Wall clock time and date at job start Tue Mar 31 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47360 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00331 * 2 1 3 5 5 H 1.08001 * 119.99993 * 236.96729 * 4 2 1 6 6 C 1.37875 * 120.00098 * 56.96619 * 4 2 1 7 7 N 1.31509 * 120.00075 * 4.03292 * 6 4 2 8 8 Si 1.86798 * 119.99946 * 184.03019 * 6 4 2 9 9 H 1.48508 * 109.46939 * 94.94241 * 8 6 4 10 10 H 1.48499 * 109.47123 * 214.94223 * 8 6 4 11 11 H 1.48497 * 109.47208 * 334.94532 * 8 6 4 12 12 C 1.53007 * 109.47211 * 120.00600 * 2 1 3 13 13 N 1.46498 * 109.46853 * 299.99607 * 12 2 1 14 14 C 1.34778 * 119.99906 * 180.02562 * 13 12 2 15 15 O 1.21273 * 119.99780 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99745 * 179.72306 * 14 13 12 17 17 C 1.53002 * 109.47005 * 180.26953 * 16 14 13 18 18 N 1.46505 * 109.47312 * 179.97438 * 17 16 14 19 19 C 1.34748 * 119.99870 * 180.02562 * 18 17 16 20 20 O 1.34270 * 119.99943 * 5.64111 * 19 18 17 21 21 C 1.41519 * 119.99790 * 185.64274 * 19 18 17 22 22 N 1.33544 * 120.01906 * 188.65097 * 21 19 18 23 23 C 1.30899 * 121.63726 * 179.97438 * 22 21 19 24 24 C 1.39500 * 121.49224 * 0.02562 * 23 22 21 25 25 C 1.36520 * 119.85452 * 359.97438 * 24 23 22 26 26 C 1.40996 * 118.46639 * 359.74375 * 25 24 23 27 27 O 1.22428 * 120.70248 * 180.26477 * 26 25 24 28 28 H 1.09010 * 109.47070 * 290.78657 * 1 2 3 29 29 H 1.09006 * 109.47119 * 50.77823 * 1 2 3 30 30 H 1.09000 * 109.47782 * 170.78791 * 1 2 3 31 31 H 1.09003 * 109.47185 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47776 * 300.00583 * 3 2 1 33 33 H 1.09004 * 109.46739 * 60.00860 * 3 2 1 34 34 H 0.96998 * 120.00475 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46758 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.46875 * 59.99296 * 12 2 1 37 37 H 0.97002 * 120.00015 * 0.02562 * 13 12 2 38 38 H 1.08994 * 109.47779 * 300.27063 * 16 14 13 39 39 H 1.09004 * 109.47371 * 60.27431 * 16 14 13 40 40 H 1.08995 * 109.47368 * 300.00299 * 17 16 14 41 41 H 1.09004 * 109.46665 * 60.00046 * 17 16 14 42 42 H 0.97002 * 119.99811 * 0.02562 * 18 17 16 43 43 H 0.96701 * 116.99885 * 179.97438 * 20 19 18 44 44 H 1.07999 * 119.25755 * 180.02562 * 23 22 21 45 45 H 1.07998 * 120.07678 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.76433 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6929 -1.5591 -1.1323 6 6 1.6483 -0.2768 -2.4818 7 7 0.9086 0.8035 -2.6051 8 14 2.1788 -1.2240 -4.0019 9 1 1.1074 -2.1761 -4.3908 10 1 2.4252 -0.2739 -5.1162 11 1 3.4253 -1.9752 -3.7071 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6695 15 8 2.5749 -1.4771 3.7806 16 6 1.3806 0.2229 4.8999 17 6 1.8956 -0.4949 6.1491 18 7 1.4128 0.1996 7.3454 19 6 1.7438 -0.2571 8.5691 20 8 2.6065 -1.2784 8.6939 21 6 1.1822 0.3398 9.7228 22 7 1.6356 0.0085 10.9345 23 6 1.1396 0.5411 12.0225 24 6 0.1111 1.4821 11.9697 25 6 -0.3983 1.8651 10.7624 26 6 0.1429 1.2934 9.5927 27 8 -0.2797 1.6109 8.4885 28 1 -0.3634 0.3647 0.9609 29 1 -0.3634 0.6499 -0.7962 30 1 -0.3635 -1.0144 -0.1645 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.6768 1.9562 0.8901 34 1 0.6382 1.1083 -3.4853 35 1 3.1300 -0.7218 1.2489 36 1 1.6765 -1.7490 1.2491 37 1 0.9938 0.7576 2.3564 38 1 1.7441 1.2505 4.8956 39 1 0.2906 0.2231 4.9045 40 1 1.5321 -1.5224 6.1535 41 1 2.9856 -0.4951 6.1446 42 1 0.8549 0.9881 7.2564 43 1 2.8136 -1.5709 9.5921 44 1 1.5356 0.2455 12.9828 45 1 -0.2814 1.9066 12.8819 46 1 -1.1949 2.5921 10.7045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626124421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:25 Heat of formation + Delta-G solvation = -91.398626 kcal Electronic energy + Delta-G solvation = -27919.332769 eV Core-core repulsion = 23808.915693 eV Total energy + Delta-G solvation = -4110.417076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09452 -40.89318 -40.03178 -38.43624 -38.13219 -37.04216 -35.00996 -33.62285 -32.91053 -32.22399 -30.36354 -27.66743 -27.56658 -27.17829 -26.00748 -24.18807 -23.72754 -23.36974 -21.46732 -20.60613 -19.77670 -19.10306 -18.10209 -17.90887 -17.56649 -17.38244 -17.17159 -16.77700 -16.56936 -16.34649 -16.16940 -15.81665 -15.53304 -15.05949 -14.84108 -14.67817 -14.32055 -14.27279 -13.98613 -13.85253 -13.42505 -13.33123 -13.25816 -13.17089 -13.05848 -12.84582 -12.67230 -12.59484 -12.23601 -12.15905 -11.57543 -11.48073 -11.42212 -11.29269 -10.93328 -10.68556 -10.50633 -10.41199 -9.95054 -9.92898 -8.53434 -8.03817 -6.18027 -0.71010 0.92903 1.14181 1.22407 1.41044 1.44828 1.52511 1.63340 2.18692 2.44477 2.62521 3.09485 3.16919 3.20796 3.45761 3.85173 3.89462 3.91019 4.19256 4.23624 4.36713 4.39301 4.45755 4.51286 4.64937 4.68316 4.72846 4.78221 5.00834 5.05470 5.09761 5.13617 5.19099 5.34570 5.35783 5.38104 5.56082 5.58513 5.67268 5.68243 5.74959 6.13831 6.21129 6.35870 6.42027 6.62568 6.86676 6.91891 7.11132 7.26951 7.49504 8.95823 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.001789 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.745499 B =15646.796494 C =16280.706545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.048 3.952 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.148 3.852 13 N -0.710 5.710 14 C 0.513 3.487 15 O -0.588 6.588 16 C -0.147 4.147 17 C 0.110 3.890 18 N -0.610 5.610 19 C 0.572 3.428 20 O -0.450 6.450 21 C -0.248 4.248 22 N -0.418 5.418 23 C 0.024 3.976 24 C -0.062 4.062 25 C -0.252 4.252 26 C 0.344 3.656 27 O -0.600 6.600 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.259 0.741 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.411 0.589 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.443 0.557 43 H 0.460 0.540 44 H 0.188 0.812 45 H 0.163 0.837 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 1.372 28.265 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.048 3.952 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.024 3.976 13 N -0.361 5.361 14 C 0.299 3.701 15 O -0.469 6.469 16 C -0.187 4.187 17 C -0.013 4.013 18 N -0.253 5.253 19 C 0.382 3.618 20 O -0.251 6.251 21 C -0.372 4.372 22 N -0.129 5.129 23 C -0.156 4.156 24 C -0.082 4.082 25 C -0.279 4.279 26 C 0.249 3.751 27 O -0.499 6.499 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.248 0.752 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.301 0.699 43 H 0.326 0.674 44 H 0.205 0.795 45 H 0.181 0.819 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.971 0.206 26.776 26.794 hybrid contribution -0.788 0.568 -0.773 1.241 sum 0.183 0.774 26.003 26.015 Atomic orbital electron populations 1.21655 0.97038 0.99426 0.99449 1.18387 0.93260 0.93077 0.90514 1.21676 0.97966 0.97788 1.00354 1.21278 1.29364 1.14417 0.91613 0.93688 1.25452 0.95252 0.95579 1.00957 1.69935 1.37297 1.22910 1.23593 0.85777 0.78450 0.78706 0.80052 1.20616 1.21000 1.20010 1.21246 0.97122 0.95125 0.84122 1.46141 1.52617 1.31994 1.05349 1.20748 0.79826 0.84219 0.85276 1.90696 1.40258 1.28472 1.87468 1.21762 1.05078 1.01993 0.89844 1.21634 1.01377 0.96816 0.81428 1.45944 1.46841 1.29950 1.02524 1.19243 0.77727 0.79261 0.85528 1.83868 1.55167 1.43982 1.42058 1.19406 1.11402 1.15028 0.91386 1.66779 1.25568 1.22899 0.97630 1.22825 0.97859 0.98426 0.96491 1.22381 0.93506 0.93580 0.98773 1.22758 1.05149 1.05846 0.94193 1.17809 0.84108 0.82875 0.90324 1.90376 1.64769 1.65659 1.29057 0.94117 0.92332 0.96425 0.96231 0.92278 0.94179 0.93111 0.94100 0.94146 0.75166 0.85251 0.85572 0.88934 0.88564 0.69867 0.67374 0.79474 0.81917 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 8.03 71.98 0.58 -4.46 16 2 C 0.05 2.14 0.50 -52.93 -0.03 2.11 16 3 C -0.12 -5.10 8.09 71.98 0.58 -4.52 16 4 C -0.53 -27.28 7.99 25.60 0.20 -27.08 16 5 H 0.04 2.37 7.75 -2.91 -0.02 2.35 16 6 C 0.03 1.43 5.14 84.65 0.44 1.87 16 7 N -0.90 -47.38 9.49 21.45 0.20 -47.18 16 8 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 C 0.15 5.86 4.50 86.38 0.39 6.25 16 13 N -0.71 -21.41 4.87 -463.07 -2.26 -23.67 16 14 C 0.51 14.18 7.83 87.66 0.69 14.86 16 15 O -0.59 -20.93 15.98 -3.01 -0.05 -20.98 16 16 C -0.15 -2.49 5.81 29.85 0.17 -2.32 16 17 C 0.11 1.88 4.97 86.38 0.43 2.31 16 18 N -0.61 -10.50 5.32 -457.35 -2.44 -12.93 16 19 C 0.57 9.80 7.81 85.05 0.66 10.46 16 20 O -0.45 -5.42 12.69 -75.41 -0.96 -6.37 16 21 C -0.25 -5.08 6.61 40.53 0.27 -4.81 16 22 N -0.42 -7.08 9.32 -188.00 -1.75 -8.83 16 23 C 0.02 0.31 11.17 85.14 0.95 1.27 16 24 C -0.06 -0.85 10.04 22.17 0.22 -0.63 16 25 C -0.25 -5.21 10.09 22.54 0.23 -4.99 16 26 C 0.34 8.63 6.72 23.79 0.16 8.79 16 27 O -0.60 -17.46 14.41 -6.73 -0.10 -17.55 16 28 H 0.04 1.41 6.65 -2.38 -0.02 1.40 16 29 H 0.06 2.79 6.29 -2.38 -0.02 2.77 16 30 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 2.84 6.16 -2.39 -0.01 2.83 16 33 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 34 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.41 10.59 6.17 -92.71 -0.57 10.02 16 38 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.10 1.70 8.10 -2.39 -0.02 1.68 16 42 H 0.44 8.62 5.09 -94.80 -0.48 8.14 16 43 H 0.46 2.48 8.11 -74.06 -0.60 1.88 16 44 H 0.19 1.11 8.06 -2.91 -0.02 1.08 16 45 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -69.80 378.86 0.01 -69.78 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: -0.61 Total: 24.44 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.94 Total: -0.88 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -6.24 Total: -92.61 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.10 Total: -44.91 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.80 0.01 -69.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626124421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.614 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds