Wall clock time and date at job start Tue Mar 31 2020 18:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47509 * 2 1 4 4 H 1.08993 * 109.47284 * 54.99147 * 3 2 1 5 5 C 1.50697 * 109.47427 * 175.00064 * 3 2 1 6 6 H 1.07998 * 120.00413 * 119.99636 * 5 3 2 7 7 C 1.37885 * 119.99809 * 299.99550 * 5 3 2 8 8 N 1.31519 * 119.99558 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00028 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46834 * 119.99637 * 9 7 5 12 12 H 1.48491 * 109.47174 * 240.00062 * 9 7 5 13 13 N 1.46510 * 109.46537 * 294.99677 * 3 2 1 14 14 C 1.34771 * 119.99842 * 85.00281 * 13 3 2 15 15 O 1.21585 * 120.00571 * 359.97438 * 14 13 3 16 16 N 1.34774 * 120.00020 * 180.02562 * 14 13 3 17 17 C 1.39636 * 120.00353 * 185.62668 * 16 14 13 18 18 C 1.38940 * 119.94030 * 24.85398 * 17 16 14 19 19 C 1.37766 * 120.15824 * 179.72991 * 18 17 16 20 20 C 1.39780 * 120.04729 * 0.54486 * 19 18 17 21 21 C 1.47459 * 120.05554 * 179.75130 * 20 19 18 22 22 O 1.21502 * 119.99827 * 179.97438 * 21 20 19 23 23 O 1.34754 * 119.99717 * 359.97438 * 21 20 19 24 24 C 1.39805 * 119.88895 * 359.72821 * 20 19 18 25 25 C 1.38254 * 119.84000 * 0.02562 * 24 20 19 26 26 N 1.39954 * 120.02500 * 179.97438 * 25 24 20 27 27 C 1.46900 * 110.99835 * 300.02021 * 26 25 24 28 28 C 1.46897 * 111.00037 * 63.97246 * 26 25 24 29 29 H 1.09002 * 109.46647 * 60.00638 * 1 2 3 30 30 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47335 * 300.00682 * 1 2 3 32 32 H 1.08996 * 109.47335 * 239.99318 * 2 1 3 33 33 H 1.09007 * 109.47041 * 119.99583 * 2 1 3 34 34 H 0.96998 * 119.99418 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99597 * 265.00085 * 13 3 2 36 36 H 0.97003 * 120.00266 * 5.34343 * 16 14 13 37 37 H 1.07996 * 119.92346 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.97332 * 180.25630 * 19 18 17 39 39 H 0.96700 * 116.99453 * 180.02562 * 23 21 20 40 40 H 1.08003 * 120.07953 * 180.02562 * 24 20 19 41 41 H 1.09003 * 109.47337 * 63.95060 * 27 26 25 42 42 H 1.08996 * 109.47341 * 183.95525 * 27 26 25 43 43 H 1.09008 * 109.47246 * 303.95118 * 27 26 25 44 44 H 1.09006 * 109.46907 * 56.04576 * 28 26 25 45 45 H 1.08998 * 109.47006 * 176.04872 * 28 26 25 46 46 H 1.09003 * 109.47068 * 296.04709 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8784 1.2281 8 7 3.4061 0.3367 2.1729 9 14 6.0050 0.8799 1.3813 10 1 6.5989 1.5450 0.1937 11 1 6.3999 1.6157 2.6092 12 1 6.4961 -0.5191 1.4629 13 7 1.6525 2.0974 -1.2520 14 6 0.4353 2.6643 -1.3671 15 8 -0.3414 2.6319 -0.4323 16 7 0.0786 3.2663 -2.5190 17 6 -1.1334 3.9550 -2.6007 18 6 -1.7178 4.4690 -1.4498 19 6 -2.9107 5.1540 -1.5260 20 6 -3.5425 5.3240 -2.7612 21 6 -4.8221 6.0525 -2.8421 22 8 -5.3702 6.2000 -3.9164 23 8 -5.3834 6.5544 -1.7247 24 6 -2.9591 4.8027 -3.9197 25 6 -1.7593 4.1204 -3.8387 26 7 -1.1721 3.5965 -4.9960 27 6 -2.0623 2.6241 -5.6440 28 6 -0.7964 4.6685 -5.9273 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0617 2.9496 35 1 2.2721 2.1229 -1.9979 36 1 0.6656 3.2247 -3.2901 37 1 -1.2339 4.3347 -0.4937 38 1 -3.3603 5.5559 -0.6300 39 1 -6.2226 7.0238 -1.8278 40 1 -3.4444 4.9326 -4.8758 41 1 -2.9683 3.1285 -5.9801 42 1 -1.5543 2.1809 -6.5004 43 1 -2.3250 1.8413 -4.9324 44 1 -0.1373 5.3745 -5.4219 45 1 -0.2795 4.2395 -6.7857 46 1 -1.6935 5.1871 -6.2654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:10 Heat of formation + Delta-G solvation = -100.698193 kcal Electronic energy + Delta-G solvation = -29307.258846 eV Core-core repulsion = 25196.438511 eV Total energy + Delta-G solvation = -4110.820335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04725 -41.17595 -40.16852 -37.67765 -37.12739 -36.98128 -35.67385 -34.31410 -32.79471 -31.24357 -30.74172 -28.79854 -28.49183 -26.02488 -25.47150 -24.73314 -23.20694 -22.24661 -21.71510 -21.32499 -19.77421 -19.08296 -18.90564 -18.25929 -17.83511 -17.06578 -16.74483 -16.63675 -16.44443 -16.24669 -16.01124 -15.82834 -15.30469 -14.79810 -14.76467 -14.59064 -14.49809 -14.26749 -13.72692 -13.62568 -13.46216 -13.17549 -13.14986 -13.08911 -12.82828 -12.68701 -12.62363 -12.60676 -12.40467 -12.10809 -12.03744 -11.81067 -11.65629 -11.45499 -11.03935 -10.89523 -10.51611 -9.93730 -9.71492 -9.61980 -9.03893 -8.13535 -6.29738 -0.39698 0.20573 1.39751 1.46365 1.48196 1.58819 1.74679 2.07791 2.22395 2.44512 2.72680 2.80637 3.16570 3.43296 3.75810 3.99845 4.08828 4.16548 4.26153 4.39915 4.42275 4.54017 4.61382 4.62753 4.65480 4.78443 4.83305 4.98938 5.01702 5.04438 5.08580 5.11252 5.20266 5.29306 5.39717 5.48101 5.55251 5.57796 5.64483 5.70915 5.79881 5.87543 5.89809 6.19864 6.24741 6.29254 6.78275 6.97164 7.23100 7.38066 7.69382 8.91947 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002771 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.245959 B =10101.467518 C =10835.601356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.005 0.995 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.711 5.711 14 C 0.693 3.307 15 O -0.603 6.603 16 N -0.660 5.660 17 C 0.236 3.764 18 C -0.163 4.163 19 C -0.029 4.029 20 C -0.166 4.166 21 C 0.540 3.460 22 O -0.551 6.551 23 O -0.504 6.504 24 C -0.054 4.054 25 C 0.034 3.966 26 N -0.511 5.511 27 C 0.028 3.972 28 C 0.024 3.976 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.028 0.972 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.424 0.576 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.433 0.567 40 H 0.142 0.858 41 H 0.038 0.962 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 9.477 -15.300 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.023 0.977 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.363 5.363 14 C 0.394 3.606 15 O -0.483 6.483 16 N -0.306 5.306 17 C 0.135 3.865 18 C -0.184 4.184 19 C -0.047 4.047 20 C -0.169 4.169 21 C 0.387 3.613 22 O -0.444 6.444 23 O -0.318 6.318 24 C -0.075 4.075 25 C -0.063 4.063 26 N -0.232 5.232 27 C -0.119 4.119 28 C -0.122 4.122 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.295 0.705 40 H 0.160 0.840 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.011 8.857 -14.358 20.145 hybrid contribution 0.088 0.479 -0.386 0.621 sum -10.923 9.336 -14.744 20.587 Atomic orbital electron populations 1.21639 0.97000 0.98850 1.00254 1.21809 0.93683 0.99322 1.01258 1.18294 0.93417 0.88794 0.80136 0.97748 1.21582 0.91371 1.38781 1.06596 0.91031 1.25710 1.03008 0.94475 0.95103 1.70049 1.36857 1.38358 1.09880 0.85359 0.79477 0.77709 0.78145 1.18500 1.21167 1.20637 1.45490 1.13703 1.58585 1.18553 1.16165 0.83072 0.78672 0.82730 1.90857 1.52295 1.65232 1.39903 1.42482 1.20350 1.53473 1.14270 1.17866 0.85550 0.89948 0.93098 1.21428 0.98038 0.99898 0.99079 1.21432 0.92739 0.93252 0.97319 1.18901 0.95370 1.07579 0.95048 1.20701 0.84364 0.75155 0.81085 1.90859 1.64287 1.58300 1.30964 1.84549 1.42962 1.68117 1.36160 1.21481 0.93958 0.93848 0.98205 1.18225 0.93772 1.03257 0.91077 1.59590 1.42327 1.16265 1.05055 1.22501 0.94953 0.94821 0.99577 1.22585 1.00572 0.93066 0.96000 0.94021 0.94042 0.95304 0.94188 0.90933 0.92636 0.76360 0.73725 0.84270 0.82816 0.70493 0.84001 0.94382 0.88790 0.92384 0.91233 0.88821 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.51 71.98 0.61 -4.69 16 2 C -0.12 -5.80 5.45 30.59 0.17 -5.64 16 3 C 0.30 14.54 2.24 44.24 0.10 14.64 16 4 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 5 C -0.54 -27.68 8.73 25.60 0.22 -27.46 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -50.78 11.29 21.45 0.24 -50.54 16 9 Si 0.97 41.00 29.54 68.60 2.03 43.03 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.71 -27.70 5.03 -461.42 -2.32 -30.02 16 14 C 0.69 26.03 6.93 179.06 1.24 27.28 16 15 O -0.60 -26.74 10.62 -3.98 -0.04 -26.78 16 16 N -0.66 -19.04 5.25 -316.73 -1.66 -20.71 16 17 C 0.24 6.62 6.45 38.42 0.25 6.87 16 18 C -0.16 -4.84 8.69 22.33 0.19 -4.65 16 19 C -0.03 -0.70 9.60 22.53 0.22 -0.49 16 20 C -0.17 -3.91 5.87 -20.10 -0.12 -4.03 16 21 C 0.54 11.98 8.26 70.25 0.58 12.56 16 22 O -0.55 -14.71 17.12 19.83 0.34 -14.37 16 23 O -0.50 -7.93 12.66 -56.65 -0.72 -8.65 16 24 C -0.05 -1.22 8.19 22.65 0.19 -1.04 16 25 C 0.03 0.79 4.73 38.20 0.18 0.97 16 26 N -0.51 -9.62 4.31 -744.63 -3.21 -12.83 16 27 C 0.03 0.46 9.28 127.69 1.19 1.65 16 28 C 0.02 0.34 9.33 127.69 1.19 1.53 16 29 H 0.04 1.79 5.64 -2.39 -0.01 1.77 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 3.90 5.95 -2.38 -0.01 3.88 16 34 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.40 13.19 8.56 -92.71 -0.79 12.39 16 36 H 0.42 9.99 8.28 -92.71 -0.77 9.23 16 37 H 0.14 4.93 5.77 -2.91 -0.02 4.91 16 38 H 0.15 3.24 7.60 -2.91 -0.02 3.22 16 39 H 0.43 2.60 9.11 -74.06 -0.67 1.93 16 40 H 0.14 2.99 6.65 -2.91 -0.02 2.97 16 41 H 0.04 0.58 7.26 -2.39 -0.02 0.57 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.13 8.13 -2.38 -0.02 1.11 16 44 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.04 0.49 7.47 -2.39 -0.02 0.48 16 Total: -1.00 -67.20 377.30 0.12 -67.08 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -1.18 Total: 34.94 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.65 Total: 18.85 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -6.95 Total: -114.10 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.42 Total: -49.80 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -67.20 0.12 -67.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.620 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds