Wall clock time and date at job start Tue Mar 31 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99993 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99788 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00457 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47041 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47126 * 119.99929 * 17 15 13 20 20 H 1.48496 * 109.47151 * 239.99653 * 17 15 13 21 21 C 1.52995 * 109.47295 * 185.00367 * 3 2 1 22 22 H 1.09007 * 109.46938 * 65.00437 * 21 3 2 23 23 O 1.42897 * 109.47309 * 305.00101 * 21 3 2 24 24 C 1.50701 * 109.47091 * 184.99892 * 21 3 2 25 25 C 1.38233 * 119.99687 * 84.73133 * 24 21 3 26 26 C 1.38235 * 119.99919 * 179.81096 * 25 24 21 27 27 C 1.38233 * 120.00037 * 0.39397 * 26 25 24 28 28 C 1.38240 * 119.99887 * 359.85766 * 27 26 25 29 29 C 1.38232 * 119.99975 * 359.95594 * 28 27 26 30 30 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 31 31 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 32 32 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 34 34 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 35 35 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 36 36 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 37 37 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 38 38 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 39 39 H 0.97003 * 119.99587 * 0.02562 * 12 10 9 40 40 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 41 41 H 0.96693 * 114.00253 * 300.00476 * 23 21 3 42 42 H 1.08006 * 120.00056 * 359.97438 * 25 24 21 43 43 H 1.08006 * 119.99885 * 180.22594 * 26 25 24 44 44 H 1.07995 * 120.00296 * 179.83249 * 27 26 25 45 45 H 1.08000 * 119.99820 * 179.97438 * 28 27 26 46 46 H 1.08001 * 120.00194 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 8 -0.4862 4.3888 4.8212 12 7 -2.5435 5.0870 4.3710 13 6 -2.6788 5.6282 5.6233 14 1 -1.8675 5.5576 6.3326 15 6 -3.8601 6.2666 5.9803 16 7 -4.8476 6.3521 5.1174 17 14 -4.0448 7.0034 7.6869 18 1 -2.7993 6.7742 8.4624 19 1 -4.2952 8.4626 7.5716 20 1 -5.1869 6.3588 8.3834 21 6 3.5648 1.4444 -0.1258 22 1 3.8498 1.0378 -1.0962 23 8 4.1294 0.6404 0.9119 24 6 4.0773 2.8562 -0.0026 25 6 4.3069 3.4016 1.2467 26 6 4.7807 4.6953 1.3596 27 6 5.0172 5.4464 0.2235 28 6 4.7827 4.9028 -1.0257 29 6 4.3125 3.6078 -1.1387 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8898 35 1 2.2721 2.1231 1.9978 36 1 0.6963 3.2876 3.2666 37 1 -1.3609 4.6570 1.8993 38 1 -2.0152 3.1130 2.4959 39 1 -3.2723 5.1500 3.7339 40 1 -5.6721 6.7981 5.3665 41 1 3.9164 0.9443 1.8048 42 1 4.1186 2.8160 2.1344 43 1 4.9635 5.1201 2.3356 44 1 5.3848 6.4580 0.3118 45 1 4.9671 5.4898 -1.9133 46 1 4.1289 3.1832 -2.1146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680958448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:13 Heat of formation + Delta-G solvation = -118.966263 kcal Electronic energy + Delta-G solvation = -29054.612538 eV Core-core repulsion = 24943.000039 eV Total energy + Delta-G solvation = -4111.612498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.68257 -40.57554 -39.91627 -38.37744 -36.28924 -35.80267 -35.19577 -33.42865 -33.12665 -32.54271 -31.72064 -29.50236 -28.49562 -26.36179 -24.98081 -23.58702 -22.53083 -22.08341 -21.47616 -21.30332 -20.14275 -19.75268 -18.60342 -17.79779 -17.44659 -17.00809 -16.81519 -16.65032 -16.33017 -16.09797 -15.98659 -15.83145 -15.40439 -15.08528 -14.93407 -14.65614 -14.47005 -14.22515 -13.92789 -13.85840 -13.58725 -13.54189 -13.34155 -12.92568 -12.88506 -12.66949 -12.44802 -12.43629 -12.11349 -12.08802 -11.92740 -11.71960 -11.57350 -11.26717 -11.08577 -10.54270 -10.26587 -10.09360 -9.88233 -9.76559 -9.63590 -8.50744 -6.00808 0.38786 0.48803 1.35246 1.42667 1.55301 1.62574 1.90720 2.20032 2.28670 2.80651 3.03723 3.16680 3.29381 3.42028 3.51972 3.80978 3.92264 4.10553 4.19186 4.21835 4.24674 4.28092 4.43581 4.44148 4.47565 4.57686 4.60953 4.69179 4.83192 4.97269 5.06664 5.10300 5.12203 5.24338 5.33474 5.39471 5.51851 5.53663 5.55276 5.61617 5.63243 5.91206 5.95144 6.08512 6.48623 6.59085 7.03858 7.04201 7.44019 7.59732 7.95154 8.66463 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.002657 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.453100 B =10537.336170 C =11721.731995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.141 3.859 4 H 0.083 0.917 5 N -0.725 5.725 6 C 0.708 3.292 7 O -0.617 6.617 8 N -0.726 5.726 9 C 0.145 3.855 10 C 0.434 3.566 11 O -0.623 6.623 12 N -0.560 5.560 13 C -0.335 4.335 14 H 0.086 0.914 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.155 3.845 22 H 0.138 0.862 23 O -0.553 6.553 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.121 4.121 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.398 0.602 40 H 0.279 0.721 41 H 0.380 0.620 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.219 -8.452 -12.687 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.036 3.964 4 H 0.101 0.899 5 N -0.382 5.382 6 C 0.408 3.592 7 O -0.498 6.498 8 N -0.384 5.384 9 C 0.016 3.984 10 C 0.221 3.779 11 O -0.511 6.511 12 N -0.196 5.196 13 C -0.465 4.465 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.557 5.557 17 Si 0.819 3.181 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.197 1.197 21 C 0.095 3.905 22 H 0.156 0.844 23 O -0.359 6.359 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.149 4.149 27 C -0.151 4.151 28 C -0.146 4.146 29 C -0.139 4.139 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.236 0.764 36 H 0.245 0.755 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.232 0.768 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.157 0.843 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.140 -8.775 -13.500 24.255 hybrid contribution -0.602 1.122 1.647 2.082 sum 17.538 -7.653 -11.853 22.509 Atomic orbital electron populations 1.21721 0.96409 1.00225 1.01366 1.21828 0.95223 0.95167 1.03760 1.21640 0.94579 0.93709 0.86513 0.89887 1.44928 1.14941 1.60672 1.17650 1.15824 0.82784 0.78176 0.82384 1.90902 1.52906 1.66212 1.39781 1.44686 1.17387 1.60686 1.15594 1.20525 0.85648 0.98336 0.93914 1.20432 0.83600 0.83782 0.90060 1.90465 1.41522 1.64875 1.54209 1.41843 1.14384 1.48876 1.14462 1.19767 1.01471 1.34047 0.91191 0.89557 1.26121 0.94363 0.97211 1.03456 1.69685 1.05747 1.43348 1.36910 0.84822 0.78403 0.77961 0.76864 1.19366 1.19678 1.19691 1.21152 0.88882 0.86686 0.93798 0.84429 1.86640 1.76404 1.54906 1.17975 1.20593 1.00376 0.97233 0.94118 1.21048 0.99697 0.95897 0.97185 1.21400 0.99245 0.94744 0.99479 1.21475 1.00093 1.00619 0.92917 1.21439 0.99139 0.95765 0.98243 1.21263 0.99049 0.94749 0.98794 0.94747 0.93724 0.92894 0.89235 0.90808 0.76369 0.75509 0.89412 0.89257 0.76768 0.91106 0.77026 0.85109 0.85103 0.84882 0.84334 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.51 71.98 0.61 -2.69 16 2 C -0.12 -2.12 5.33 30.60 0.16 -1.96 16 3 C 0.14 2.54 2.15 44.99 0.10 2.64 16 4 H 0.08 1.83 7.58 -2.39 -0.02 1.81 16 5 N -0.72 -15.10 4.22 -457.80 -1.93 -17.03 16 6 C 0.71 21.12 7.13 179.06 1.28 22.40 16 7 O -0.62 -22.10 13.48 -4.01 -0.05 -22.15 16 8 N -0.73 -23.21 5.53 -482.29 -2.67 -25.87 16 9 C 0.14 5.27 6.15 85.63 0.53 5.80 16 10 C 0.43 19.85 7.85 87.66 0.69 20.54 16 11 O -0.62 -31.64 15.24 -3.08 -0.05 -31.69 16 12 N -0.56 -28.01 5.29 -306.98 -1.62 -29.64 16 13 C -0.34 -18.39 9.68 84.04 0.81 -17.58 16 14 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -48.66 13.05 21.66 0.28 -48.37 16 17 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 C 0.15 2.16 3.12 29.85 0.09 2.26 16 22 H 0.14 1.51 8.05 -2.38 -0.02 1.49 16 23 O -0.55 -7.74 12.36 -148.98 -1.84 -9.58 16 24 C -0.12 -2.04 4.78 -19.87 -0.09 -2.13 16 25 C -0.12 -2.05 8.17 22.27 0.18 -1.87 16 26 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 27 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 28 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 29 C -0.12 -1.98 9.68 22.27 0.22 -1.76 16 30 H 0.03 0.99 5.65 -2.38 -0.01 0.98 16 31 H 0.04 1.17 7.84 -2.39 -0.02 1.15 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.25 7.73 -2.39 -0.02 1.23 16 35 H 0.40 6.55 5.62 -92.71 -0.52 6.03 16 36 H 0.41 12.70 7.45 -92.71 -0.69 12.01 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 40 H 0.28 13.84 8.31 -92.72 -0.77 13.07 16 41 H 0.38 3.75 6.26 -74.06 -0.46 3.28 16 42 H 0.13 1.66 5.62 -2.91 -0.02 1.64 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -68.86 378.20 -1.50 -70.35 By element: Atomic # 1 Polarization: 52.43 SS G_CDS: -1.35 Total: 51.07 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.71 Total: 19.29 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.94 Total: -120.91 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -1.94 Total: -63.42 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -68.86 -1.50 -70.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680958448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.614 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds