Wall clock time and date at job start Tue Mar 31 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47360 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00331 * 2 1 3 5 5 H 1.08001 * 119.99993 * 236.96729 * 4 2 1 6 6 C 1.37875 * 120.00098 * 56.96619 * 4 2 1 7 7 N 1.31509 * 120.00075 * 4.03292 * 6 4 2 8 8 Si 1.86798 * 119.99946 * 184.03019 * 6 4 2 9 9 H 1.48508 * 109.46939 * 94.94241 * 8 6 4 10 10 H 1.48499 * 109.47123 * 214.94223 * 8 6 4 11 11 H 1.48497 * 109.47208 * 334.94532 * 8 6 4 12 12 C 1.53007 * 109.47211 * 120.00600 * 2 1 3 13 13 N 1.46498 * 109.46853 * 299.99607 * 12 2 1 14 14 C 1.34778 * 119.99906 * 180.02562 * 13 12 2 15 15 O 1.21273 * 119.99780 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99745 * 179.72306 * 14 13 12 17 17 C 1.53002 * 109.47005 * 180.26953 * 16 14 13 18 18 N 1.46505 * 109.47312 * 179.97438 * 17 16 14 19 19 C 1.34748 * 119.99870 * 180.02562 * 18 17 16 20 20 O 1.34270 * 119.99943 * 5.64111 * 19 18 17 21 21 C 1.41519 * 119.99790 * 185.64274 * 19 18 17 22 22 N 1.33544 * 120.01906 * 188.65097 * 21 19 18 23 23 C 1.30899 * 121.63726 * 179.97438 * 22 21 19 24 24 C 1.39500 * 121.49224 * 0.02562 * 23 22 21 25 25 C 1.36520 * 119.85452 * 359.97438 * 24 23 22 26 26 C 1.40996 * 118.46639 * 359.74375 * 25 24 23 27 27 O 1.22428 * 120.70248 * 180.26477 * 26 25 24 28 28 H 1.09010 * 109.47070 * 290.78657 * 1 2 3 29 29 H 1.09006 * 109.47119 * 50.77823 * 1 2 3 30 30 H 1.09000 * 109.47782 * 170.78791 * 1 2 3 31 31 H 1.09003 * 109.47185 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47776 * 300.00583 * 3 2 1 33 33 H 1.09004 * 109.46739 * 60.00860 * 3 2 1 34 34 H 0.96998 * 120.00475 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46758 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.46875 * 59.99296 * 12 2 1 37 37 H 0.97002 * 120.00015 * 0.02562 * 13 12 2 38 38 H 1.08994 * 109.47779 * 300.27063 * 16 14 13 39 39 H 1.09004 * 109.47371 * 60.27431 * 16 14 13 40 40 H 1.08995 * 109.47368 * 300.00299 * 17 16 14 41 41 H 1.09004 * 109.46665 * 60.00046 * 17 16 14 42 42 H 0.97002 * 119.99811 * 0.02562 * 18 17 16 43 43 H 0.96701 * 116.99885 * 179.97438 * 20 19 18 44 44 H 1.07999 * 119.25755 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.07678 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.76433 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6929 -1.5591 -1.1323 6 6 1.6483 -0.2768 -2.4818 7 7 0.9086 0.8035 -2.6051 8 14 2.1788 -1.2240 -4.0019 9 1 1.1074 -2.1761 -4.3908 10 1 2.4252 -0.2739 -5.1162 11 1 3.4253 -1.9752 -3.7071 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6695 15 8 2.5749 -1.4771 3.7806 16 6 1.3806 0.2229 4.8999 17 6 1.8956 -0.4949 6.1491 18 7 1.4128 0.1996 7.3454 19 6 1.7438 -0.2571 8.5691 20 8 2.6065 -1.2784 8.6939 21 6 1.1822 0.3398 9.7228 22 7 1.6356 0.0085 10.9345 23 6 1.1396 0.5411 12.0225 24 6 0.1111 1.4821 11.9697 25 6 -0.3983 1.8651 10.7624 26 6 0.1429 1.2934 9.5927 27 8 -0.2797 1.6109 8.4885 28 1 -0.3634 0.3647 0.9609 29 1 -0.3634 0.6499 -0.7962 30 1 -0.3635 -1.0144 -0.1645 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.6768 1.9562 0.8901 34 1 0.6382 1.1083 -3.4853 35 1 3.1300 -0.7218 1.2489 36 1 1.6765 -1.7490 1.2491 37 1 0.9938 0.7576 2.3564 38 1 1.7441 1.2505 4.8956 39 1 0.2906 0.2231 4.9045 40 1 1.5321 -1.5224 6.1535 41 1 2.9856 -0.4951 6.1446 42 1 0.8549 0.9881 7.2564 43 1 2.8136 -1.5709 9.5921 44 1 1.5356 0.2455 12.9828 45 1 -0.2814 1.9066 12.8819 46 1 -1.1949 2.5921 10.7045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626124421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:26 Heat of formation + Delta-G solvation = -67.666858 kcal Electronic energy + Delta-G solvation = -27918.303682 eV Core-core repulsion = 23808.915693 eV Total energy + Delta-G solvation = -4109.387989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38159 -39.71654 -39.27366 -37.60879 -36.68267 -36.16069 -33.42028 -32.86019 -31.75669 -30.84219 -29.56619 -26.41310 -25.80618 -25.48701 -24.78602 -23.35024 -22.93229 -22.66159 -20.24934 -19.13341 -18.88195 -18.25152 -17.16391 -16.87999 -16.59972 -16.43283 -15.85859 -15.68132 -15.49606 -15.32523 -14.95715 -14.60552 -14.55962 -14.08935 -13.71412 -13.33074 -13.09980 -12.99461 -12.94019 -12.72649 -12.56779 -12.36888 -12.25658 -12.02683 -11.47627 -11.26573 -10.92479 -10.83306 -10.73035 -10.72301 -10.45760 -10.28330 -9.81384 -9.79103 -9.70157 -9.37038 -9.15799 -8.85049 -8.58689 -8.40785 -7.75060 -6.08183 -4.17306 -0.01227 1.63249 1.84525 1.97395 2.79895 2.97406 3.24370 3.32184 3.35406 3.62308 3.82276 3.90300 4.25730 4.35699 4.57818 4.63432 4.81862 4.87054 4.92254 4.99408 5.19294 5.19706 5.37982 5.40784 5.45933 5.81759 5.98835 6.05762 6.11440 6.22506 6.23734 6.34734 6.42467 6.66402 6.73631 6.82641 6.89170 6.93433 6.99373 7.27185 7.48629 7.63910 7.64281 7.86621 7.90081 7.92052 8.05729 8.30094 8.48180 8.83011 9.48586 10.94161 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.001789 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.745499 B =15646.796494 C =16280.706545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.712 5.712 14 C 0.511 3.489 15 O -0.552 6.552 16 C -0.159 4.159 17 C 0.104 3.896 18 N -0.613 5.613 19 C 0.567 3.433 20 O -0.458 6.458 21 C -0.235 4.235 22 N -0.415 5.415 23 C 0.026 3.974 24 C -0.079 4.079 25 C -0.219 4.219 26 C 0.368 3.632 27 O -0.565 6.565 28 H 0.006 0.994 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.400 0.600 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.445 0.555 43 H 0.448 0.552 44 H 0.153 0.847 45 H 0.128 0.872 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 1.153 25.804 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.295 3.705 15 O -0.431 6.431 16 C -0.200 4.200 17 C -0.019 4.019 18 N -0.256 5.256 19 C 0.378 3.622 20 O -0.257 6.257 21 C -0.361 4.361 22 N -0.125 5.125 23 C -0.154 4.154 24 C -0.100 4.100 25 C -0.246 4.246 26 C 0.270 3.730 27 O -0.460 6.460 28 H 0.025 0.975 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.304 0.696 43 H 0.311 0.689 44 H 0.171 0.829 45 H 0.146 0.854 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.885 -0.011 24.268 24.284 hybrid contribution -0.812 0.684 -0.147 1.071 sum 0.073 0.672 24.122 24.131 Atomic orbital electron populations 1.21818 0.97588 1.00728 0.98470 1.18379 0.92874 0.92749 0.90601 1.21845 0.98604 0.98301 1.00032 1.20964 1.29415 1.14443 0.89883 0.92406 1.24881 0.94915 0.94804 0.98868 1.69828 1.36823 1.22307 1.23338 0.86558 0.78978 0.79762 0.82582 1.20739 1.21258 1.19877 1.21755 0.98227 0.95889 0.83248 1.46324 1.52209 1.31745 1.05949 1.20020 0.81008 0.84816 0.84643 1.90707 1.38716 1.26712 1.86953 1.21822 1.03970 1.01550 0.92640 1.21747 1.01533 0.97138 0.81477 1.46063 1.46919 1.30056 1.02548 1.19340 0.77778 0.79138 0.85916 1.83850 1.56121 1.44971 1.40767 1.19332 1.11412 1.14957 0.90383 1.66682 1.25444 1.22629 0.97747 1.22107 0.98440 0.99299 0.95532 1.21995 0.94705 0.94893 0.98416 1.22638 1.03886 1.04516 0.93559 1.17369 0.83362 0.82191 0.90054 1.90413 1.63356 1.64111 1.28136 0.97519 0.90022 0.95034 0.95415 0.89677 0.97525 0.92980 0.92539 0.92500 0.76426 0.87782 0.87590 0.88428 0.88418 0.69587 0.68909 0.82938 0.85407 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.03 37.15 0.30 -2.48 16 2 C 0.05 1.21 0.50 -155.66 -0.08 1.13 16 3 C -0.13 -2.80 8.09 37.16 0.30 -2.50 16 4 C -0.51 -12.95 7.99 -34.44 -0.28 -13.22 16 5 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 6 C 0.07 1.73 5.14 -17.82 -0.09 1.64 16 7 N -0.88 -23.13 9.49 55.43 0.53 -22.61 16 8 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.13 2.61 4.50 -4.04 -0.02 2.59 16 13 N -0.71 -11.30 4.87 -60.30 -0.29 -11.59 16 14 C 0.51 7.46 7.83 -10.99 -0.09 7.37 16 15 O -0.55 -9.99 15.98 5.56 0.09 -9.90 16 16 C -0.16 -1.54 5.81 -27.88 -0.16 -1.70 16 17 C 0.10 0.97 4.97 -4.04 -0.02 0.95 16 18 N -0.61 -5.64 5.32 -60.40 -0.32 -5.96 16 19 C 0.57 5.18 7.81 -15.02 -0.12 5.06 16 20 O -0.46 -3.11 12.69 -14.67 -0.19 -3.30 16 21 C -0.24 -2.53 6.61 -84.57 -0.56 -3.09 16 22 N -0.41 -3.92 9.32 -10.77 -0.10 -4.02 16 23 C 0.03 0.21 11.17 -17.48 -0.20 0.02 16 24 C -0.08 -0.64 10.04 -39.73 -0.40 -1.04 16 25 C -0.22 -2.33 10.09 -39.16 -0.40 -2.73 16 26 C 0.37 4.65 6.72 -37.24 -0.25 4.40 16 27 O -0.56 -8.12 14.41 4.52 0.07 -8.06 16 28 H 0.01 0.11 6.65 -51.92 -0.35 -0.24 16 29 H 0.08 1.95 6.29 -51.93 -0.33 1.63 16 30 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 2.06 6.16 -51.93 -0.32 1.74 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.40 5.69 6.17 -40.82 -0.25 5.44 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 41 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.45 4.53 5.09 -40.95 -0.21 4.32 16 43 H 0.45 1.60 8.11 45.56 0.37 1.97 16 44 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -31.53 378.86 -7.21 -38.73 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.63 Total: 9.25 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.05 Total: -3.61 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.19 Total: -44.18 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.03 Total: -21.26 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.53 -7.21 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626124421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.934 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds