.5380 17 6 -1.1955 3.7593 2.7044 18 6 -1.9223 4.1846 1.5993 19 6 -3.2010 4.6719 1.7575 20 6 -3.7672 4.7506 3.0332 21 6 -5.1338 5.2774 3.2034 22 8 -5.6252 5.3450 4.3127 23 8 -5.8379 5.6840 2.1288 24 6 -3.0357 4.3285 4.1472 25 6 -1.7546 3.8352 3.9825 26 7 -1.0187 3.4120 5.0951 27 6 -0.8292 4.5119 6.0502 28 6 -1.6580 2.2580 5.7412 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.9930 1.1829 -0.6352 35 1 2.2872 2.1178 1.9977 36 1 0.7466 3.3461 3.2543 37 1 -1.4851 4.1293 0.6132 38 1 -3.7649 4.9977 0.8959 39 1 -6.7296 6.0215 2.2901 40 1 -3.4702 4.3875 5.1342 41 1 -1.7972 4.8232 6.4428 42 1 -0.1955 4.1755 6.8708 43 1 -0.3541 5.3533 5.5458 44 1 -1.7864 1.4583 5.0118 45 1 -1.0300 1.9059 6.5596 46 1 -2.6318 2.5535 6.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:07 Heat of formation + Delta-G solvation = -102.133808 kcal Electronic energy + Delta-G solvation = -29446.694554 eV Core-core repulsion = 25335.811966 eV Total energy + Delta-G solvation = -4110.882588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09016 -41.21483 -40.22203 -37.77859 -37.16849 -37.04800 -35.72015 -34.48475 -33.18376 -31.26044 -30.77552 -29.00160 -28.52229 -26.02155 -25.37443 -24.21126 -23.26174 -22.39995 -21.75358 -21.44844 -20.19325 -19.32163 -18.93523 -18.57195 -18.22920 -17.09148 -16.74888 -16.61965 -16.44682 -16.40074 -15.95255 -15.67238 -15.21653 -14.92144 -14.79963 -14.63644 -14.53310 -14.30676 -14.26587 -13.76522 -13.72368 -13.56019 -13.20948 -13.11351 -12.71954 -12.65382 -12.61541 -12.51292 -12.39924 -12.25224 -11.84935 -11.69846 -11.62090 -11.37487 -11.00348 -10.84518 -10.65765 -9.96307 -9.87669 -9.64897 -9.12874 -8.75764 -6.44938 -0.42097 0.19123 1.38590 1.45163 1.54245 1.66093 1.71489 2.06326 2.15663 2.43054 2.68620 2.78212 3.05931 3.30408 3.74913 3.98381 4.07615 4.13987 4.23981 4.32970 4.37103 4.38729 4.40995 4.53486 4.61017 4.62267 4.80948 4.87101 4.96385 4.98994 5.03664 5.06878 5.11480 5.17599 5.21253 5.31040 5.37122 5.54523 5.57122 5.60318 5.65986 5.73767 5.84187 6.01045 6.12110 6.23611 6.53920 6.96083 7.09745 7.30931 7.57639 8.63631 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003001 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.760738 B = 9326.729358 C =10306.079486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.266 3.734 4 H 0.031 0.969 5 C -0.603 4.603 6 H 0.041 0.959 7 C -0.009 4.009 8 N -0.937 5.937 9 Si 1.079 2.921 10 H -0.259 1.259 11 H -0.260 1.260 12 H -0.290 1.290 13 N -0.710 5.710 14 C 0.696 3.304 15 O -0.598 6.598 16 N -0.662 5.662 17 C 0.231 3.769 18 C -0.159 4.159 19 C -0.030 4.030 20 C -0.163 4.163 21 C 0.540 3.460 22 O -0.551 6.551 23 O -0.504 6.504 24 C -0.057 4.057 25 C 0.036 3.964 26 N -0.512 5.512 27 C 0.024 3.976 28 C 0.029 3.971 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.257 0.743 35 H 0.401 0.599 36 H 0.423 0.577 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.433 0.567 40 H 0.141 0.859 41 H 0.036 0.964 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.019 7.491 13.566 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.161 3.839 4 H 0.049 0.951 5 C -0.641 4.641 6 H 0.059 0.941 7 C -0.209 4.209 8 N -0.573 5.573 9 Si 0.902 3.098 10 H -0.184 1.184 11 H -0.185 1.185 12 H -0.216 1.216 13 N -0.361 5.361 14 C 0.397 3.603 15 O -0.478 6.478 16 N -0.307 5.307 17 C 0.131 3.869 18 C -0.181 4.181 19 C -0.048 4.048 20 C -0.166 4.166 21 C 0.386 3.614 22 O -0.444 6.444 23 O -0.317 6.317 24 C -0.078 4.078 25 C -0.061 4.061 26 N -0.233 5.233 27 C -0.123 4.123 28 C -0.118 4.118 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.235 0.765 36 H 0.261 0.739 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.295 0.705 40 H 0.158 0.842 41 H 0.055 0.945 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.784 6.468 11.256 22.834 hybrid contribution -0.142 1.161 2.677 2.922 sum -18.926 7.629 13.934 24.709 Atomic orbital electron populations 1.21740 0.95264 1.00286 1.01568 1.22174 0.95599 0.98451 1.01170 1.18828 0.93253 0.89429 0.82408 0.95089 1.22360 0.91541 1.46921 1.03286 0.94087 1.26831 0.97653 0.93731 1.02696 1.70935 1.05258 1.44932 1.36154 0.83572 0.74528 0.78501 0.73213 1.18425 1.18484 1.21620 1.45268 1.14107 1.58612 1.18149 1.16095 0.82892 0.78540 0.82757 1.90823 1.51652 1.65510 1.39829 1.42418 1.12317 1.58776 1.17177 1.17866 0.84329 0.91878 0.92846 1.21591 0.95757 1.00775 0.99933 1.21475 0.93704 0.93047 0.96618 1.18926 0.92544 1.10130 0.94966 1.20723 0.85954 0.73201 0.81513 1.90868 1.71598 1.54409 1.27568 1.84543 1.34421 1.75316 1.37448 1.21476 0.92927 0.94601 0.98762 1.18277 0.91754 1.05113 0.90977 1.59591 1.47906 1.08529 1.07265 1.22576 1.01257 0.92946 0.95476 1.22490 0.97981 0.91900 0.99395 0.93405 0.93807 0.92672 0.92976 0.92318 0.93333 0.76480 0.73852 0.83442 0.82631 0.70459 0.84150 0.94522 0.88970 0.91250 0.92303 0.88947 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 8.52 71.98 0.61 -4.24 16 2 C -0.14 -5.59 5.20 30.59 0.16 -5.43 16 3 C 0.27 11.97 1.81 44.24 0.08 12.05 16 4 H 0.03 1.54 6.06 -2.39 -0.01 1.53 16 5 C -0.60 -31.74 9.09 25.60 0.23 -31.51 16 6 H 0.04 2.28 7.95 -2.91 -0.02 2.26 16 7 C -0.01 -0.53 5.43 84.65 0.46 -0.07 16 8 N -0.94 -56.09 13.70 21.45 0.29 -55.80 16 9 Si 1.08 49.58 25.36 68.60 1.74 51.32 16 10 H -0.26 -10.96 6.76 99.48 0.67 -10.29 16 11 H -0.26 -11.37 6.36 99.48 0.63 -10.74 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 N -0.71 -26.42 5.03 -461.42 -2.32 -28.74 16 14 C 0.70 24.26 7.03 179.06 1.26 25.51 16 15 O -0.60 -23.79 10.49 -3.99 -0.04 -23.83 16 16 N -0.66 -17.96 5.23 -316.73 -1.66 -19.62 16 17 C 0.23 6.03 6.43 38.42 0.25 6.28 16 18 C -0.16 -4.31 8.73 22.32 0.19 -4.12 16 19 C -0.03 -0.66 9.60 22.53 0.22 -0.45 16 20 C -0.16 -3.57 5.87 -20.10 -0.12 -3.69 16 21 C 0.54 11.25 8.26 70.25 0.58 11.83 16 22 O -0.55 -14.16 17.12 19.78 0.34 -13.82 16 23 O -0.50 -7.20 12.66 -56.62 -0.72 -7.91 16 24 C -0.06 -1.22 8.19 22.65 0.19 -1.03 16 25 C 0.04 0.79 4.73 38.20 0.18 0.97 16 26 N -0.51 -9.28 4.35 -744.65 -3.24 -12.52 16 27 C 0.02 0.33 9.28 127.69 1.19 1.52 16 28 C 0.03 0.46 9.33 127.69 1.19 1.65 16 29 H 0.05 1.78 5.63 -2.38 -0.01 1.77 16 30 H 0.04 1.70 7.87 -2.39 -0.02 1.68 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.05 2.24 4.43 -2.39 -0.01 2.23 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.26 15.44 8.72 -92.71 -0.81 14.63 16 35 H 0.40 13.31 8.54 -92.71 -0.79 12.52 16 36 H 0.42 9.66 8.34 -92.71 -0.77 8.89 16 37 H 0.15 4.69 5.67 -2.91 -0.02 4.68 16 38 H 0.16 2.90 7.60 -2.91 -0.02 2.88 16 39 H 0.43 2.05 9.11 -74.05 -0.67 1.38 16 40 H 0.14 2.84 6.65 -2.91 -0.02 2.82 16 41 H 0.04 0.49 7.26 -2.39 -0.02 0.47 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 44 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.04 0.56 7.47 -2.38 -0.02 0.54 16 Total: -1.00 -68.57 371.83 -0.26 -68.83 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -1.33 Total: 32.83 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.67 Total: 9.26 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -6.92 Total: -116.68 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.42 Total: -45.57 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.74 Total: 51.32 kcal Total: -68.57 -0.26 -68.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.305 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds