Wall clock time and date at job start Tue Mar 31 2020 18:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 H 1.08996 * 109.47468 * 55.00044 * 3 2 1 5 5 N 1.46503 * 109.46802 * 294.99549 * 3 2 1 6 6 C 1.34772 * 119.99737 * 85.00894 * 5 3 2 7 7 O 1.21586 * 120.00552 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99948 * 179.97438 * 6 5 3 9 9 C 1.46504 * 120.00250 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47019 * 180.02562 * 9 8 6 11 11 O 1.21289 * 120.00543 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99716 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99818 * 179.97438 * 12 10 9 14 14 H 1.07995 * 120.00259 * 0.02562 * 13 12 10 15 15 C 1.38954 * 119.99787 * 180.02562 * 13 12 10 16 16 N 1.31407 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99792 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47074 * 59.99887 * 17 15 13 19 19 H 1.48501 * 109.46978 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46957 * 299.99838 * 17 15 13 21 21 C 1.53002 * 109.46954 * 175.00093 * 3 2 1 22 22 H 1.09002 * 109.47070 * 174.99771 * 21 3 2 23 23 O 1.42898 * 109.47113 * 54.99641 * 21 3 2 24 24 C 1.50703 * 109.46966 * 294.99681 * 21 3 2 25 25 C 1.38236 * 119.99787 * 84.72732 * 24 21 3 26 26 C 1.38241 * 119.99636 * 179.81278 * 25 24 21 27 27 C 1.38234 * 120.00115 * 0.39672 * 26 25 24 28 28 C 1.38240 * 119.99714 * 359.85290 * 27 26 25 29 29 C 1.38228 * 120.00011 * 265.00375 * 24 21 3 30 30 H 1.08997 * 109.47278 * 300.00309 * 1 2 3 31 31 H 1.09005 * 109.46697 * 60.00115 * 1 2 3 32 32 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47278 * 239.99691 * 2 1 3 34 34 H 1.09001 * 109.46965 * 119.99455 * 2 1 3 35 35 H 0.96999 * 119.99735 * 264.99721 * 5 3 2 36 36 H 0.97004 * 119.99621 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46575 * 299.99954 * 9 8 6 38 38 H 1.08995 * 109.46652 * 59.99667 * 9 8 6 39 39 H 0.96993 * 119.99812 * 0.02562 * 12 10 9 40 40 H 0.97006 * 119.99778 * 180.02562 * 16 15 13 41 41 H 0.96698 * 113.99898 * 299.99778 * 23 21 3 42 42 H 1.07996 * 120.00216 * 359.97438 * 25 24 21 43 43 H 1.08000 * 119.99857 * 180.22806 * 26 25 24 44 44 H 1.07998 * 120.00030 * 179.84064 * 27 26 25 45 45 H 1.08003 * 119.99655 * 179.97438 * 28 27 26 46 46 H 1.08004 * 120.00508 * 359.97379 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3416 2.6320 -0.4322 8 7 0.0788 3.2673 -2.5186 9 6 -1.2446 3.8831 -2.6440 10 6 -1.3913 4.4828 -4.0187 11 8 -0.4800 4.4041 -4.8152 12 7 -2.5354 5.1067 -4.3631 13 6 -2.6687 5.6527 -5.6136 14 1 -1.8572 5.5826 -6.3228 15 6 -3.8479 6.2964 -5.9685 16 7 -4.8350 6.3822 -5.1053 17 14 -4.0298 7.0398 -7.6725 18 1 -3.8807 5.9742 -8.6959 19 1 -5.3710 7.6645 -7.7994 20 1 -2.9821 8.0721 -7.8766 21 6 3.5648 1.4444 0.1257 22 1 3.9355 2.4656 0.0365 23 8 4.1293 0.6404 -0.9121 24 6 3.9589 0.8823 1.4673 25 6 4.0736 -0.4848 1.6371 26 6 4.4389 -1.0003 2.8667 27 6 4.6814 -0.1491 3.9286 28 6 4.5617 1.2178 3.7600 29 6 4.2001 1.7334 2.5294 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2720 2.1231 -1.9978 36 1 0.6983 3.2928 -3.2646 37 1 -2.0136 3.1252 -2.4946 38 1 -1.3542 4.6649 -1.8925 39 1 -3.2640 5.1700 -3.7260 40 1 -5.6584 6.8312 -5.3532 41 1 3.8426 -0.2829 -0.8942 42 1 3.8804 -1.1500 0.8086 43 1 4.5321 -2.0681 2.9985 44 1 4.9643 -0.5519 4.8899 45 1 4.7508 1.8828 4.5897 46 1 4.1065 2.8013 2.3979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680958445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:07 Heat of formation + Delta-G solvation = -95.455745 kcal Electronic energy + Delta-G solvation = -28365.741761 eV Core-core repulsion = 24255.148755 eV Total energy + Delta-G solvation = -4110.593006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69976 -39.64994 -38.31825 -37.57029 -35.01706 -34.31794 -33.65292 -32.30131 -31.86104 -31.35105 -31.15844 -28.44403 -27.05311 -24.66410 -24.24162 -22.99509 -22.01174 -20.87993 -20.44879 -19.56655 -18.45110 -18.12840 -17.94986 -16.67906 -16.18862 -15.99152 -15.74010 -15.55069 -15.38097 -14.85008 -14.57718 -14.44011 -14.32549 -14.00821 -13.93633 -13.75014 -13.42642 -13.21618 -13.09108 -12.71023 -12.36976 -12.15963 -12.00760 -11.84280 -11.63062 -11.60244 -11.43996 -11.17922 -11.09735 -10.89667 -10.49927 -10.47400 -10.30351 -9.94852 -9.61356 -9.28089 -9.25712 -8.94482 -8.60883 -8.58174 -8.08636 -6.50079 -3.92089 0.91163 1.01662 2.78200 3.14668 3.22288 3.26286 3.37407 3.41885 3.76829 4.02708 4.09474 4.21607 4.38082 4.43652 4.55983 4.64046 4.70060 4.76749 4.91998 4.97409 5.07685 5.13282 5.18545 5.30916 5.38107 5.55192 5.58503 5.63119 5.77589 5.92158 5.93239 6.02172 6.05745 6.09895 6.10520 6.13514 6.17210 6.45702 6.54294 6.59523 6.79418 7.13874 7.16351 7.47037 7.93638 8.27324 8.46805 8.82996 9.05970 9.40972 9.89062 10.66735 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.001891 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.529974 B =14804.075652 C =14935.763078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.141 3.859 4 H 0.098 0.902 5 N -0.740 5.740 6 C 0.705 3.295 7 O -0.593 6.593 8 N -0.725 5.725 9 C 0.130 3.870 10 C 0.428 3.572 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.934 3.066 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.140 3.860 22 H 0.115 0.885 23 O -0.550 6.550 24 C -0.111 4.111 25 C -0.109 4.109 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.107 4.107 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.407 0.593 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.374 0.626 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.923 -13.936 16.827 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.035 3.965 4 H 0.116 0.884 5 N -0.397 5.397 6 C 0.405 3.595 7 O -0.472 6.472 8 N -0.382 5.382 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.484 6.484 12 N -0.184 5.184 13 C -0.435 4.435 14 H 0.122 0.878 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.080 3.920 22 H 0.133 0.867 23 O -0.357 6.357 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.125 4.125 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.223 0.777 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.849 -13.329 16.950 27.366 hybrid contribution -0.392 -0.045 -0.882 0.966 sum 16.457 -13.374 16.068 26.606 Atomic orbital electron populations 1.21732 0.94015 1.00308 1.03682 1.22108 0.98322 0.96058 1.01824 1.21406 0.93255 0.93992 0.87894 0.88426 1.44987 1.16303 1.61459 1.16915 1.15814 0.82060 0.78384 0.83254 1.90912 1.51814 1.65416 1.39033 1.44794 1.18318 1.59895 1.15212 1.20763 0.84211 0.97975 0.96926 1.19783 0.84723 0.85212 0.88885 1.90492 1.40811 1.64363 1.52754 1.41782 1.13736 1.47979 1.14935 1.19677 1.01320 1.31990 0.90477 0.87753 1.25323 0.95097 0.97425 0.99889 1.69609 1.05452 1.42977 1.35469 0.85871 0.77397 0.79244 0.81439 1.19800 1.20867 1.19803 1.21144 0.91493 0.95670 0.83693 0.86688 1.86632 1.72219 1.25043 1.51785 1.20355 1.00652 0.94204 0.95947 1.20894 0.99699 0.94419 0.97650 1.21127 0.99583 0.99890 0.93023 1.21204 0.99901 0.93670 0.98948 1.21171 0.99581 0.95486 0.97296 1.21031 0.98943 0.99829 0.92664 0.92131 0.91887 0.93889 0.91896 0.90791 0.76510 0.75614 0.90109 0.90071 0.77030 0.91559 0.77654 0.86052 0.85900 0.86032 0.85840 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.51 37.16 0.32 -1.38 16 2 C -0.14 -1.34 4.55 -26.73 -0.12 -1.46 16 3 C 0.14 1.41 2.12 -67.93 -0.14 1.27 16 4 H 0.10 1.17 7.58 -51.93 -0.39 0.77 16 5 N -0.74 -8.68 5.02 -58.67 -0.29 -8.98 16 6 C 0.71 11.00 7.13 -86.92 -0.62 10.38 16 7 O -0.59 -10.79 13.48 5.29 0.07 -10.71 16 8 N -0.72 -12.07 5.53 -66.42 -0.37 -12.44 16 9 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 10 C 0.43 9.85 7.85 -10.98 -0.09 9.76 16 11 O -0.60 -15.33 15.24 5.55 0.08 -15.24 16 12 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 13 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 14 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.95 13.05 55.50 0.72 -23.22 16 17 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.14 1.16 3.16 -27.88 -0.09 1.07 16 22 H 0.12 0.97 8.05 -51.93 -0.42 0.55 16 23 O -0.55 -4.56 12.77 -35.23 -0.45 -5.01 16 24 C -0.11 -0.88 4.74 -104.62 -0.50 -1.38 16 25 C -0.11 -0.77 7.34 -39.58 -0.29 -1.06 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 27 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 28 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 29 C -0.11 -0.84 9.68 -39.59 -0.38 -1.22 16 30 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 31 H 0.06 0.93 5.64 -51.93 -0.29 0.64 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.51 7.00 -51.93 -0.36 0.15 16 34 H 0.07 0.59 5.52 -51.93 -0.29 0.30 16 35 H 0.40 4.17 8.40 -40.82 -0.34 3.83 16 36 H 0.41 6.70 7.45 -40.82 -0.30 6.40 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 41 H 0.37 2.17 5.66 45.56 0.26 2.43 16 42 H 0.12 0.63 6.09 -52.49 -0.32 0.31 16 43 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -32.20 377.06 -8.67 -40.87 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -5.66 Total: 20.33 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -3.38 Total: 6.86 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.00 Total: -58.36 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.29 Total: -30.97 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.20 -8.67 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.587 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds