Wall clock time and date at job start Tue Mar 31 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47598 * 2 1 4 4 C 1.53004 * 109.47117 * 240.00141 * 2 1 3 5 5 O 1.42903 * 109.47292 * 120.00038 * 2 1 3 6 6 C 1.35902 * 116.99686 * 55.56907 * 5 2 1 7 7 C 1.38807 * 120.01968 * 6.35282 * 6 5 2 8 8 C 1.38170 * 120.08294 * 179.97438 * 7 6 5 9 9 C 1.38169 * 120.12357 * 0.05527 * 8 7 6 10 10 C 1.38885 * 120.03908 * 359.94910 * 9 8 7 11 11 N 1.39943 * 120.04182 * 180.02562 * 10 9 8 12 12 C 1.34777 * 119.99658 * 322.20986 * 11 10 9 13 13 O 1.21585 * 120.00035 * 359.94524 * 12 11 10 14 14 N 1.34772 * 120.00193 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00411 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47232 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99762 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99823 * 179.97438 * 16 15 14 19 19 C 1.37091 * 119.99789 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00337 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00101 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00397 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46845 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46867 * 120.00023 * 23 21 19 26 26 H 1.48495 * 109.47187 * 240.00097 * 23 21 19 27 27 C 1.38579 * 120.02040 * 186.37887 * 6 5 2 28 28 H 1.09003 * 109.47104 * 306.89104 * 1 2 3 29 29 H 1.09004 * 109.46935 * 66.88375 * 1 2 3 30 30 H 1.08993 * 109.47411 * 186.88933 * 1 2 3 31 31 H 1.08994 * 109.47516 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47169 * 300.00488 * 3 2 1 33 33 H 1.09007 * 109.46890 * 60.00155 * 3 2 1 34 34 H 1.08999 * 109.46605 * 284.16346 * 4 2 1 35 35 H 1.08995 * 109.46876 * 44.15902 * 4 2 1 36 36 H 1.08997 * 109.47028 * 164.16617 * 4 2 1 37 37 H 1.07997 * 119.95935 * 0.02695 * 7 6 5 38 38 H 1.07999 * 119.93833 * 180.02562 * 8 7 6 39 39 H 1.07997 * 119.98325 * 179.97438 * 9 8 7 40 40 H 0.96996 * 120.00515 * 142.21356 * 11 10 9 41 41 H 0.97003 * 120.00056 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.46953 * 300.00443 * 15 14 12 43 43 H 1.09003 * 109.46425 * 60.00058 * 15 14 12 44 44 H 0.97004 * 120.00035 * 0.02562 * 18 16 15 45 45 H 0.97002 * 120.00687 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.06196 * 0.25425 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5665 -1.9436 1.3688 7 6 0.8013 -2.5760 0.3986 8 6 0.3539 -3.8673 0.6023 9 6 0.6655 -4.5326 1.7725 10 6 1.4308 -3.9047 2.7467 11 7 1.7469 -4.5787 3.9316 12 6 0.8371 -5.3874 4.5101 13 8 -0.2587 -5.5306 4.0030 14 7 1.1416 -6.0370 5.6510 15 6 0.1525 -6.9157 6.2802 16 6 0.7378 -7.5152 7.5329 17 8 1.8699 -7.2363 7.8669 18 7 0.0031 -8.3612 8.2819 19 6 0.5358 -8.9070 9.4211 20 1 1.5439 -8.6587 9.7186 21 6 -0.2214 -9.7796 10.1931 22 7 -1.4478 -10.0821 9.8309 23 14 0.5040 -10.5227 11.7458 24 1 1.8909 -10.0255 11.9313 25 1 -0.3226 -10.1303 12.9153 26 1 0.5203 -12.0027 11.6254 27 6 1.8812 -2.6077 2.5436 28 1 -0.3633 0.6169 0.8219 29 1 -0.3633 0.4035 -0.9452 30 1 -0.3634 -1.0202 0.1233 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.9240 -1.7973 -1.1203 35 1 1.4660 -0.3953 -2.1167 36 1 3.0932 -0.4849 -1.4007 37 1 0.5561 -2.0584 -0.5170 38 1 -0.2410 -4.3573 -0.1543 39 1 0.3143 -5.5417 1.9295 40 1 2.6207 -4.4638 4.3367 41 1 2.0155 -5.9222 6.0561 42 1 -0.7363 -6.3384 6.5350 43 1 -0.1181 -7.7127 5.5876 44 1 -0.9022 -8.5845 8.0145 45 1 -1.9766 -10.6910 10.3700 46 1 2.4726 -2.1156 3.3015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675069656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:17 Heat of formation + Delta-G solvation = -80.466375 kcal Electronic energy + Delta-G solvation = -27763.958553 eV Core-core repulsion = 23654.015535 eV Total energy + Delta-G solvation = -4109.943018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02709 -41.34788 -40.18530 -38.75027 -36.27228 -35.68617 -35.36148 -35.05231 -33.37602 -31.24455 -30.82539 -29.11445 -28.32331 -27.90123 -26.40210 -24.12628 -23.50846 -22.32992 -21.42586 -21.00439 -20.12578 -19.72166 -18.74526 -17.80426 -17.47575 -17.21641 -17.09725 -16.61986 -16.36241 -16.24874 -16.11454 -15.69335 -15.63719 -15.17922 -14.93839 -14.81833 -14.57786 -14.31229 -13.98440 -13.78290 -13.55179 -13.49876 -13.16774 -13.11832 -12.91491 -12.85720 -12.72610 -12.57109 -12.44438 -12.11213 -11.83864 -11.70112 -11.58052 -11.56710 -11.24509 -11.03026 -10.56789 -10.28292 -10.08974 -9.46829 -8.90063 -8.51153 -6.01323 0.25365 0.49189 1.35212 1.35623 1.44351 1.57914 1.88114 1.97961 2.24023 2.31111 2.82069 2.98942 3.16165 3.22667 3.75754 3.85460 3.93666 4.00497 4.10466 4.18308 4.28452 4.30846 4.42212 4.44345 4.54510 4.61971 4.64094 4.69846 4.77572 4.86948 4.92971 4.99294 5.17079 5.19376 5.23962 5.28942 5.31244 5.33208 5.38785 5.41069 5.55424 5.83706 5.92294 5.92902 6.47712 6.53030 6.85235 7.03573 7.34456 7.44895 7.94117 8.65870 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.001682 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.904404 B =16642.344348 C =16942.510472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.099 3.901 3 C -0.137 4.137 4 C -0.198 4.198 5 O -0.322 6.322 6 C 0.146 3.854 7 C -0.231 4.231 8 C -0.067 4.067 9 C -0.173 4.173 10 C 0.192 3.808 11 N -0.675 5.675 12 C 0.707 3.293 13 O -0.607 6.607 14 N -0.717 5.717 15 C 0.141 3.859 16 C 0.433 3.567 17 O -0.624 6.624 18 N -0.558 5.558 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.010 4.010 22 N -0.915 5.915 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.191 4.191 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.174 0.826 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.422 0.578 41 H 0.412 0.588 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 19.496 -23.407 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.062 3.938 3 C -0.194 4.194 4 C -0.254 4.254 5 O -0.236 6.236 6 C 0.100 3.900 7 C -0.249 4.249 8 C -0.085 4.085 9 C -0.194 4.194 10 C 0.096 3.904 11 N -0.324 5.324 12 C 0.407 3.593 13 O -0.487 6.487 14 N -0.374 5.374 15 C 0.013 3.987 16 C 0.220 3.780 17 O -0.512 6.512 18 N -0.194 5.194 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.555 5.555 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.212 4.212 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.191 0.809 38 H 0.168 0.832 39 H 0.135 0.865 40 H 0.260 0.740 41 H 0.251 0.749 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.234 0.766 45 H 0.089 0.911 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.031 19.487 -23.344 30.674 hybrid contribution 0.390 -0.692 1.254 1.484 sum 4.421 18.795 -22.090 29.339 Atomic orbital electron populations 1.22950 0.94325 1.04504 1.04249 1.22108 0.94493 0.93559 0.83655 1.21847 1.02099 0.91649 1.03805 1.22865 1.02938 1.02274 0.97353 1.86123 1.67466 1.23910 1.46137 1.18582 0.93643 0.84416 0.93333 1.22091 1.04099 0.96958 1.01777 1.21113 0.97261 0.93938 0.96222 1.21151 1.02929 1.01328 0.93959 1.17221 0.97755 0.90320 0.85054 1.42376 1.17636 1.47140 1.25211 1.15813 0.83896 0.79046 0.80496 1.90916 1.23150 1.68683 1.65907 1.44655 1.19389 1.48301 1.25033 1.20644 0.91330 0.94382 0.92330 1.20386 0.86889 0.83586 0.87097 1.90473 1.20703 1.65742 1.74288 1.41826 1.15847 1.39568 1.22148 1.19777 1.00566 1.25050 1.01245 0.89543 1.26123 0.95690 0.96937 1.02352 1.69684 1.09460 1.35591 1.40805 0.84806 0.78251 0.77952 0.76933 1.19462 1.19691 1.19646 1.20111 1.09396 0.92925 0.98750 0.92331 0.88650 0.90233 0.91655 0.88222 0.92115 0.90481 0.88793 0.91478 0.80934 0.83246 0.86500 0.73988 0.74935 0.88771 0.88563 0.76646 0.91072 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 8.05 71.98 0.58 -1.75 16 2 C 0.10 1.26 1.11 -10.79 -0.01 1.24 16 3 C -0.14 -1.30 8.78 71.98 0.63 -0.67 16 4 C -0.20 -1.92 8.13 71.98 0.59 -1.33 16 5 O -0.32 -6.29 9.79 -92.45 -0.90 -7.20 16 6 C 0.15 3.08 6.09 22.49 0.14 3.22 16 7 C -0.23 -4.14 5.81 22.39 0.13 -4.01 16 8 C -0.07 -1.35 10.03 22.24 0.22 -1.12 16 9 C -0.17 -4.54 8.65 22.41 0.19 -4.35 16 10 C 0.19 4.94 6.22 38.13 0.24 5.18 16 11 N -0.67 -17.13 5.34 -317.23 -1.69 -18.82 16 12 C 0.71 22.66 8.35 179.06 1.49 24.16 16 13 O -0.61 -23.07 14.11 -3.99 -0.06 -23.12 16 14 N -0.72 -23.29 5.53 -482.28 -2.67 -25.96 16 15 C 0.14 5.10 6.15 85.63 0.53 5.63 16 16 C 0.43 19.76 7.85 87.66 0.69 20.45 16 17 O -0.62 -31.85 15.24 -3.05 -0.05 -31.90 16 18 N -0.56 -27.81 5.29 -306.99 -1.62 -29.43 16 19 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 20 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 21 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 22 N -0.92 -48.41 13.05 21.66 0.28 -48.12 16 23 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 27 C -0.19 -4.38 9.91 22.48 0.22 -4.16 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.62 8.02 -2.39 -0.02 0.60 16 30 H 0.08 1.07 4.38 -2.39 -0.01 1.05 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.08 0.89 4.72 -2.39 -0.01 0.88 16 35 H 0.09 0.49 7.95 -2.39 -0.02 0.47 16 36 H 0.07 0.65 8.04 -2.39 -0.02 0.64 16 37 H 0.17 2.19 3.49 -2.91 -0.01 2.18 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.12 3.52 6.58 -2.91 -0.02 3.50 16 40 H 0.42 8.16 8.84 -92.71 -0.82 7.34 16 41 H 0.41 12.93 7.45 -92.71 -0.69 12.24 16 42 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.40 19.10 7.90 -92.71 -0.73 18.36 16 45 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 46 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -68.89 377.33 1.05 -67.83 By element: Atomic # 1 Polarization: 49.49 SS G_CDS: -1.18 Total: 48.30 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 6.92 Total: 24.76 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.70 Total: -122.33 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -1.01 Total: -62.22 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -68.89 1.05 -67.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675069656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.632 kcal (2) G-P(sol) polarization free energy of solvation -68.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds