Wall clock time and date at job start Tue Mar 31 2020 18:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99993 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99788 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00457 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47126 * 119.99929 * 17 15 13 20 20 H 1.48496 * 109.47151 * 239.99653 * 17 15 13 21 21 C 1.52995 * 109.47295 * 185.00367 * 3 2 1 22 22 H 1.09007 * 109.46938 * 65.00437 * 21 3 2 23 23 O 1.42897 * 109.47309 * 305.00101 * 21 3 2 24 24 C 1.50701 * 109.47091 * 184.99892 * 21 3 2 25 25 C 1.38233 * 119.99687 * 84.73133 * 24 21 3 26 26 C 1.38235 * 119.99919 * 179.81096 * 25 24 21 27 27 C 1.38233 * 120.00037 * 0.39397 * 26 25 24 28 28 C 1.38240 * 119.99887 * 359.85766 * 27 26 25 29 29 C 1.38232 * 119.99975 * 359.95594 * 28 27 26 30 30 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 31 31 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 32 32 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 34 34 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 35 35 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 36 36 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 37 37 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 38 38 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 39 39 H 0.97003 * 119.99587 * 0.02562 * 12 10 9 40 40 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 41 41 H 0.96693 * 114.00253 * 300.00476 * 23 21 3 42 42 H 1.08006 * 120.00056 * 359.97438 * 25 24 21 43 43 H 1.08006 * 119.99885 * 180.22594 * 26 25 24 44 44 H 1.07995 * 120.00296 * 179.83249 * 27 26 25 45 45 H 1.08000 * 119.99820 * 179.97438 * 28 27 26 46 46 H 1.08001 * 120.00194 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 8 -0.4862 4.3888 4.8212 12 7 -2.5435 5.0870 4.3710 13 6 -2.6788 5.6282 5.6233 14 1 -1.8675 5.5576 6.3326 15 6 -3.8601 6.2666 5.9803 16 7 -4.8476 6.3521 5.1174 17 14 -4.0448 7.0034 7.6869 18 1 -2.7993 6.7742 8.4624 19 1 -4.2952 8.4626 7.5716 20 1 -5.1869 6.3588 8.3834 21 6 3.5648 1.4444 -0.1258 22 1 3.8498 1.0378 -1.0962 23 8 4.1294 0.6404 0.9119 24 6 4.0773 2.8562 -0.0026 25 6 4.3069 3.4016 1.2467 26 6 4.7807 4.6953 1.3596 27 6 5.0172 5.4464 0.2235 28 6 4.7827 4.9028 -1.0257 29 6 4.3125 3.6078 -1.1387 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8898 35 1 2.2721 2.1231 1.9978 36 1 0.6963 3.2876 3.2666 37 1 -1.3609 4.6570 1.8993 38 1 -2.0152 3.1130 2.4959 39 1 -3.2723 5.1500 3.7339 40 1 -5.6721 6.7981 5.3665 41 1 3.9164 0.9443 1.8048 42 1 4.1186 2.8160 2.1344 43 1 4.9635 5.1201 2.3356 44 1 5.3848 6.4580 0.3118 45 1 4.9671 5.4898 -1.9133 46 1 4.1289 3.1832 -2.1146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680958448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:14 Heat of formation + Delta-G solvation = -94.976161 kcal Electronic energy + Delta-G solvation = -29053.572249 eV Core-core repulsion = 24943.000039 eV Total energy + Delta-G solvation = -4110.572209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72396 -39.48410 -38.31565 -37.53000 -35.04077 -34.33683 -33.68028 -32.19981 -31.85452 -31.36146 -31.04564 -28.39110 -27.19059 -24.60823 -24.08281 -22.89415 -21.54199 -21.30356 -20.46238 -19.59188 -18.69733 -18.10458 -17.75903 -16.86263 -16.15581 -15.79740 -15.67788 -15.53856 -15.18683 -14.85212 -14.51856 -14.38301 -14.31254 -13.96436 -13.94046 -13.58753 -13.43979 -13.30290 -13.09471 -12.59562 -12.19996 -12.18493 -11.96716 -11.81808 -11.64310 -11.62003 -11.35254 -11.23006 -11.15158 -10.82682 -10.41882 -10.38112 -10.33452 -9.96995 -9.65360 -9.19989 -9.07036 -8.94406 -8.63147 -8.61967 -8.10610 -6.52166 -3.94184 1.07211 1.16640 2.74971 3.09443 3.21777 3.28356 3.40447 3.49134 3.74623 4.01204 4.07813 4.17147 4.41358 4.52551 4.56092 4.73959 4.87282 4.89484 5.00072 5.04164 5.12181 5.16695 5.24917 5.37789 5.44939 5.63270 5.70085 5.76428 5.85353 5.90987 5.99874 6.00364 6.07628 6.17910 6.20450 6.24383 6.29414 6.48304 6.52108 6.73612 6.76590 7.02920 7.14056 7.45454 7.91963 8.20827 8.44496 8.79858 9.04122 9.39012 9.86749 10.64817 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002657 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.453100 B =10537.336170 C =11721.731995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.139 3.861 4 H 0.098 0.902 5 N -0.742 5.742 6 C 0.708 3.292 7 O -0.589 6.589 8 N -0.725 5.725 9 C 0.130 3.870 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.141 3.859 22 H 0.121 0.879 23 O -0.548 6.548 24 C -0.113 4.113 25 C -0.109 4.109 26 C -0.112 4.112 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.110 4.110 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.405 0.595 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.371 0.629 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.305 -7.865 -12.376 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.033 3.967 4 H 0.116 0.884 5 N -0.399 5.399 6 C 0.408 3.592 7 O -0.468 6.468 8 N -0.382 5.382 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.081 3.919 22 H 0.139 0.861 23 O -0.353 6.353 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.222 0.778 36 H 0.242 0.758 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.220 0.780 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 17.190 -8.167 -13.179 23.150 hybrid contribution -0.374 0.971 1.604 1.912 sum 16.817 -7.196 -11.576 21.647 Atomic orbital electron populations 1.21791 0.94535 1.00274 1.03504 1.21859 0.97114 0.95162 1.02453 1.21555 0.93269 0.94026 0.87891 0.88366 1.45046 1.16283 1.61912 1.16673 1.15747 0.81929 0.78278 0.83246 1.90916 1.51709 1.65149 1.39015 1.44769 1.18129 1.60300 1.14986 1.20763 0.84124 0.98064 0.96917 1.19774 0.84725 0.85197 0.88862 1.90488 1.40852 1.64310 1.52838 1.41795 1.13632 1.48144 1.14848 1.19770 1.01205 1.32120 0.90282 0.87654 1.25324 0.95088 0.97425 0.99896 1.69620 1.05368 1.43086 1.35386 0.85766 0.78540 0.78477 0.81353 1.19143 1.20615 1.20616 1.21231 0.90658 0.87009 0.92977 0.86138 1.86645 1.76470 1.54849 1.17337 1.20417 1.00150 0.96729 0.94005 1.20783 0.99772 0.95741 0.96375 1.21156 0.98704 0.94220 0.98915 1.21199 0.99989 0.99880 0.92664 1.21144 0.99285 0.95371 0.97671 1.20937 0.99393 0.94606 0.97875 0.92045 0.92240 0.93892 0.91365 0.91388 0.77769 0.75800 0.90118 0.90083 0.77035 0.91641 0.78036 0.86648 0.85743 0.86026 0.85985 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.51 37.16 0.32 -1.44 16 2 C -0.13 -1.25 5.33 -26.73 -0.14 -1.39 16 3 C 0.14 1.37 2.15 -67.93 -0.15 1.22 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 N -0.74 -8.19 4.22 -58.67 -0.25 -8.43 16 6 C 0.71 10.78 7.13 -86.92 -0.62 10.16 16 7 O -0.59 -10.62 13.48 5.28 0.07 -10.55 16 8 N -0.72 -11.75 5.53 -66.41 -0.37 -12.12 16 9 C 0.13 2.38 6.15 -5.19 -0.03 2.35 16 10 C 0.43 9.72 7.85 -10.99 -0.09 9.64 16 11 O -0.60 -15.06 15.24 5.54 0.08 -14.97 16 12 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 14 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 17 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.14 1.15 3.12 -27.88 -0.09 1.06 16 22 H 0.12 0.85 8.05 -51.92 -0.42 0.43 16 23 O -0.55 -4.55 12.36 -35.23 -0.44 -4.99 16 24 C -0.11 -1.03 4.78 -104.62 -0.50 -1.53 16 25 C -0.11 -1.00 8.17 -39.58 -0.32 -1.32 16 26 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 28 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 29 C -0.11 -0.99 9.68 -39.58 -0.38 -1.37 16 30 H 0.06 0.90 5.65 -51.93 -0.29 0.61 16 31 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 35 H 0.39 3.49 5.62 -40.82 -0.23 3.26 16 36 H 0.40 6.42 7.45 -40.82 -0.30 6.11 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.37 2.29 6.26 45.56 0.29 2.57 16 42 H 0.12 0.82 5.62 -52.48 -0.30 0.53 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -32.26 378.20 -8.66 -40.92 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -5.67 Total: 20.55 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -3.44 Total: 5.16 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.05 Total: -57.24 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.28 Total: -30.51 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.26 -8.66 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.055 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds