Wall clock time and date at job start Tue Mar 31 2020 18:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 6 6 C 1.34777 * 120.00199 * 274.99716 * 5 3 2 7 7 O 1.21583 * 119.99959 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00208 * 179.97438 * 6 5 3 9 9 C 1.46494 * 120.00185 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47352 * 180.02562 * 9 8 6 11 11 O 1.21299 * 119.99992 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00574 * 180.02562 * 10 9 8 13 13 C 1.37089 * 120.00679 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99943 * 359.97438 * 13 12 10 15 15 C 1.38956 * 120.00494 * 179.97438 * 13 12 10 16 16 N 1.31406 * 119.99565 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99923 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47636 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47151 * 120.00195 * 17 15 13 20 20 H 1.48503 * 109.46874 * 239.99777 * 17 15 13 21 21 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 22 22 H 1.09000 * 109.46829 * 185.00206 * 21 3 2 23 23 O 1.42896 * 109.46982 * 304.99842 * 21 3 2 24 24 C 1.50694 * 109.47232 * 65.00372 * 21 3 2 25 25 C 1.38238 * 119.99851 * 279.72941 * 24 21 3 26 26 C 1.38237 * 119.99966 * 179.79085 * 25 24 21 27 27 C 1.38237 * 119.99919 * 0.43404 * 26 25 24 28 28 C 1.38239 * 119.99890 * 359.81583 * 27 26 25 29 29 C 1.38229 * 120.00022 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 34 34 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 35 35 H 0.96999 * 119.99886 * 95.00381 * 5 3 2 36 36 H 0.96999 * 119.99877 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46851 * 300.00511 * 9 8 6 38 38 H 1.09001 * 109.46890 * 60.00286 * 9 8 6 39 39 H 0.97009 * 119.99726 * 359.97438 * 12 10 9 40 40 H 0.97002 * 119.99981 * 179.97438 * 16 15 13 41 41 H 0.96701 * 114.00163 * 60.01005 * 23 21 3 42 42 H 1.08005 * 120.00182 * 359.97438 * 25 24 21 43 43 H 1.08002 * 120.00280 * 180.27301 * 26 25 24 44 44 H 1.08001 * 119.99760 * 179.84038 * 27 26 25 45 45 H 1.08001 * 119.99529 * 180.02562 * 28 27 26 46 46 H 1.08000 * 119.99826 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3415 2.6319 0.4322 8 7 0.0783 3.2664 2.5189 9 6 -1.2450 3.8821 2.6443 10 6 -1.3918 4.4818 4.0190 11 8 -0.4808 4.4023 4.8158 12 7 -2.5357 5.1057 4.3635 13 6 -2.6695 5.6508 5.6142 14 1 -1.8583 5.5800 6.3237 15 6 -3.8488 6.2945 5.9692 16 7 -4.8355 6.3810 5.1057 17 14 -4.0306 7.0378 7.6732 18 1 -2.7858 6.8071 8.4494 19 1 -4.2762 8.4974 7.5529 20 1 -5.1748 6.3993 8.3722 21 6 3.5648 1.4444 -0.1258 22 1 3.9355 2.4655 -0.0366 23 8 4.1293 0.6405 0.9121 24 6 3.9589 0.8823 -1.4673 25 6 3.9842 -0.4859 -1.6629 26 6 4.3415 -1.0015 -2.8948 27 6 4.6822 -0.1490 -3.9283 28 6 4.6619 1.2191 -3.7311 29 6 4.3004 1.7347 -2.5006 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2719 2.1231 1.9978 36 1 0.6978 3.2920 3.2649 37 1 -1.3543 4.6645 1.8933 38 1 -2.0140 3.1243 2.4941 39 1 -3.2645 5.1690 3.7264 40 1 -5.6589 6.8300 5.3536 41 1 3.8427 -0.2829 0.8942 42 1 3.7219 -1.1521 -0.8543 43 1 4.3570 -2.0703 -3.0490 44 1 4.9639 -0.5519 -4.8900 45 1 4.9277 1.8850 -4.5387 46 1 4.2850 2.8035 -2.3464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680958447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:11 Heat of formation + Delta-G solvation = -94.761769 kcal Electronic energy + Delta-G solvation = -28367.583345 eV Core-core repulsion = 24257.020432 eV Total energy + Delta-G solvation = -4110.562913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70904 -39.65118 -38.31918 -37.56916 -35.01203 -34.31923 -33.65416 -32.32103 -31.86764 -31.35447 -31.14995 -28.44534 -27.05056 -24.67990 -24.26806 -22.99131 -21.98358 -20.89854 -20.45314 -19.56898 -18.45375 -18.10837 -17.95289 -16.67440 -16.21093 -15.99309 -15.75584 -15.54587 -15.38212 -14.86593 -14.57876 -14.41715 -14.30709 -14.02637 -13.93113 -13.76820 -13.42808 -13.20862 -13.07732 -12.71420 -12.38808 -12.16416 -12.00373 -11.84402 -11.64519 -11.61725 -11.42084 -11.17299 -11.13766 -10.89331 -10.45567 -10.40207 -10.31681 -9.94798 -9.63664 -9.27859 -9.25980 -8.94844 -8.61009 -8.58229 -8.08876 -6.50579 -3.92394 0.90709 1.01387 2.78216 3.10903 3.23083 3.29896 3.37225 3.41770 3.76528 4.04169 4.09528 4.21504 4.38104 4.42654 4.55653 4.63902 4.69619 4.76574 4.91806 4.97424 5.07161 5.13106 5.18292 5.30719 5.38061 5.54844 5.58657 5.62834 5.77692 5.91965 5.93101 6.02017 6.05391 6.09693 6.10458 6.13192 6.17194 6.45663 6.54337 6.59345 6.79383 7.13888 7.16636 7.47190 7.93846 8.27328 8.46471 8.83012 9.05943 9.40861 9.88811 10.66435 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.001891 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.887938 B =14805.729591 C =14935.993034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.141 3.859 4 H 0.098 0.902 5 N -0.740 5.740 6 C 0.705 3.295 7 O -0.593 6.593 8 N -0.725 5.725 9 C 0.130 3.870 10 C 0.429 3.571 11 O -0.597 6.597 12 N -0.550 5.550 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.140 3.860 22 H 0.115 0.885 23 O -0.550 6.550 24 C -0.111 4.111 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.106 4.106 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.407 0.593 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.273 0.727 41 H 0.374 0.626 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.994 -13.965 -16.838 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.185 4.185 3 C 0.034 3.966 4 H 0.116 0.884 5 N -0.397 5.397 6 C 0.405 3.595 7 O -0.472 6.472 8 N -0.382 5.382 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.484 6.484 12 N -0.185 5.185 13 C -0.433 4.433 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.535 5.535 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.080 3.920 22 H 0.133 0.867 23 O -0.357 6.357 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.137 4.137 27 C -0.137 4.137 28 C -0.136 4.136 29 C -0.124 4.124 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.223 0.777 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.932 -13.361 -16.957 27.436 hybrid contribution -0.420 -0.035 0.869 0.966 sum 16.511 -13.396 -16.088 26.663 Atomic orbital electron populations 1.21731 0.94014 1.00304 1.03684 1.22164 0.98350 0.96124 1.01888 1.21398 0.93287 0.93980 0.87892 0.88432 1.44986 1.16303 1.61457 1.16912 1.15814 0.82061 0.78385 0.83251 1.90911 1.51820 1.65400 1.39037 1.44789 1.18304 1.59940 1.15184 1.20762 0.84220 0.97974 0.96926 1.19786 0.84722 0.85179 0.88884 1.90497 1.40830 1.64336 1.52734 1.41795 1.13729 1.48019 1.14943 1.19777 1.01329 1.31827 0.90411 0.87642 1.25328 0.95110 0.97454 0.99906 1.69623 1.05460 1.43055 1.35362 0.85757 0.78523 0.78466 0.81332 1.19148 1.20631 1.20636 1.21140 0.91500 0.95664 0.83682 0.86731 1.86632 1.72244 1.25029 1.51750 1.20353 1.00563 0.94194 0.96102 1.20933 0.99709 0.94476 0.97601 1.21131 0.99443 0.99897 0.93182 1.21207 0.99722 0.93661 0.99085 1.21170 0.99746 0.95481 0.97183 1.21041 0.98666 0.99792 0.92883 0.91894 0.92132 0.93890 0.90623 0.91883 0.76514 0.75614 0.90079 0.90097 0.77037 0.91663 0.77665 0.85941 0.85886 0.86026 0.85842 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.51 37.16 0.32 -1.38 16 2 C -0.15 -1.35 4.43 -26.73 -0.12 -1.47 16 3 C 0.14 1.41 2.12 -67.93 -0.14 1.27 16 4 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 5 N -0.74 -8.69 5.02 -58.68 -0.29 -8.98 16 6 C 0.71 11.00 7.13 -86.91 -0.62 10.38 16 7 O -0.59 -10.79 13.48 5.29 0.07 -10.72 16 8 N -0.72 -12.07 5.53 -66.42 -0.37 -12.44 16 9 C 0.13 2.40 6.15 -5.20 -0.03 2.37 16 10 C 0.43 9.85 7.85 -10.99 -0.09 9.77 16 11 O -0.60 -15.33 15.24 5.54 0.08 -15.24 16 12 N -0.55 -13.68 5.29 -10.96 -0.06 -13.73 16 13 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 14 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 17 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.14 1.16 3.18 -27.89 -0.09 1.07 16 22 H 0.12 0.96 8.00 -51.93 -0.42 0.55 16 23 O -0.55 -4.57 12.82 -35.23 -0.45 -5.02 16 24 C -0.11 -0.89 4.82 -104.63 -0.50 -1.39 16 25 C -0.11 -0.77 7.28 -39.58 -0.29 -1.06 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 28 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 29 C -0.11 -0.83 9.67 -39.59 -0.38 -1.21 16 30 H 0.06 0.93 5.64 -51.93 -0.29 0.64 16 31 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.60 5.19 -51.93 -0.27 0.33 16 34 H 0.06 0.51 7.00 -51.93 -0.36 0.14 16 35 H 0.40 4.18 8.40 -40.82 -0.34 3.83 16 36 H 0.41 6.70 7.45 -40.82 -0.30 6.40 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.37 2.18 5.77 45.56 0.26 2.44 16 42 H 0.12 0.64 5.82 -52.48 -0.31 0.34 16 43 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.12 0.83 8.04 -52.49 -0.42 0.41 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -32.29 376.46 -8.65 -40.94 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -5.62 Total: 20.32 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.38 Total: 6.87 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.00 Total: -58.39 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.30 Total: -30.99 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.29 -8.65 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.826 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds