Wall clock time and date at job start Tue Mar 31 2020 19:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 6 6 C 1.34785 * 119.99572 * 85.00499 * 5 3 2 7 7 C 1.50703 * 119.99767 * 179.97438 * 6 5 3 8 8 O 1.21274 * 119.99855 * 359.97438 * 6 5 3 9 9 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 10 10 O 1.21284 * 120.00381 * 119.99815 * 9 3 2 11 11 N 1.34779 * 120.00168 * 299.99481 * 9 3 2 12 12 C 1.39575 * 120.00299 * 180.02562 * 11 9 3 13 13 N 1.32275 * 119.72497 * 0.02562 * 12 11 9 14 14 C 1.31956 * 121.69102 * 179.97438 * 13 12 11 15 15 C 1.38096 * 120.95175 * 359.97438 * 14 13 12 16 16 C 1.38771 * 119.35429 * 0.02562 * 15 14 13 17 17 C 1.38802 * 118.44905 * 359.74951 * 16 15 14 18 18 O 1.35973 * 120.49788 * 180.24146 * 17 16 15 19 19 C 1.42906 * 116.99898 * 0.25369 * 18 17 16 20 20 C 1.53002 * 109.47052 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47200 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00203 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00197 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00091 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46963 * 60.00301 * 25 23 21 27 27 H 1.48502 * 109.46935 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47176 * 300.00195 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.96999 * 120.00274 * 264.99733 * 5 3 2 35 35 H 1.09004 * 109.47137 * 59.99859 * 7 6 5 36 36 H 1.08999 * 109.46844 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47037 * 299.99900 * 7 6 5 38 38 H 0.97002 * 119.99606 * 0.02562 * 11 9 3 39 39 H 1.07989 * 119.52507 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.31845 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.77164 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47031 * 299.99970 * 19 18 17 43 43 H 1.09003 * 109.47061 * 60.00265 * 19 18 17 44 44 H 1.09011 * 109.46883 * 300.00264 * 20 19 18 45 45 H 1.08995 * 109.47175 * 59.99659 * 20 19 18 46 46 H 0.96996 * 119.99398 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6644 -1.3670 7 6 0.0367 3.3385 -2.6546 8 8 -0.3395 2.6319 -0.4345 9 6 3.5419 1.4443 0.1238 10 8 4.2217 1.9435 -0.7477 11 7 4.1298 0.8912 1.2032 12 6 5.5208 0.8934 1.3181 13 7 6.2568 1.4401 0.3648 14 6 7.5744 1.4641 0.4340 15 6 8.2390 0.9154 1.5129 16 6 7.5074 0.3308 2.5370 17 6 6.1228 0.3241 2.4400 18 8 5.3650 -0.2332 3.4218 19 6 6.0593 -0.7944 4.5377 20 6 5.0476 -1.3690 5.5313 21 6 5.7797 -1.9602 6.7083 22 1 6.8586 -1.9296 6.7440 23 6 5.0721 -2.5402 7.7398 24 7 3.7581 -2.5779 7.6962 25 14 5.9797 -3.2738 9.1985 26 1 6.7827 -2.2168 9.8642 27 1 4.9977 -3.8313 10.1629 28 1 6.8800 -4.3567 8.7276 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.2720 2.1231 -1.9978 35 1 0.0680 2.6143 -3.4688 36 1 -0.9745 3.7344 -2.5597 37 1 0.7281 4.1540 -2.8669 38 1 3.5861 0.4917 1.9001 39 1 8.1410 1.9193 -0.3647 40 1 9.3178 0.9410 1.5592 41 1 8.0037 -0.1048 3.3916 42 1 6.7208 -1.5886 4.1919 43 1 6.6480 -0.0183 5.0270 44 1 4.3863 -0.5743 5.8770 45 1 4.4585 -2.1448 5.0423 46 1 3.2604 -2.9856 8.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611063726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:18 Heat of formation + Delta-G solvation = -73.987014 kcal Electronic energy + Delta-G solvation = -28577.974063 eV Core-core repulsion = 24468.312012 eV Total energy + Delta-G solvation = -4109.662052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15097 -40.27361 -39.05783 -37.83956 -35.56123 -35.03285 -33.50000 -32.80756 -31.69727 -30.65992 -29.97713 -29.28057 -27.16100 -25.45418 -23.72180 -22.88213 -22.26924 -21.18798 -20.69143 -20.29348 -18.68886 -17.83544 -17.54512 -16.66774 -16.51132 -16.16112 -15.98387 -15.79263 -15.56808 -14.99508 -14.87912 -14.59409 -14.31706 -14.17005 -13.95895 -13.78935 -13.46191 -12.93428 -12.83640 -12.71921 -12.42099 -12.33620 -12.14718 -12.08196 -11.96460 -11.68689 -11.10704 -11.06805 -10.99512 -10.82612 -10.71166 -10.34089 -10.10545 -10.08169 -9.80300 -9.46289 -9.38000 -9.29381 -9.08773 -8.53267 -7.75300 -6.18954 -4.24285 1.10784 1.37754 2.35654 2.48134 2.56382 3.12635 3.22954 3.27378 3.28766 3.47100 3.92637 4.14851 4.32588 4.54289 4.61862 4.70686 4.82094 4.88810 4.97517 5.01855 5.08372 5.15270 5.17785 5.19568 5.34726 5.39584 5.55068 5.61301 5.80643 5.82790 5.86232 5.90546 5.98832 6.09925 6.13062 6.24676 6.27386 6.50073 6.53889 7.10622 7.25534 7.30441 7.50440 7.58969 7.80384 7.90786 7.98789 8.12521 8.20796 8.80654 9.40750 10.92362 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.002724 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.495066 B =10275.000101 C =12518.118317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.129 3.871 4 H 0.118 0.882 5 N -0.713 5.713 6 C 0.513 3.487 7 C -0.173 4.173 8 O -0.539 6.539 9 C 0.505 3.495 10 O -0.479 6.479 11 N -0.645 5.645 12 C 0.325 3.675 13 N -0.443 5.443 14 C 0.074 3.926 15 C -0.157 4.157 16 C -0.148 4.148 17 C 0.071 3.929 18 O -0.315 6.315 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.888 5.888 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.410 0.590 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.426 0.574 39 H 0.157 0.843 40 H 0.135 0.865 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 8.395 -19.669 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.020 3.980 4 H 0.136 0.864 5 N -0.367 5.367 6 C 0.300 3.700 7 C -0.232 4.232 8 O -0.416 6.416 9 C 0.289 3.711 10 O -0.349 6.349 11 N -0.294 5.294 12 C 0.093 3.907 13 N -0.158 5.158 14 C -0.083 4.083 15 C -0.178 4.178 16 C -0.175 4.175 17 C 0.019 3.981 18 O -0.228 6.228 19 C -0.008 4.008 20 C -0.010 4.010 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.526 5.526 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.247 0.753 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.265 0.735 39 H 0.174 0.826 40 H 0.153 0.847 41 H 0.164 0.836 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.486 9.036 -20.251 22.225 hybrid contribution 1.315 -1.063 1.744 2.429 sum -0.170 7.973 -18.507 20.152 Atomic orbital electron populations 1.21792 0.93716 1.01269 1.03221 1.21956 0.98096 0.93593 1.03458 1.20861 0.90747 0.96153 0.90266 0.86406 1.45788 1.17236 1.57795 1.15898 1.20770 0.81013 0.77834 0.90383 1.21907 1.04330 1.01851 0.95158 1.90753 1.51098 1.58748 1.41008 1.20731 0.90048 0.78370 0.81939 1.90779 1.64444 1.41275 1.38369 1.43352 1.04153 1.58002 1.23878 1.17761 0.84684 0.98195 0.90098 1.67588 1.07355 1.15826 1.25054 1.22405 0.88925 0.99050 0.97897 1.21913 1.01236 0.99925 0.94735 1.21628 0.92135 1.02475 1.01244 1.19593 0.91064 0.97245 0.90173 1.86107 1.36138 1.70772 1.29767 1.23419 0.97675 0.95861 0.83841 1.19125 0.93922 0.96538 0.91439 1.20895 0.93123 1.38933 1.03850 0.92401 1.24980 0.94895 0.95767 0.98420 1.69953 1.05661 1.43994 1.32979 0.86543 0.79410 0.79493 0.81924 1.20063 1.21063 1.20072 0.92852 0.92504 0.91652 0.90068 0.91076 0.75309 0.89359 0.88847 0.89259 0.73511 0.82572 0.84711 0.83642 0.92888 0.92895 0.95314 0.95323 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.51 37.16 0.32 -1.18 16 2 C -0.13 -1.32 5.55 -26.73 -0.15 -1.46 16 3 C 0.13 1.40 2.67 -69.08 -0.18 1.21 16 4 H 0.12 1.35 7.58 -51.93 -0.39 0.96 16 5 N -0.71 -6.84 4.90 -54.93 -0.27 -7.11 16 6 C 0.51 5.07 6.51 -10.98 -0.07 5.00 16 7 C -0.17 -1.01 10.32 36.01 0.37 -0.64 16 8 O -0.54 -7.26 14.22 5.56 0.08 -7.18 16 9 C 0.50 6.66 7.19 -10.98 -0.08 6.59 16 10 O -0.48 -7.46 14.09 5.55 0.08 -7.38 16 11 N -0.65 -8.91 5.25 -11.29 -0.06 -8.97 16 12 C 0.33 5.13 7.45 -154.44 -1.15 3.98 16 13 N -0.44 -6.98 7.87 -12.23 -0.10 -7.07 16 14 C 0.07 0.94 11.17 -17.55 -0.20 0.75 16 15 C -0.16 -1.85 10.10 -39.44 -0.40 -2.25 16 16 C -0.15 -2.06 9.14 -39.18 -0.36 -2.42 16 17 C 0.07 1.13 6.72 -38.92 -0.26 0.87 16 18 O -0.32 -5.62 9.39 -19.65 -0.18 -5.80 16 19 C 0.07 1.27 4.70 37.16 0.17 1.44 16 20 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 21 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 22 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 24 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 25 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.62 5.64 -51.93 -0.29 0.33 16 31 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 32 H 0.08 0.78 7.43 -51.93 -0.39 0.39 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.41 3.52 7.79 -40.82 -0.32 3.20 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.43 5.34 7.40 -40.82 -0.30 5.04 16 39 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.15 1.88 6.44 -52.48 -0.34 1.54 16 42 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 43 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 44 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -33.10 384.48 -8.07 -41.17 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.58 Total: 6.06 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.54 Total: -0.36 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.31 Total: -47.85 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.03 Total: -20.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.10 -8.07 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611063726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.813 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds