Wall clock time and date at job start Tue Mar 31 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47280 * 2 1 4 4 C 1.50704 * 109.47297 * 119.99884 * 2 1 3 5 5 H 1.08005 * 120.00270 * 145.97297 * 4 2 1 6 6 C 1.37878 * 119.99994 * 325.69450 * 4 2 1 7 7 N 1.31511 * 119.99963 * 166.22794 * 6 4 2 8 8 Si 1.86806 * 119.99719 * 346.23312 * 6 4 2 9 9 H 1.48497 * 109.47140 * 94.87144 * 8 6 4 10 10 H 1.48507 * 109.46608 * 214.87259 * 8 6 4 11 11 H 1.48499 * 109.47233 * 334.86771 * 8 6 4 12 12 C 1.53000 * 109.47511 * 239.99780 * 2 1 3 13 13 N 1.46501 * 109.46895 * 59.99751 * 12 2 1 14 14 C 1.34777 * 119.99977 * 180.02562 * 13 12 2 15 15 O 1.21278 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99836 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46755 * 179.97438 * 16 14 13 18 18 N 1.46501 * 109.46895 * 179.97438 * 17 16 14 19 19 C 1.34748 * 120.00108 * 180.02562 * 18 17 16 20 20 O 1.34275 * 119.99782 * 359.97438 * 19 18 17 21 21 C 1.41524 * 119.99903 * 180.02562 * 19 18 17 22 22 N 1.33549 * 120.01979 * 5.19400 * 21 19 18 23 23 C 1.30902 * 121.62843 * 179.70207 * 22 21 19 24 24 C 1.39488 * 121.49677 * 0.58432 * 23 22 21 25 25 C 1.36516 * 119.85449 * 359.71306 * 24 23 22 26 26 C 1.40983 * 118.46851 * 359.97438 * 25 24 23 27 27 O 1.22439 * 120.70812 * 179.97438 * 26 25 24 28 28 H 1.08992 * 109.47081 * 317.66665 * 1 2 3 29 29 H 1.08999 * 109.47009 * 77.67365 * 1 2 3 30 30 H 1.09009 * 109.46790 * 197.67121 * 1 2 3 31 31 H 1.08994 * 109.47190 * 187.87408 * 3 2 1 32 32 H 1.08999 * 109.46401 * 307.87520 * 3 2 1 33 33 H 1.08995 * 109.46725 * 67.87056 * 3 2 1 34 34 H 0.97010 * 119.99368 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47432 * 180.02562 * 12 2 1 36 36 H 1.09003 * 109.47004 * 300.00046 * 12 2 1 37 37 H 0.97004 * 120.00063 * 0.02562 * 13 12 2 38 38 H 1.08995 * 109.46953 * 300.00006 * 16 14 13 39 39 H 1.09003 * 109.47141 * 60.00024 * 16 14 13 40 40 H 1.08995 * 109.47669 * 299.99903 * 17 16 14 41 41 H 1.09003 * 109.47004 * 60.00274 * 17 16 14 42 42 H 0.96997 * 120.00312 * 0.02562 * 18 17 16 43 43 H 0.96704 * 116.99519 * 93.69437 * 20 19 18 44 44 H 1.08011 * 119.25052 * 180.29239 * 23 22 21 45 45 H 1.08003 * 120.07493 * 179.68851 * 24 23 22 46 46 H 1.08002 * 120.76693 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.9432 -1.2890 1.1860 6 6 1.3322 -0.6169 2.4146 7 7 1.6044 -1.4372 3.4059 8 14 -0.0029 0.6748 2.6107 9 1 -1.3224 0.0760 2.2859 10 1 -0.0139 1.1665 4.0120 11 1 0.2662 1.8086 1.6904 12 6 2.0401 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4915 -3.6695 15 8 2.5742 -1.4775 -3.7807 16 6 1.3750 0.2192 -4.9000 17 6 1.8850 -0.5021 -6.1491 18 7 1.3966 0.1884 -7.3453 19 6 1.7216 -0.2723 -8.5692 20 8 2.4936 -1.3640 -8.6923 21 6 1.2503 0.3951 -9.7247 22 7 0.5710 1.5388 -9.6054 23 6 0.1256 2.1851 -10.6529 24 6 0.3285 1.7043 -11.9465 25 6 1.0103 0.5374 -12.1386 26 6 1.4940 -0.1523 -11.0081 27 8 2.1104 -1.2028 -11.1330 28 1 -0.3633 0.7596 0.6920 29 1 -0.3633 0.2194 -1.0040 30 1 -0.3633 -0.9793 0.3120 31 1 3.1208 1.4457 -0.1408 32 1 1.5662 1.9953 -0.8112 33 1 1.7961 1.9140 0.9519 34 1 1.1115 -1.3716 4.2389 35 1 3.1301 -0.7217 -1.2489 36 1 1.6767 -1.7490 -1.2491 37 1 0.9943 0.7582 -2.3564 38 1 0.2851 0.2200 -4.8999 39 1 1.7391 1.2467 -4.9000 40 1 2.9749 -0.5025 -6.1490 41 1 1.5213 -1.5297 -6.1493 42 1 0.8392 0.9772 -7.2564 43 1 2.0410 -2.2133 -8.7874 44 1 -0.4153 3.1094 -10.5121 45 1 -0.0534 2.2538 -12.7942 46 1 1.1762 0.1518 -13.1338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626124420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:24 Heat of formation + Delta-G solvation = -45.855377 kcal Electronic energy + Delta-G solvation = -27851.394474 eV Core-core repulsion = 23742.952302 eV Total energy + Delta-G solvation = -4108.442172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17273 -39.91944 -39.23815 -37.34551 -37.00397 -36.24476 -33.55936 -33.06290 -31.79203 -31.33105 -29.61261 -26.80717 -26.50817 -25.54417 -24.95764 -23.71376 -22.49872 -22.41733 -20.43704 -19.37372 -19.06493 -18.45963 -17.35336 -17.01664 -16.44528 -16.32097 -16.15584 -15.75734 -15.59989 -15.38632 -15.05635 -14.71037 -14.56390 -14.27481 -13.60178 -13.49271 -13.32006 -13.13737 -12.81446 -12.73198 -12.61665 -12.54933 -12.34222 -12.27808 -12.19443 -12.08507 -11.36275 -11.14560 -10.71510 -10.62126 -10.48491 -10.32962 -10.15153 -9.87156 -9.84860 -9.25572 -9.04910 -8.84839 -8.77023 -8.57259 -7.67603 -6.25135 -4.22530 -0.29192 1.53150 1.97569 2.07268 2.60522 3.06752 3.15781 3.19732 3.31073 3.44917 3.86788 3.96747 4.17766 4.24917 4.42572 4.60411 4.66730 4.82265 4.96372 4.96656 5.00685 5.04201 5.16635 5.23096 5.46851 5.63479 5.66590 5.84484 5.94555 5.99831 6.06371 6.19525 6.27172 6.31333 6.37440 6.39694 6.45326 6.54089 6.57947 6.80804 6.93446 7.06775 7.30491 7.59639 7.63941 7.69189 7.96793 8.24849 8.35606 8.80283 9.38600 10.87913 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029214 B = 0.001818 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.214593 B =15395.449882 C =16081.176166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.030 3.970 3 C -0.143 4.143 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.289 1.289 10 H -0.305 1.305 11 H -0.254 1.254 12 C 0.139 3.861 13 N -0.718 5.718 14 C 0.511 3.489 15 O -0.545 6.545 16 C -0.159 4.159 17 C 0.103 3.897 18 N -0.647 5.647 19 C 0.556 3.444 20 O -0.467 6.467 21 C -0.199 4.199 22 N -0.418 5.418 23 C 0.039 3.961 24 C -0.085 4.085 25 C -0.215 4.215 26 C 0.372 3.628 27 O -0.532 6.532 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.435 0.565 43 H 0.435 0.565 44 H 0.153 0.847 45 H 0.128 0.872 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 8.070 -24.256 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.234 1.234 11 H -0.181 1.181 12 C 0.017 3.983 13 N -0.368 5.368 14 C 0.295 3.705 15 O -0.423 6.423 16 C -0.200 4.200 17 C -0.019 4.019 18 N -0.271 5.271 19 C 0.377 3.623 20 O -0.279 6.279 21 C -0.324 4.324 22 N -0.129 5.129 23 C -0.144 4.144 24 C -0.105 4.105 25 C -0.243 4.243 26 C 0.267 3.733 27 O -0.422 6.422 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.233 0.767 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.276 0.724 43 H 0.304 0.696 44 H 0.171 0.829 45 H 0.146 0.854 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.600 7.078 -22.961 24.463 hybrid contribution -1.537 0.935 -0.551 1.882 sum -6.137 8.012 -23.511 25.586 Atomic orbital electron populations 1.22465 0.98339 1.01906 0.99246 1.18717 0.91724 0.92872 0.93857 1.22247 1.00081 0.97899 0.99843 1.20701 1.11219 1.31439 0.91980 0.90565 1.25017 0.96694 0.95102 0.95949 1.69951 1.41945 1.35257 1.05316 0.87084 0.81837 0.83247 0.75140 1.21591 1.23419 1.18108 1.21643 0.98682 0.96073 0.81892 1.46354 1.52559 1.31751 1.06157 1.20019 0.81092 0.84865 0.84559 1.90743 1.38291 1.26461 1.86837 1.21837 1.03618 1.01666 0.92833 1.21725 1.01869 0.96947 0.81374 1.45635 1.45982 1.30703 1.04824 1.19442 0.75069 0.83823 0.83919 1.83799 1.34045 1.16716 1.93361 1.19453 1.18759 1.01778 0.92402 1.66910 1.05420 1.05108 1.35427 1.22245 1.03821 1.00696 0.87609 1.22035 0.94644 0.95239 0.98614 1.22853 1.02899 0.97968 1.00557 1.17429 0.80541 0.86605 0.88762 1.90818 1.38973 1.23296 1.89145 0.93335 0.94534 0.91906 0.93548 0.96132 0.92442 0.92473 0.91891 0.91568 0.76714 0.87811 0.87730 0.88158 0.88629 0.72351 0.69552 0.82941 0.85430 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 6.82 37.16 0.25 -2.81 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.14 -2.59 7.78 37.16 0.29 -2.31 16 4 C -0.52 -13.13 8.54 -34.44 -0.29 -13.42 16 5 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 6 C 0.08 2.01 5.27 -17.82 -0.09 1.92 16 7 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 8 Si 0.89 20.22 22.79 -169.99 -3.87 16.35 16 9 H -0.29 -6.45 7.09 56.52 0.40 -6.05 16 10 H -0.31 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.25 -5.21 4.47 56.52 0.25 -4.96 16 12 C 0.14 2.50 4.54 -4.04 -0.02 2.48 16 13 N -0.72 -9.53 4.81 -60.29 -0.29 -9.82 16 14 C 0.51 6.23 7.83 -10.98 -0.09 6.15 16 15 O -0.55 -8.89 15.98 5.56 0.09 -8.80 16 16 C -0.16 -1.05 5.81 -27.88 -0.16 -1.21 16 17 C 0.10 0.69 4.97 -4.04 -0.02 0.67 16 18 N -0.65 -3.91 5.53 -60.41 -0.33 -4.24 16 19 C 0.56 4.71 7.70 -15.02 -0.12 4.60 16 20 O -0.47 -3.87 10.68 -36.97 -0.39 -4.27 16 21 C -0.20 -2.15 6.61 -84.57 -0.56 -2.71 16 22 N -0.42 -4.04 9.41 -10.77 -0.10 -4.14 16 23 C 0.04 0.32 11.16 -17.48 -0.20 0.13 16 24 C -0.08 -0.68 10.04 -39.74 -0.40 -1.07 16 25 C -0.22 -2.27 10.09 -39.16 -0.40 -2.67 16 26 C 0.37 4.76 6.73 -37.24 -0.25 4.51 16 27 O -0.53 -8.08 15.82 -17.77 -0.28 -8.36 16 28 H 0.05 0.95 2.80 -51.93 -0.15 0.80 16 29 H 0.04 0.54 6.55 -51.93 -0.34 0.20 16 30 H 0.06 1.28 7.60 -51.92 -0.39 0.89 16 31 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 32 H 0.02 0.30 7.09 -51.93 -0.37 -0.07 16 33 H 0.06 1.13 5.20 -51.93 -0.27 0.86 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.40 4.36 6.32 -40.82 -0.26 4.11 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.43 2.20 7.68 -40.82 -0.31 1.89 16 43 H 0.44 1.91 9.05 45.56 0.41 2.32 16 44 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 46 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -35.25 371.78 -6.54 -41.79 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.61 Total: 6.02 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.13 Total: -5.23 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.05 Total: -43.10 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.59 Total: -21.43 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -3.87 Total: 16.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.25 -6.54 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626124420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.063 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds