Wall clock time and date at job start Tue Mar 31 2020 18:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47509 * 2 1 4 4 H 1.08993 * 109.47284 * 54.99147 * 3 2 1 5 5 C 1.50697 * 109.47427 * 175.00064 * 3 2 1 6 6 H 1.07998 * 120.00413 * 119.99636 * 5 3 2 7 7 C 1.37885 * 119.99809 * 299.99550 * 5 3 2 8 8 N 1.31519 * 119.99558 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00028 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46834 * 119.99637 * 9 7 5 12 12 H 1.48491 * 109.47174 * 240.00062 * 9 7 5 13 13 N 1.46510 * 109.46537 * 294.99677 * 3 2 1 14 14 C 1.34771 * 119.99842 * 85.00281 * 13 3 2 15 15 O 1.21585 * 120.00571 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00020 * 180.02562 * 14 13 3 17 17 C 1.39636 * 120.00353 * 185.62668 * 16 14 13 18 18 C 1.38940 * 119.94030 * 24.85398 * 17 16 14 19 19 C 1.37766 * 120.15824 * 179.72991 * 18 17 16 20 20 C 1.39780 * 120.04729 * 0.54486 * 19 18 17 21 21 C 1.47459 * 120.05554 * 179.75130 * 20 19 18 22 22 O 1.21502 * 119.99827 * 179.97438 * 21 20 19 23 23 O 1.34754 * 119.99717 * 359.97438 * 21 20 19 24 24 C 1.39805 * 119.88895 * 359.72821 * 20 19 18 25 25 C 1.38254 * 119.84000 * 0.02562 * 24 20 19 26 26 N 1.39954 * 120.02500 * 179.97438 * 25 24 20 27 27 C 1.46900 * 110.99835 * 300.02021 * 26 25 24 28 28 C 1.46897 * 111.00037 * 63.97246 * 26 25 24 29 29 H 1.09002 * 109.46647 * 60.00638 * 1 2 3 30 30 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47335 * 300.00682 * 1 2 3 32 32 H 1.08996 * 109.47335 * 239.99318 * 2 1 3 33 33 H 1.09007 * 109.47041 * 119.99583 * 2 1 3 34 34 H 0.96998 * 119.99418 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99597 * 265.00085 * 13 3 2 36 36 H 0.97003 * 120.00266 * 5.34343 * 16 14 13 37 37 H 1.07996 * 119.92346 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.97332 * 180.25630 * 19 18 17 39 39 H 0.96700 * 116.99453 * 180.02562 * 23 21 20 40 40 H 1.08003 * 120.07953 * 180.02562 * 24 20 19 41 41 H 1.09003 * 109.47337 * 63.95060 * 27 26 25 42 42 H 1.08996 * 109.47341 * 183.95525 * 27 26 25 43 43 H 1.09008 * 109.47246 * 303.95118 * 27 26 25 44 44 H 1.09006 * 109.46907 * 56.04576 * 28 26 25 45 45 H 1.08998 * 109.47006 * 176.04872 * 28 26 25 46 46 H 1.09003 * 109.47068 * 296.04709 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8784 1.2281 8 7 3.4061 0.3367 2.1729 9 14 6.0050 0.8799 1.3813 10 1 6.5989 1.5450 0.1937 11 1 6.3999 1.6157 2.6092 12 1 6.4961 -0.5191 1.4629 13 7 1.6525 2.0974 -1.2520 14 6 0.4353 2.6643 -1.3671 15 8 -0.3414 2.6319 -0.4323 16 7 0.0786 3.2663 -2.5190 17 6 -1.1334 3.9550 -2.6007 18 6 -1.7178 4.4690 -1.4498 19 6 -2.9107 5.1540 -1.5260 20 6 -3.5425 5.3240 -2.7612 21 6 -4.8221 6.0525 -2.8421 22 8 -5.3702 6.2000 -3.9164 23 8 -5.3834 6.5544 -1.7247 24 6 -2.9591 4.8027 -3.9197 25 6 -1.7593 4.1204 -3.8387 26 7 -1.1721 3.5965 -4.9960 27 6 -2.0623 2.6241 -5.6440 28 6 -0.7964 4.6685 -5.9273 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0617 2.9496 35 1 2.2721 2.1229 -1.9979 36 1 0.6656 3.2247 -3.2901 37 1 -1.2339 4.3347 -0.4937 38 1 -3.3603 5.5559 -0.6300 39 1 -6.2226 7.0238 -1.8278 40 1 -3.4444 4.9326 -4.8758 41 1 -2.9683 3.1285 -5.9801 42 1 -1.5543 2.1809 -6.5004 43 1 -2.3250 1.8413 -4.9324 44 1 -0.1373 5.3745 -5.4219 45 1 -0.2795 4.2395 -6.7857 46 1 -1.6935 5.1871 -6.2654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609913753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:10 Heat of formation + Delta-G solvation = -79.262194 kcal Electronic energy + Delta-G solvation = -29306.329312 eV Core-core repulsion = 25196.438511 eV Total energy + Delta-G solvation = -4109.890801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92514 -40.07181 -39.00899 -36.62298 -36.22821 -35.48374 -34.27163 -32.50361 -31.07699 -30.19929 -29.57294 -27.80183 -26.96358 -25.06340 -24.33233 -23.01648 -22.05881 -21.09246 -20.50382 -19.58963 -18.41640 -17.98967 -17.82118 -17.19233 -16.08873 -15.79068 -15.63896 -15.56711 -15.19761 -15.15446 -14.87874 -14.28480 -14.01668 -13.75953 -13.72101 -13.31918 -12.95868 -12.76559 -12.66286 -12.52302 -12.36154 -12.12245 -11.91470 -11.72805 -11.59222 -11.42639 -11.29369 -10.98421 -10.89980 -10.80315 -10.36802 -10.31112 -10.21935 -9.64134 -9.44134 -9.07773 -8.90481 -8.83918 -8.55252 -8.11315 -7.77186 -6.16739 -4.26043 0.63998 1.21570 2.41938 2.89275 3.06990 3.21221 3.29823 3.32296 3.51380 3.62463 3.92664 4.28858 4.75131 4.82030 4.90944 4.94963 5.07817 5.09995 5.15305 5.18865 5.29025 5.36098 5.47865 5.63647 5.70421 5.83867 6.04836 6.09355 6.23173 6.31563 6.38081 6.45108 6.52108 6.60439 6.64005 6.80689 6.97463 7.06943 7.21706 7.30798 7.32526 7.39747 7.60846 7.75323 7.81625 7.92110 8.14153 8.66582 8.77330 9.14201 9.41779 10.88606 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002771 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.245959 B =10101.467518 C =10835.601356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.714 5.714 14 C 0.690 3.310 15 O -0.572 6.572 16 N -0.676 5.676 17 C 0.258 3.742 18 C -0.149 4.149 19 C -0.034 4.034 20 C -0.165 4.165 21 C 0.533 3.467 22 O -0.528 6.528 23 O -0.512 6.512 24 C -0.055 4.055 25 C 0.019 3.981 26 N -0.503 5.503 27 C 0.028 3.972 28 C 0.024 3.976 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.412 0.588 37 H 0.166 0.834 38 H 0.140 0.860 39 H 0.411 0.589 40 H 0.133 0.867 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 8.848 -13.112 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.364 5.364 14 C 0.391 3.609 15 O -0.450 6.450 16 N -0.320 5.320 17 C 0.156 3.844 18 C -0.170 4.170 19 C -0.053 4.053 20 C -0.169 4.169 21 C 0.379 3.621 22 O -0.419 6.419 23 O -0.323 6.323 24 C -0.076 4.076 25 C -0.078 4.078 26 N -0.224 5.224 27 C -0.119 4.119 28 C -0.123 4.123 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.249 0.751 37 H 0.183 0.817 38 H 0.158 0.842 39 H 0.269 0.731 40 H 0.151 0.849 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.951 8.184 -12.114 18.266 hybrid contribution 0.214 0.584 -1.047 1.218 sum -10.738 8.768 -13.161 19.115 Atomic orbital electron populations 1.21817 0.98235 0.97987 1.01256 1.21963 0.92708 0.99812 1.02306 1.18764 0.94111 0.88937 0.79764 0.93077 1.21244 0.90582 1.39121 1.06339 0.92007 1.24875 0.98634 0.94764 0.95362 1.69903 1.35061 1.37499 1.09346 0.86392 0.84784 0.77785 0.78126 1.19756 1.20880 1.20875 1.45890 1.12847 1.58278 1.19388 1.16151 0.83746 0.78856 0.82140 1.90862 1.51497 1.64224 1.38401 1.42859 1.19873 1.54017 1.15291 1.17727 0.85430 0.88987 0.92305 1.21599 0.97066 0.98523 0.99842 1.21378 0.93554 0.93847 0.96517 1.18730 0.95051 1.07974 0.95108 1.20884 0.84730 0.75539 0.80941 1.90862 1.63702 1.57299 1.30000 1.84597 1.41641 1.68422 1.37665 1.21349 0.94116 0.94257 0.97869 1.18221 0.94199 1.04402 0.91003 1.59540 1.42286 1.15492 1.05041 1.22466 0.94567 0.95404 0.99450 1.22520 1.00287 0.93527 0.95950 0.94317 0.95972 0.93095 0.95048 0.88215 0.92559 0.78032 0.75140 0.81699 0.84241 0.73074 0.84920 0.94960 0.90765 0.90948 0.91066 0.90732 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.29 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.50 8.73 -34.44 -0.30 -13.80 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.81 -0.09 1.64 16 8 N -0.88 -23.90 11.29 55.43 0.63 -23.27 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -13.79 5.03 -59.81 -0.30 -14.10 16 14 C 0.69 12.78 6.93 -86.93 -0.60 12.18 16 15 O -0.57 -12.22 10.62 5.29 0.06 -12.16 16 16 N -0.68 -9.87 5.25 -14.08 -0.07 -9.94 16 17 C 0.26 3.66 6.45 -83.50 -0.54 3.12 16 18 C -0.15 -2.18 8.69 -39.49 -0.34 -2.53 16 19 C -0.03 -0.43 9.60 -39.18 -0.38 -0.80 16 20 C -0.17 -2.06 5.87 -104.98 -0.62 -2.68 16 21 C 0.53 6.40 8.26 34.49 0.28 6.69 16 22 O -0.53 -7.52 17.12 -19.27 -0.33 -7.85 16 23 O -0.51 -4.61 12.66 -40.64 -0.51 -5.13 16 24 C -0.06 -0.67 8.19 -38.99 -0.32 -0.99 16 25 C 0.02 0.23 4.73 -83.59 -0.40 -0.16 16 26 N -0.50 -5.25 4.31 -186.71 -0.81 -6.06 16 27 C 0.03 0.26 9.28 60.06 0.56 0.82 16 28 C 0.02 0.20 9.33 60.06 0.56 0.76 16 29 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.39 6.50 8.56 -40.82 -0.35 6.15 16 36 H 0.41 5.10 8.28 -40.82 -0.34 4.76 16 37 H 0.17 2.77 5.77 -52.49 -0.30 2.47 16 38 H 0.14 1.53 7.60 -52.49 -0.40 1.13 16 39 H 0.41 1.77 9.11 45.56 0.42 2.18 16 40 H 0.13 1.54 6.65 -52.48 -0.35 1.19 16 41 H 0.03 0.29 7.26 -51.93 -0.38 -0.09 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.76 8.13 -51.92 -0.42 0.33 16 44 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.03 0.26 7.47 -51.93 -0.39 -0.12 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -30.72 377.30 -8.41 -39.13 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.57 Total: 13.57 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.17 Total: 5.12 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.55 Total: -53.37 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.79 Total: -25.14 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.72 -8.41 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.130 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds