Wall clock time and date at job start Tue Mar 31 2020 18:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 6 6 C 1.34777 * 120.00199 * 274.99716 * 5 3 2 7 7 O 1.21583 * 119.99959 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00208 * 179.97438 * 6 5 3 9 9 C 1.46494 * 120.00185 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47352 * 180.02562 * 9 8 6 11 11 O 1.21299 * 119.99992 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00574 * 180.02562 * 10 9 8 13 13 C 1.37089 * 120.00679 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99943 * 359.97438 * 13 12 10 15 15 C 1.38956 * 120.00494 * 179.97438 * 13 12 10 16 16 N 1.31406 * 119.99565 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99923 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47636 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47151 * 120.00195 * 17 15 13 20 20 H 1.48503 * 109.46874 * 239.99777 * 17 15 13 21 21 C 1.52999 * 109.47054 * 185.00114 * 3 2 1 22 22 H 1.09000 * 109.46829 * 185.00206 * 21 3 2 23 23 O 1.42896 * 109.46982 * 304.99842 * 21 3 2 24 24 C 1.50694 * 109.47232 * 65.00372 * 21 3 2 25 25 C 1.38238 * 119.99851 * 279.72941 * 24 21 3 26 26 C 1.38237 * 119.99966 * 179.79085 * 25 24 21 27 27 C 1.38237 * 119.99919 * 0.43404 * 26 25 24 28 28 C 1.38239 * 119.99890 * 359.81583 * 27 26 25 29 29 C 1.38229 * 120.00022 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 34 34 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 35 35 H 0.96999 * 119.99886 * 95.00381 * 5 3 2 36 36 H 0.96999 * 119.99877 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.46851 * 300.00511 * 9 8 6 38 38 H 1.09001 * 109.46890 * 60.00286 * 9 8 6 39 39 H 0.97009 * 119.99726 * 359.97438 * 12 10 9 40 40 H 0.97002 * 119.99981 * 179.97438 * 16 15 13 41 41 H 0.96701 * 114.00163 * 60.01005 * 23 21 3 42 42 H 1.08005 * 120.00182 * 359.97438 * 25 24 21 43 43 H 1.08002 * 120.00280 * 180.27301 * 26 25 24 44 44 H 1.08001 * 119.99760 * 179.84038 * 27 26 25 45 45 H 1.08001 * 119.99529 * 180.02562 * 28 27 26 46 46 H 1.08000 * 119.99826 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3415 2.6319 0.4322 8 7 0.0783 3.2664 2.5189 9 6 -1.2450 3.8821 2.6443 10 6 -1.3918 4.4818 4.0190 11 8 -0.4808 4.4023 4.8158 12 7 -2.5357 5.1057 4.3635 13 6 -2.6695 5.6508 5.6142 14 1 -1.8583 5.5800 6.3237 15 6 -3.8488 6.2945 5.9692 16 7 -4.8355 6.3810 5.1057 17 14 -4.0306 7.0378 7.6732 18 1 -2.7858 6.8071 8.4494 19 1 -4.2762 8.4974 7.5529 20 1 -5.1748 6.3993 8.3722 21 6 3.5648 1.4444 -0.1258 22 1 3.9355 2.4655 -0.0366 23 8 4.1293 0.6405 0.9121 24 6 3.9589 0.8823 -1.4673 25 6 3.9842 -0.4859 -1.6629 26 6 4.3415 -1.0015 -2.8948 27 6 4.6822 -0.1490 -3.9283 28 6 4.6619 1.2191 -3.7311 29 6 4.3004 1.7347 -2.5006 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2719 2.1231 1.9978 36 1 0.6978 3.2920 3.2649 37 1 -1.3543 4.6645 1.8933 38 1 -2.0140 3.1243 2.4941 39 1 -3.2645 5.1690 3.7264 40 1 -5.6589 6.8300 5.3536 41 1 3.8427 -0.2829 0.8942 42 1 3.7219 -1.1521 -0.8543 43 1 4.3570 -2.0703 -3.0490 44 1 4.9639 -0.5519 -4.8900 45 1 4.9277 1.8850 -4.5387 46 1 4.2850 2.8035 -2.3464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680958447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:11 Heat of formation + Delta-G solvation = -119.588984 kcal Electronic energy + Delta-G solvation = -28368.659933 eV Core-core repulsion = 24257.020432 eV Total energy + Delta-G solvation = -4111.639502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62744 -40.67425 -39.97326 -38.36843 -36.28972 -35.80327 -35.20556 -33.44490 -33.18369 -32.47341 -31.69609 -29.59296 -28.32231 -26.33119 -25.23592 -23.56542 -22.72557 -21.85838 -21.45616 -21.29631 -20.11816 -19.56658 -18.73223 -17.58483 -17.44169 -17.14310 -16.75524 -16.58512 -16.51704 -16.13145 -16.10146 -15.77439 -15.41688 -15.16742 -14.91671 -14.76279 -14.45005 -14.10435 -13.92969 -13.72767 -13.70123 -13.54733 -13.35158 -13.07554 -12.90329 -12.59211 -12.48250 -12.44064 -12.11174 -12.00348 -11.86619 -11.73170 -11.57642 -11.31008 -11.09604 -10.54796 -10.29274 -10.09847 -9.87850 -9.79065 -9.58010 -8.50933 -6.00957 0.37252 0.50483 1.35272 1.42676 1.55679 1.63668 1.90456 2.17632 2.28820 2.82276 3.05446 3.16364 3.31213 3.45205 3.60113 3.74975 3.87158 4.07058 4.15001 4.16520 4.22418 4.30241 4.42004 4.45572 4.47834 4.54259 4.62720 4.69602 4.79558 4.97519 5.03410 5.05920 5.15151 5.17195 5.32333 5.39101 5.50120 5.53562 5.58747 5.62585 5.63862 5.92207 5.98806 6.10141 6.48626 6.65281 7.04030 7.06722 7.43804 7.59456 7.95224 8.66250 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.001891 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.887938 B =14805.729591 C =14935.993034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.142 3.858 4 H 0.077 0.923 5 N -0.725 5.725 6 C 0.706 3.294 7 O -0.619 6.619 8 N -0.727 5.727 9 C 0.144 3.856 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.086 0.914 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.998 3.002 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.271 1.271 21 C 0.154 3.846 22 H 0.111 0.889 23 O -0.557 6.557 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.123 4.123 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.386 0.614 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.936 -15.120 -17.209 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C 0.036 3.964 4 H 0.095 0.905 5 N -0.381 5.381 6 C 0.406 3.594 7 O -0.500 6.500 8 N -0.384 5.384 9 C 0.016 3.984 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.195 5.195 13 C -0.465 4.465 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.196 1.196 20 H -0.196 1.196 21 C 0.094 3.906 22 H 0.129 0.871 23 O -0.365 6.365 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.147 4.147 29 C -0.141 4.141 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.246 0.754 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.237 0.763 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 17.903 -14.544 -17.350 28.863 hybrid contribution -0.656 0.260 0.896 1.141 sum 17.246 -14.284 -16.454 27.788 Atomic orbital electron populations 1.21664 0.96103 1.00421 1.01253 1.22131 0.96238 0.95718 1.03687 1.21499 0.94641 0.94089 0.86144 0.90487 1.44916 1.14958 1.60367 1.17851 1.15882 0.82861 0.78289 0.82413 1.90898 1.52942 1.66409 1.39767 1.44719 1.17625 1.60344 1.15739 1.20539 0.85644 0.98302 0.93946 1.20453 0.83593 0.83811 0.90088 1.90473 1.41574 1.65001 1.54165 1.41840 1.14462 1.48677 1.14564 1.19772 1.01616 1.33830 0.91326 0.89599 1.26137 0.94365 0.97224 1.03508 1.69687 1.05829 1.43241 1.36878 0.84803 0.78376 0.77953 0.76787 1.19453 1.19644 1.19636 1.20913 0.89738 0.95767 0.84189 0.87110 1.86621 1.72232 1.25969 1.51680 1.20358 1.01539 0.94841 0.95748 1.21189 0.99464 0.94283 0.98454 1.21454 0.98856 1.01069 0.92957 1.21531 0.99157 0.93579 1.00064 1.21423 0.99699 0.96213 0.97341 1.21240 0.99198 1.00225 0.93429 0.94716 0.94096 0.92479 0.88727 0.90048 0.75478 0.75440 0.89171 0.89204 0.76717 0.91089 0.76316 0.84133 0.83884 0.84195 0.84507 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.51 71.98 0.61 -2.62 16 2 C -0.14 -2.33 4.43 30.60 0.14 -2.19 16 3 C 0.14 2.73 2.12 44.99 0.10 2.82 16 4 H 0.08 1.85 7.58 -2.39 -0.02 1.84 16 5 N -0.72 -16.51 5.02 -457.81 -2.30 -18.81 16 6 C 0.71 21.89 7.13 179.05 1.28 23.17 16 7 O -0.62 -22.69 13.48 -3.98 -0.05 -22.75 16 8 N -0.73 -24.08 5.53 -482.31 -2.67 -26.74 16 9 C 0.14 5.35 6.15 85.63 0.53 5.88 16 10 C 0.43 20.16 7.85 87.66 0.69 20.85 16 11 O -0.62 -32.46 15.24 -3.09 -0.05 -32.51 16 12 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 13 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 14 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 15 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 16 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 17 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 C 0.15 2.36 3.18 29.85 0.09 2.46 16 22 H 0.11 1.78 8.00 -2.39 -0.02 1.76 16 23 O -0.56 -8.11 12.82 -148.98 -1.91 -10.02 16 24 C -0.12 -1.81 4.82 -19.87 -0.10 -1.91 16 25 C -0.12 -1.38 7.28 22.27 0.16 -1.21 16 26 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 27 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 28 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 29 C -0.12 -1.83 9.67 22.27 0.22 -1.61 16 30 H 0.03 1.01 5.64 -2.39 -0.01 1.00 16 31 H 0.04 1.10 7.84 -2.38 -0.02 1.09 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.26 5.19 -2.39 -0.01 1.25 16 34 H 0.08 1.09 7.00 -2.39 -0.02 1.07 16 35 H 0.41 8.07 8.40 -92.71 -0.78 7.29 16 36 H 0.41 13.38 7.45 -92.71 -0.69 12.69 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 40 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.39 3.43 5.77 -74.06 -0.43 3.00 16 42 H 0.14 1.04 5.82 -2.91 -0.02 1.02 16 43 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 45 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 46 H 0.13 1.69 8.04 -2.91 -0.02 1.66 16 Total: -1.00 -69.42 376.46 -2.19 -71.61 By element: Atomic # 1 Polarization: 51.49 SS G_CDS: -1.57 Total: 49.92 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 5.66 Total: 23.85 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.30 Total: -124.11 kcal Atomic # 8 Polarization: -63.27 SS G_CDS: -2.01 Total: -65.28 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.42 -2.19 -71.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.979 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds