Wall clock time and date at job start Tue Mar 31 2020 18:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 H 1.08996 * 109.47468 * 55.00044 * 3 2 1 5 5 N 1.46503 * 109.46802 * 294.99549 * 3 2 1 6 6 C 1.34772 * 119.99737 * 85.00894 * 5 3 2 7 7 O 1.21586 * 120.00552 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99948 * 179.97438 * 6 5 3 9 9 C 1.46504 * 120.00250 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47019 * 180.02562 * 9 8 6 11 11 O 1.21289 * 120.00543 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99716 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99818 * 179.97438 * 12 10 9 14 14 H 1.07995 * 120.00259 * 0.02562 * 13 12 10 15 15 C 1.38954 * 119.99787 * 180.02562 * 13 12 10 16 16 N 1.31407 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99792 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47074 * 59.99887 * 17 15 13 19 19 H 1.48501 * 109.46978 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46957 * 299.99838 * 17 15 13 21 21 C 1.53002 * 109.46954 * 175.00093 * 3 2 1 22 22 H 1.09002 * 109.47070 * 174.99771 * 21 3 2 23 23 O 1.42898 * 109.47113 * 54.99641 * 21 3 2 24 24 C 1.50703 * 109.46966 * 294.99681 * 21 3 2 25 25 C 1.38236 * 119.99787 * 84.72732 * 24 21 3 26 26 C 1.38241 * 119.99636 * 179.81278 * 25 24 21 27 27 C 1.38234 * 120.00115 * 0.39672 * 26 25 24 28 28 C 1.38240 * 119.99714 * 359.85290 * 27 26 25 29 29 C 1.38228 * 120.00011 * 265.00375 * 24 21 3 30 30 H 1.08997 * 109.47278 * 300.00309 * 1 2 3 31 31 H 1.09005 * 109.46697 * 60.00115 * 1 2 3 32 32 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47278 * 239.99691 * 2 1 3 34 34 H 1.09001 * 109.46965 * 119.99455 * 2 1 3 35 35 H 0.96999 * 119.99735 * 264.99721 * 5 3 2 36 36 H 0.97004 * 119.99621 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46575 * 299.99954 * 9 8 6 38 38 H 1.08995 * 109.46652 * 59.99667 * 9 8 6 39 39 H 0.96993 * 119.99812 * 0.02562 * 12 10 9 40 40 H 0.97006 * 119.99778 * 180.02562 * 16 15 13 41 41 H 0.96698 * 113.99898 * 299.99778 * 23 21 3 42 42 H 1.07996 * 120.00216 * 359.97438 * 25 24 21 43 43 H 1.08000 * 119.99857 * 180.22806 * 26 25 24 44 44 H 1.07998 * 120.00030 * 179.84064 * 27 26 25 45 45 H 1.08003 * 119.99655 * 179.97438 * 28 27 26 46 46 H 1.08004 * 120.00508 * 359.97379 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3416 2.6320 -0.4322 8 7 0.0788 3.2673 -2.5186 9 6 -1.2446 3.8831 -2.6440 10 6 -1.3913 4.4828 -4.0187 11 8 -0.4800 4.4041 -4.8152 12 7 -2.5354 5.1067 -4.3631 13 6 -2.6687 5.6527 -5.6136 14 1 -1.8572 5.5826 -6.3228 15 6 -3.8479 6.2964 -5.9685 16 7 -4.8350 6.3822 -5.1053 17 14 -4.0298 7.0398 -7.6725 18 1 -3.8807 5.9742 -8.6959 19 1 -5.3710 7.6645 -7.7994 20 1 -2.9821 8.0721 -7.8766 21 6 3.5648 1.4444 0.1257 22 1 3.9355 2.4656 0.0365 23 8 4.1293 0.6404 -0.9121 24 6 3.9589 0.8823 1.4673 25 6 4.0736 -0.4848 1.6371 26 6 4.4389 -1.0003 2.8667 27 6 4.6814 -0.1491 3.9286 28 6 4.5617 1.2178 3.7600 29 6 4.2001 1.7334 2.5294 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2720 2.1231 -1.9978 36 1 0.6983 3.2928 -3.2646 37 1 -2.0136 3.1252 -2.4946 38 1 -1.3542 4.6649 -1.8925 39 1 -3.2640 5.1700 -3.7260 40 1 -5.6584 6.8312 -5.3532 41 1 3.8426 -0.2829 -0.8942 42 1 3.8804 -1.1500 0.8086 43 1 4.5321 -2.0681 2.9985 44 1 4.9643 -0.5519 4.8899 45 1 4.7508 1.8828 4.5897 46 1 4.1065 2.8013 2.3979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680958445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:06 Heat of formation + Delta-G solvation = -120.137916 kcal Electronic energy + Delta-G solvation = -28366.812060 eV Core-core repulsion = 24255.148755 eV Total energy + Delta-G solvation = -4111.663305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62149 -40.66889 -39.97186 -38.37009 -36.28790 -35.80770 -35.20436 -33.43820 -33.16941 -32.47488 -31.69590 -29.58976 -28.32526 -26.32747 -25.20339 -23.56184 -22.75755 -21.85112 -21.44690 -21.28891 -20.11524 -19.56212 -18.74906 -17.58887 -17.43809 -17.13312 -16.74868 -16.57644 -16.51314 -16.13115 -16.08679 -15.78075 -15.41916 -15.17281 -14.92590 -14.75868 -14.42651 -14.12176 -13.92561 -13.74609 -13.68820 -13.53173 -13.35132 -13.06722 -12.88659 -12.58370 -12.48579 -12.46212 -12.13368 -12.00102 -11.87221 -11.74602 -11.55686 -11.31103 -11.11260 -10.54594 -10.29393 -10.09728 -9.87857 -9.79344 -9.57360 -8.50277 -6.00513 0.37605 0.50664 1.38548 1.42604 1.52966 1.63255 1.91027 2.17690 2.29105 2.82554 3.05565 3.16866 3.31079 3.44036 3.60170 3.74840 3.88611 4.06633 4.14758 4.16797 4.22625 4.30632 4.42236 4.45809 4.47997 4.53812 4.62750 4.69612 4.79265 4.97714 5.03279 5.05911 5.14959 5.17174 5.32306 5.38918 5.49973 5.53684 5.58793 5.62660 5.64058 5.92228 5.98847 6.10250 6.49004 6.65096 7.04080 7.06782 7.44018 7.59499 7.95491 8.66358 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.001891 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.529974 B =14804.075652 C =14935.763078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.142 3.858 4 H 0.077 0.923 5 N -0.725 5.725 6 C 0.706 3.294 7 O -0.619 6.619 8 N -0.727 5.727 9 C 0.144 3.856 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.338 4.338 14 H 0.086 0.914 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.154 3.846 22 H 0.112 0.888 23 O -0.557 6.557 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.125 4.125 27 C -0.126 4.126 28 C -0.129 4.129 29 C -0.124 4.124 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.386 0.614 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.922 -15.106 17.165 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.036 3.964 4 H 0.096 0.904 5 N -0.381 5.381 6 C 0.406 3.594 7 O -0.500 6.500 8 N -0.384 5.384 9 C 0.016 3.984 10 C 0.220 3.780 11 O -0.512 6.512 12 N -0.195 5.195 13 C -0.467 4.467 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.195 1.195 21 C 0.094 3.906 22 H 0.129 0.871 23 O -0.365 6.365 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.146 4.146 29 C -0.142 4.142 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.245 0.755 36 H 0.246 0.754 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.237 0.763 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.879 -14.529 17.310 28.816 hybrid contribution -0.643 0.253 -0.898 1.133 sum 17.236 -14.276 16.412 27.753 Atomic orbital electron populations 1.21664 0.96098 1.00414 1.01268 1.22070 0.96215 0.95679 1.03581 1.21506 0.94618 0.94073 0.86161 0.90444 1.44917 1.14958 1.60367 1.17854 1.15881 0.82859 0.78288 0.82417 1.90899 1.52934 1.66423 1.39761 1.44723 1.17637 1.60300 1.15767 1.20539 0.85634 0.98299 0.93954 1.20449 0.83598 0.83845 0.90089 1.90468 1.41548 1.65021 1.54177 1.41831 1.14468 1.48638 1.14566 1.19700 1.01639 1.33961 0.91408 0.89580 1.26136 0.94356 0.97202 1.03501 1.69678 1.05783 1.43150 1.36974 0.84922 0.77749 0.78394 0.76882 1.19497 1.19621 1.19520 1.20914 0.89728 0.95771 0.84200 0.87078 1.86622 1.72202 1.25980 1.51701 1.20358 1.01643 0.94846 0.95562 1.21156 0.99380 0.94227 0.98549 1.21450 0.98991 1.01058 0.92797 1.21527 0.99313 0.93575 0.99951 1.21420 0.99531 0.96222 0.97475 1.21224 0.99493 1.00234 0.93220 0.94084 0.94685 0.92505 0.90070 0.88964 0.75471 0.75439 0.89226 0.89166 0.76720 0.91080 0.76306 0.84219 0.83892 0.84205 0.84536 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.51 71.98 0.61 -2.63 16 2 C -0.14 -2.30 4.55 30.60 0.14 -2.17 16 3 C 0.14 2.73 2.12 44.99 0.10 2.82 16 4 H 0.08 1.86 7.58 -2.39 -0.02 1.84 16 5 N -0.73 -16.49 5.02 -457.81 -2.30 -18.79 16 6 C 0.71 21.87 7.13 179.05 1.28 23.15 16 7 O -0.62 -22.67 13.48 -3.99 -0.05 -22.73 16 8 N -0.73 -24.06 5.53 -482.30 -2.67 -26.73 16 9 C 0.14 5.35 6.15 85.63 0.53 5.88 16 10 C 0.43 20.14 7.85 87.65 0.69 20.83 16 11 O -0.62 -32.42 15.24 -3.06 -0.05 -32.47 16 12 N -0.56 -28.29 5.29 -306.98 -1.62 -29.92 16 13 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 14 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 16 N -0.92 -48.88 13.05 21.66 0.28 -48.59 16 17 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 C 0.15 2.36 3.16 29.85 0.09 2.45 16 22 H 0.11 1.79 8.05 -2.39 -0.02 1.77 16 23 O -0.56 -8.06 12.77 -148.98 -1.90 -9.97 16 24 C -0.12 -1.80 4.74 -19.87 -0.09 -1.89 16 25 C -0.12 -1.37 7.34 22.27 0.16 -1.20 16 26 C -0.13 -1.37 10.05 22.27 0.22 -1.15 16 27 C -0.13 -1.44 10.05 22.27 0.22 -1.22 16 28 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 29 C -0.12 -1.85 9.68 22.27 0.22 -1.63 16 30 H 0.04 1.11 7.84 -2.39 -0.02 1.09 16 31 H 0.03 1.02 5.64 -2.38 -0.01 1.01 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.10 7.00 -2.39 -0.02 1.08 16 34 H 0.09 1.26 5.52 -2.39 -0.01 1.24 16 35 H 0.41 8.06 8.40 -92.71 -0.78 7.28 16 36 H 0.41 13.37 7.45 -92.71 -0.69 12.68 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 40 H 0.28 14.00 8.31 -92.70 -0.77 13.22 16 41 H 0.39 3.39 5.66 -74.06 -0.42 2.98 16 42 H 0.14 1.03 6.09 -2.91 -0.02 1.01 16 43 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -69.17 377.06 -2.17 -71.34 By element: Atomic # 1 Polarization: 51.69 SS G_CDS: -1.56 Total: 50.12 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 5.67 Total: 23.77 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.30 Total: -124.03 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -2.00 Total: -65.16 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -69.17 -2.17 -71.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.798 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds