Wall clock time and date at job start Tue Mar 31 2020 19:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47473 * 2 1 4 4 H 1.08998 * 109.47206 * 305.00329 * 3 2 1 5 5 C 1.52995 * 109.47531 * 184.99973 * 3 2 1 6 6 N 1.46505 * 109.47162 * 185.00106 * 5 3 2 7 7 C 1.34773 * 119.99862 * 180.02562 * 6 5 3 8 8 O 1.21362 * 120.00184 * 359.97438 * 7 6 5 9 9 C 1.49332 * 120.00053 * 180.02562 * 7 6 5 10 10 O 1.21385 * 119.99931 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00516 * 179.97438 * 9 7 6 12 12 C 1.39861 * 120.00274 * 175.38144 * 11 9 7 13 13 C 1.38922 * 120.02025 * 214.82519 * 12 11 9 14 14 C 1.38060 * 119.97815 * 179.79005 * 13 12 11 15 15 C 1.38744 * 120.01977 * 0.49132 * 14 13 12 16 16 O 1.35960 * 119.98041 * 179.72099 * 15 14 13 17 17 C 1.42898 * 116.99716 * 0.02562 * 16 15 14 18 18 C 1.38748 * 120.04306 * 359.73867 * 15 14 13 19 19 C 1.38057 * 120.01923 * 0.02837 * 18 15 14 20 20 N 1.46506 * 109.46964 * 65.00047 * 3 2 1 21 21 C 1.36936 * 119.99850 * 275.00291 * 20 3 2 22 22 H 1.07999 * 120.00076 * 359.97438 * 21 20 3 23 23 C 1.38817 * 119.99813 * 180.02562 * 21 20 3 24 24 N 1.31613 * 119.99934 * 359.72344 * 23 21 20 25 25 Si 1.86797 * 119.99768 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.47076 * 269.71951 * 25 23 21 27 27 H 1.48496 * 109.47401 * 29.72110 * 25 23 21 28 28 H 1.48499 * 109.47065 * 149.72657 * 25 23 21 29 29 H 1.09001 * 109.47143 * 59.99422 * 1 2 3 30 30 H 1.09000 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.47037 * 300.00096 * 1 2 3 32 32 H 1.09003 * 109.47516 * 240.00287 * 2 1 3 33 33 H 1.09002 * 109.47441 * 119.99860 * 2 1 3 34 34 H 1.08996 * 109.47145 * 305.00052 * 5 3 2 35 35 H 1.08997 * 109.47403 * 65.00228 * 5 3 2 36 36 H 0.96995 * 120.00241 * 0.02562 * 6 5 3 37 37 H 0.97004 * 119.99585 * 355.38711 * 11 9 7 38 38 H 1.08001 * 120.01010 * 0.02562 * 13 12 11 39 39 H 1.07999 * 119.98550 * 180.23111 * 14 13 12 40 40 H 1.08993 * 109.47011 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47139 * 299.99916 * 17 16 15 42 42 H 1.08996 * 109.47266 * 59.99778 * 17 16 15 43 43 H 1.08001 * 119.99178 * 179.97438 * 18 15 14 44 44 H 1.08003 * 120.01240 * 179.97438 * 19 18 15 45 45 H 0.96998 * 120.00165 * 95.00234 * 20 3 2 46 46 H 0.97004 * 120.00224 * 0.27655 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3856 3.0630 -0.0868 8 8 6.1639 2.1478 -0.2584 9 6 5.8935 4.4620 0.0359 10 8 5.1152 5.3774 0.2080 11 7 7.2162 4.7082 -0.0444 12 6 7.6846 6.0260 -0.0266 13 6 8.7989 6.3778 -0.7778 14 6 9.2580 7.6797 -0.7629 15 6 8.6128 8.6344 0.0099 16 8 9.0689 9.9151 0.0284 17 6 10.2162 10.2067 -0.7721 18 6 7.5026 8.2829 0.7643 19 6 7.0393 6.9826 0.7469 20 7 1.6525 2.0975 1.2519 21 6 0.4156 2.6734 1.3689 22 1 -0.2739 2.6452 0.5382 23 6 0.0486 3.2945 2.5549 24 7 0.8874 3.3250 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.5658 5.5007 2.2897 27 1 -2.6060 3.3541 1.8525 28 1 -2.0859 4.0084 4.1290 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9953 0.8311 0.6659 35 1 3.8499 1.0377 -1.0960 36 1 3.4411 3.5483 0.1316 37 1 7.8433 3.9715 -0.1148 38 1 9.3038 5.6338 -1.3763 39 1 10.1220 7.9542 -1.3498 40 1 10.4747 11.2602 -0.6663 41 1 11.0544 9.5924 -0.4431 42 1 9.9948 9.9896 -1.8170 43 1 7.0013 9.0266 1.3660 44 1 6.1753 6.7090 1.3345 45 1 2.2719 2.1231 1.9978 46 1 1.7635 2.9170 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665812898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:51 Heat of formation + Delta-G solvation = -87.695789 kcal Electronic energy + Delta-G solvation = -28189.183994 eV Core-core repulsion = 24078.927485 eV Total energy + Delta-G solvation = -4110.256509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20965 -41.04341 -40.03095 -38.48863 -38.37903 -36.00532 -35.24044 -34.31583 -32.18683 -31.38144 -30.48627 -29.60489 -28.15260 -26.36377 -25.23330 -24.06046 -23.88294 -22.63831 -21.83277 -21.23860 -19.96686 -19.41113 -19.14237 -18.55944 -17.58925 -17.35669 -17.07499 -16.73293 -16.62790 -16.48809 -16.11058 -15.63106 -15.51383 -15.25348 -15.07180 -14.75066 -14.70817 -14.37847 -14.19942 -13.88443 -13.79044 -13.63474 -13.23776 -13.07049 -12.76947 -12.67643 -12.61136 -12.37929 -12.09592 -11.97597 -11.87075 -11.83994 -11.53696 -11.20076 -11.09872 -10.93468 -10.77769 -10.33002 -10.08331 -9.07883 -8.86710 -8.27539 -5.22758 -0.10420 0.26396 0.49545 1.17594 1.60203 1.69611 1.82251 1.97643 2.35076 2.51073 2.68867 2.74638 3.26767 3.49124 3.71715 3.76557 3.79027 3.86617 4.13763 4.25601 4.29378 4.38877 4.40351 4.43765 4.48236 4.48860 4.59180 4.71612 4.76494 4.81153 4.95838 4.97417 5.01271 5.12074 5.16473 5.22481 5.23686 5.28564 5.47085 5.66148 5.68790 5.73259 5.84271 6.21381 6.39956 6.57863 6.59033 6.78666 7.14632 8.04560 8.15946 9.23211 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.002481 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.339448 B =11285.207708 C =12992.948582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.166 3.834 4 H 0.056 0.944 5 C 0.118 3.882 6 N -0.681 5.681 7 C 0.510 3.490 8 O -0.539 6.539 9 C 0.505 3.495 10 O -0.524 6.524 11 N -0.627 5.627 12 C 0.083 3.917 13 C -0.087 4.087 14 C -0.183 4.183 15 C 0.112 3.888 16 O -0.336 6.336 17 C 0.016 3.984 18 C -0.149 4.149 19 C -0.096 4.096 20 N -0.740 5.740 21 C -0.303 4.303 22 H 0.072 0.928 23 C -0.107 4.107 24 N -0.981 5.981 25 Si 1.119 2.881 26 H -0.292 1.292 27 H -0.271 1.271 28 H -0.300 1.300 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.415 0.585 37 H 0.432 0.568 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.134 0.866 44 H 0.123 0.877 45 H 0.358 0.642 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.069 5.630 -13.321 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.057 3.943 4 H 0.074 0.926 5 C -0.006 4.006 6 N -0.333 5.333 7 C 0.290 3.710 8 O -0.418 6.418 9 C 0.287 3.713 10 O -0.399 6.399 11 N -0.275 5.275 12 C -0.010 4.010 13 C -0.107 4.107 14 C -0.202 4.202 15 C 0.067 3.933 16 O -0.250 6.250 17 C -0.078 4.078 18 C -0.169 4.169 19 C -0.116 4.116 20 N -0.383 5.383 21 C -0.435 4.435 22 H 0.090 0.910 23 C -0.298 4.298 24 N -0.630 5.630 25 Si 0.946 3.054 26 H -0.219 1.219 27 H -0.197 1.197 28 H -0.227 1.227 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.252 0.748 37 H 0.272 0.728 38 H 0.181 0.819 39 H 0.184 0.816 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.190 0.810 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 18.765 6.553 -12.436 23.446 hybrid contribution 1.018 -0.894 -0.344 1.397 sum 19.783 5.660 -12.779 24.222 Atomic orbital electron populations 1.21695 0.96085 1.00603 1.01703 1.21961 0.96590 0.96743 1.01424 1.20720 0.90843 0.93629 0.89095 0.92585 1.21873 0.94480 0.81197 1.03039 1.45887 1.06614 1.11902 1.68862 1.19827 0.83650 0.88690 0.78820 1.90728 1.55895 1.45661 1.49516 1.20336 0.83537 0.89501 0.77881 1.90820 1.56602 1.46106 1.46379 1.42914 1.06525 1.07974 1.70079 1.17833 0.98388 0.84031 1.00739 1.21028 0.95329 0.97235 0.97087 1.21367 1.03373 0.92436 1.03039 1.19165 0.93867 0.84396 0.95915 1.86082 1.47396 1.24746 1.66766 1.23394 0.85634 1.03944 0.94867 1.20422 0.97307 0.96314 1.02825 1.21081 0.99944 0.92760 0.97847 1.42598 1.15871 1.67362 1.12462 1.20241 0.93195 1.29825 1.00226 0.90988 1.26848 1.08180 1.01989 0.92765 1.70958 1.08606 1.50034 1.33354 0.82703 0.71851 0.75595 0.75216 1.21892 1.19665 1.22738 0.93414 0.92632 0.93500 0.90031 0.93330 0.91442 0.88382 0.74824 0.72805 0.81931 0.81555 0.86547 0.91150 0.91419 0.84763 0.85955 0.80999 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 3 C 0.17 5.83 2.59 44.99 0.12 5.95 16 4 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 5 C 0.12 3.61 5.23 86.38 0.45 4.06 16 6 N -0.68 -22.65 5.38 -464.54 -2.50 -25.15 16 7 C 0.51 16.17 7.88 87.23 0.69 16.86 16 8 O -0.54 -17.41 16.48 -3.28 -0.05 -17.47 16 9 C 0.51 15.61 7.73 87.23 0.67 16.29 16 10 O -0.52 -19.45 13.91 -3.36 -0.05 -19.50 16 11 N -0.63 -15.04 5.32 -304.75 -1.62 -16.66 16 12 C 0.08 1.98 6.30 38.19 0.24 2.22 16 13 C -0.09 -1.46 9.96 22.39 0.22 -1.24 16 14 C -0.18 -2.85 9.03 22.35 0.20 -2.65 16 15 C 0.11 2.32 6.69 22.51 0.15 2.47 16 16 O -0.34 -6.28 10.50 -93.10 -0.98 -7.26 16 17 C 0.02 0.14 9.81 113.37 1.11 1.25 16 18 C -0.15 -3.71 9.98 22.35 0.22 -3.49 16 19 C -0.10 -2.68 8.69 22.39 0.19 -2.48 16 20 N -0.74 -33.86 4.50 -322.94 -1.45 -35.32 16 21 C -0.30 -15.76 7.75 84.03 0.65 -15.11 16 22 H 0.07 3.65 7.32 -2.91 -0.02 3.63 16 23 C -0.11 -6.01 5.50 84.86 0.47 -5.55 16 24 N -0.98 -60.71 13.70 21.65 0.30 -60.42 16 25 Si 1.12 52.00 29.92 68.60 2.05 54.05 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.95 5.99 -2.38 -0.01 1.94 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.41 15.52 7.61 -92.71 -0.71 14.82 16 37 H 0.43 8.16 8.30 -92.71 -0.77 7.39 16 38 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.17 1.40 6.29 -2.91 -0.02 1.38 16 40 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 42 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 43 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.12 4.02 6.22 -2.91 -0.02 4.00 16 45 H 0.36 17.80 6.63 -92.71 -0.61 17.19 16 46 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16 Total: -1.00 -70.83 384.61 1.01 -69.82 By element: Atomic # 1 Polarization: 48.20 SS G_CDS: -0.91 Total: 47.30 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.23 Total: 10.61 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -5.28 Total: -137.55 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.08 Total: -44.22 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 2.05 Total: 54.05 kcal Total: -70.83 1.01 -69.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665812898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.879 kcal (2) G-P(sol) polarization free energy of solvation -70.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds