Wall clock time and date at job start Tue Mar 31 2020 19:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 6 6 C 1.34785 * 119.99572 * 85.00499 * 5 3 2 7 7 C 1.50703 * 119.99767 * 179.97438 * 6 5 3 8 8 O 1.21274 * 119.99855 * 359.97438 * 6 5 3 9 9 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 10 10 O 1.21284 * 120.00381 * 119.99815 * 9 3 2 11 11 N 1.34779 * 120.00168 * 299.99481 * 9 3 2 12 12 C 1.39575 * 120.00299 * 180.02562 * 11 9 3 13 13 N 1.32275 * 119.72497 * 0.02562 * 12 11 9 14 14 C 1.31956 * 121.69102 * 179.97438 * 13 12 11 15 15 C 1.38096 * 120.95175 * 359.97438 * 14 13 12 16 16 C 1.38771 * 119.35429 * 0.02562 * 15 14 13 17 17 C 1.38802 * 118.44905 * 359.74951 * 16 15 14 18 18 O 1.35973 * 120.49788 * 180.24146 * 17 16 15 19 19 C 1.42906 * 116.99898 * 0.25369 * 18 17 16 20 20 C 1.53002 * 109.47052 * 179.97438 * 19 18 17 21 21 C 1.50695 * 109.47200 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00203 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00197 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00091 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46963 * 60.00301 * 25 23 21 27 27 H 1.48502 * 109.46935 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47176 * 300.00195 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 0.96999 * 120.00274 * 264.99733 * 5 3 2 35 35 H 1.09004 * 109.47137 * 59.99859 * 7 6 5 36 36 H 1.08999 * 109.46844 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47037 * 299.99900 * 7 6 5 38 38 H 0.97002 * 119.99606 * 0.02562 * 11 9 3 39 39 H 1.07989 * 119.52507 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.31845 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.77164 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47031 * 299.99970 * 19 18 17 43 43 H 1.09003 * 109.47061 * 60.00265 * 19 18 17 44 44 H 1.09011 * 109.46883 * 300.00264 * 20 19 18 45 45 H 1.08995 * 109.47175 * 59.99659 * 20 19 18 46 46 H 0.96996 * 119.99398 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4351 2.6644 -1.3670 7 6 0.0367 3.3385 -2.6546 8 8 -0.3395 2.6319 -0.4345 9 6 3.5419 1.4443 0.1238 10 8 4.2217 1.9435 -0.7477 11 7 4.1298 0.8912 1.2032 12 6 5.5208 0.8934 1.3181 13 7 6.2568 1.4401 0.3648 14 6 7.5744 1.4641 0.4340 15 6 8.2390 0.9154 1.5129 16 6 7.5074 0.3308 2.5370 17 6 6.1228 0.3241 2.4400 18 8 5.3650 -0.2332 3.4218 19 6 6.0593 -0.7944 4.5377 20 6 5.0476 -1.3690 5.5313 21 6 5.7797 -1.9602 6.7083 22 1 6.8586 -1.9296 6.7440 23 6 5.0721 -2.5402 7.7398 24 7 3.7581 -2.5779 7.6962 25 14 5.9797 -3.2738 9.1985 26 1 6.7827 -2.2168 9.8642 27 1 4.9977 -3.8313 10.1629 28 1 6.8800 -4.3567 8.7276 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.2720 2.1231 -1.9978 35 1 0.0680 2.6143 -3.4688 36 1 -0.9745 3.7344 -2.5597 37 1 0.7281 4.1540 -2.8669 38 1 3.5861 0.4917 1.9001 39 1 8.1410 1.9193 -0.3647 40 1 9.3178 0.9410 1.5592 41 1 8.0037 -0.1048 3.3916 42 1 6.7208 -1.5886 4.1919 43 1 6.6480 -0.0183 5.0270 44 1 4.3863 -0.5743 5.8770 45 1 4.4585 -2.1448 5.0423 46 1 3.2604 -2.9856 8.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611063726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:18 Heat of formation + Delta-G solvation = -96.167106 kcal Electronic energy + Delta-G solvation = -28578.935864 eV Core-core repulsion = 24468.312012 eV Total energy + Delta-G solvation = -4110.623853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22466 -41.25390 -40.09460 -39.09741 -36.47529 -36.13412 -35.45327 -33.64787 -32.90827 -32.26228 -30.74147 -30.41600 -28.05004 -27.17026 -25.02373 -24.02448 -23.23735 -22.68558 -21.63530 -21.31788 -19.82207 -19.08711 -18.60893 -18.05610 -17.61439 -17.45221 -17.17191 -16.80524 -16.69068 -16.42946 -16.10484 -15.85680 -15.27850 -15.17654 -14.97567 -14.87837 -14.36890 -14.34456 -14.15920 -13.70978 -13.54442 -13.33677 -13.31674 -13.12998 -12.91175 -12.81789 -12.72494 -12.53576 -12.45578 -11.95362 -11.90300 -11.71687 -11.64179 -11.45503 -11.36187 -10.94969 -10.59992 -10.42828 -10.34398 -10.10255 -8.89763 -8.25300 -6.37992 0.04315 0.27628 1.42497 1.43906 1.45096 1.48540 1.52972 1.68831 2.10287 2.29151 2.44320 2.85080 3.09963 3.15113 3.58274 3.77199 3.84739 3.86868 3.97567 3.99604 4.12097 4.29486 4.30215 4.32864 4.44991 4.46195 4.56959 4.67538 4.74819 4.76020 4.94619 4.97483 5.01721 5.09456 5.12479 5.20749 5.29648 5.31471 5.38356 5.50749 5.51768 5.73019 6.06308 6.08412 6.30972 6.50210 6.76914 6.80117 7.14243 7.21404 7.32120 8.87035 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.002724 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.495066 B =10275.000101 C =12518.118317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.136 3.864 4 H 0.109 0.891 5 N -0.707 5.707 6 C 0.508 3.492 7 C -0.165 4.165 8 O -0.580 6.580 9 C 0.508 3.492 10 O -0.502 6.502 11 N -0.646 5.646 12 C 0.308 3.692 13 N -0.469 5.469 14 C 0.074 3.926 15 C -0.142 4.142 16 C -0.149 4.149 17 C 0.043 3.957 18 O -0.329 6.329 19 C 0.084 3.916 20 C 0.029 3.971 21 C -0.545 4.545 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.929 5.929 25 Si 0.970 3.030 26 H -0.265 1.265 27 H -0.286 1.286 28 H -0.264 1.264 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.417 0.583 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.428 0.572 39 H 0.189 0.811 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.000 1.000 45 H 0.002 0.998 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 8.573 -20.691 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.026 3.974 4 H 0.127 0.873 5 N -0.362 5.362 6 C 0.297 3.703 7 C -0.224 4.224 8 O -0.460 6.460 9 C 0.294 3.706 10 O -0.374 6.374 11 N -0.295 5.295 12 C 0.077 3.923 13 N -0.184 5.184 14 C -0.083 4.083 15 C -0.163 4.163 16 C -0.176 4.176 17 C -0.007 4.007 18 O -0.243 6.243 19 C 0.010 3.990 20 C -0.008 4.008 21 C -0.583 4.583 22 H 0.090 0.910 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.189 1.189 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.255 0.745 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.267 0.733 39 H 0.206 0.794 40 H 0.193 0.807 41 H 0.174 0.826 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.945 9.220 -21.303 23.232 hybrid contribution 0.635 -1.049 1.950 2.303 sum 1.581 8.171 -19.353 21.067 Atomic orbital electron populations 1.21715 0.93895 1.01517 1.02238 1.21921 0.97733 0.93024 1.03900 1.20743 0.89029 0.96771 0.90821 0.87313 1.45811 1.17451 1.57466 1.15471 1.21550 0.80340 0.77138 0.91254 1.21928 1.04615 1.02522 0.93330 1.90739 1.52162 1.60344 1.42761 1.21033 0.90703 0.77532 0.81314 1.90750 1.65178 1.42340 1.39095 1.43428 1.03969 1.57953 1.24110 1.17949 0.85331 0.98715 0.90327 1.67652 1.08879 1.16558 1.25348 1.23076 0.88235 0.98030 0.98909 1.22303 1.03084 0.97791 0.93117 1.21918 0.91343 1.02144 1.02188 1.19760 0.92063 0.98869 0.90038 1.86031 1.36596 1.71624 1.30007 1.22955 0.95893 0.96472 0.83696 1.18945 0.94416 0.95011 0.92411 1.21371 0.93976 1.38507 1.04414 0.91042 1.25965 0.95651 0.96270 1.01621 1.70098 1.07450 1.45222 1.34069 0.85426 0.78153 0.78968 0.78080 1.18952 1.21124 1.18877 0.91892 0.92835 0.93281 0.89962 0.90287 0.74507 0.87017 0.88793 0.87544 0.73266 0.79444 0.80672 0.82592 0.91647 0.91811 0.98122 0.97951 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 71.98 0.61 -2.31 16 2 C -0.13 -2.58 5.55 30.60 0.17 -2.41 16 3 C 0.14 3.03 2.67 44.25 0.12 3.14 16 4 H 0.11 2.66 7.58 -2.39 -0.02 2.64 16 5 N -0.71 -13.44 4.90 -446.08 -2.19 -15.63 16 6 C 0.51 9.90 6.51 87.66 0.57 10.47 16 7 C -0.16 -1.67 10.32 71.24 0.74 -0.93 16 8 O -0.58 -16.03 14.22 -3.01 -0.04 -16.07 16 9 C 0.51 13.66 7.19 87.66 0.63 14.29 16 10 O -0.50 -15.60 14.09 -3.04 -0.04 -15.65 16 11 N -0.65 -18.38 5.25 -308.03 -1.62 -19.99 16 12 C 0.31 9.70 7.45 132.98 0.99 10.69 16 13 N -0.47 -14.26 7.87 -192.59 -1.52 -15.77 16 14 C 0.07 1.70 11.17 84.64 0.95 2.64 16 15 C -0.14 -2.87 10.10 22.36 0.23 -2.64 16 16 C -0.15 -3.85 9.14 22.53 0.21 -3.64 16 17 C 0.04 1.37 6.72 22.70 0.15 1.52 16 18 O -0.33 -11.95 9.39 -93.24 -0.88 -12.82 16 19 C 0.08 3.23 4.70 71.98 0.34 3.57 16 20 C 0.03 1.48 5.34 29.85 0.16 1.63 16 21 C -0.54 -28.94 9.11 25.60 0.23 -28.70 16 22 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 23 C 0.00 0.21 5.46 84.65 0.46 0.67 16 24 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 25 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.18 5.64 -2.39 -0.01 1.16 16 31 H 0.05 1.21 7.85 -2.38 -0.02 1.19 16 32 H 0.08 1.65 7.43 -2.39 -0.02 1.63 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.42 6.86 7.79 -92.71 -0.72 6.14 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.43 11.40 7.40 -92.71 -0.69 10.71 16 39 H 0.19 2.96 8.06 -2.92 -0.02 2.94 16 40 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.16 3.63 6.44 -2.91 -0.02 3.61 16 42 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 43 H 0.06 2.29 7.71 -2.39 -0.02 2.27 16 44 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -73.22 384.48 2.19 -71.03 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.39 Total: 27.22 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.55 Total: 7.99 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -5.04 Total: -105.63 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.96 Total: -44.54 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.22 2.19 -71.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611063726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.138 kcal (2) G-P(sol) polarization free energy of solvation -73.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds