Wall clock time and date at job start Tue Mar 31 2020 19:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 O 1.42903 * 109.47137 * 180.02562 * 9 7 6 11 11 C 1.35713 * 117.00148 * 180.02562 * 10 9 7 12 12 C 1.38992 * 119.90658 * 359.72284 * 11 10 9 13 13 C 1.37707 * 120.08256 * 179.72355 * 12 11 10 14 14 C 1.39726 * 119.91018 * 0.57473 * 13 12 11 15 15 C 1.47611 * 120.09014 * 179.67994 * 14 13 12 16 16 N 1.34774 * 119.99373 * 0.02562 * 15 14 13 17 17 O 1.21580 * 120.00553 * 180.02562 * 15 14 13 18 18 C 1.39734 * 119.82892 * 359.69775 * 14 13 12 19 19 C 1.37703 * 119.90911 * 0.02562 * 18 14 13 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.07996 * 119.96385 * 0.02562 * 12 11 10 40 40 H 1.08003 * 120.04202 * 180.27764 * 13 12 11 41 41 H 0.97003 * 120.00441 * 359.97438 * 16 15 14 42 42 H 0.97002 * 119.99759 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.04961 * 179.97438 * 18 14 13 44 44 H 1.07998 * 119.95645 * 179.97438 * 19 18 14 45 45 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 8 7.3222 4.4767 -0.0819 11 6 7.9464 5.6783 0.0083 12 6 7.1996 6.8345 0.2016 13 6 7.8296 8.0550 0.2993 14 6 9.2207 8.1316 0.1917 15 6 9.8996 9.4387 0.2888 16 7 9.1776 10.5602 0.4819 17 8 11.1100 9.5036 0.1945 18 6 9.9675 6.9676 -0.0083 19 6 9.3304 5.7502 -0.0992 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 6.1241 6.7750 0.2803 40 1 7.2490 8.9524 0.4541 41 1 8.2118 10.5086 0.5568 42 1 9.6236 11.4193 0.5453 43 1 11.0428 7.0228 -0.0924 44 1 9.9068 4.8502 -0.2543 45 1 2.2720 2.1231 1.9978 46 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698621369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:19 Heat of formation + Delta-G solvation = -80.016025 kcal Electronic energy + Delta-G solvation = -27688.606629 eV Core-core repulsion = 23578.683140 eV Total energy + Delta-G solvation = -4109.923489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84191 -39.91402 -39.10587 -37.32130 -36.77497 -34.17604 -34.00753 -32.71941 -31.48408 -30.73414 -29.84775 -29.00684 -27.19828 -24.09853 -23.69958 -23.15030 -22.47605 -20.92698 -20.51992 -19.98253 -18.95312 -18.05660 -17.69863 -17.38943 -16.90485 -16.59814 -15.94281 -15.42698 -15.37986 -15.20652 -15.01421 -14.59138 -14.35569 -14.24350 -13.86057 -13.71654 -13.61381 -13.27914 -13.09349 -13.05876 -12.64030 -12.60584 -12.11508 -11.73441 -11.34691 -11.30270 -11.08872 -10.88785 -10.65773 -10.45116 -10.41541 -10.20021 -10.08400 -9.97856 -9.79828 -9.46371 -9.31025 -9.06254 -8.90904 -8.61241 -7.21164 -6.22155 -3.24554 0.55276 0.95906 2.39757 2.53454 2.60585 3.16370 3.41888 3.44390 3.51597 3.59988 3.62219 4.26308 4.45642 4.53520 4.54181 4.60619 4.78846 4.83223 4.87729 5.05193 5.20758 5.24049 5.27043 5.43590 5.55477 5.72304 5.73090 5.80658 5.81601 5.87410 5.96006 5.97010 6.22117 6.26096 6.36141 6.41319 6.41924 6.47084 6.65435 6.85672 6.94196 6.97417 7.13596 7.61724 7.68227 7.90215 8.25420 8.61395 9.05636 9.92552 10.07312 11.24660 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.002206 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.957976 B =12687.321150 C =14497.681338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.056 0.944 5 C 0.115 3.885 6 N -0.708 5.708 7 C 0.513 3.487 8 O -0.529 6.529 9 C 0.038 3.962 10 O -0.283 6.283 11 C 0.164 3.836 12 C -0.220 4.220 13 C -0.040 4.040 14 C -0.188 4.188 15 C 0.569 3.431 16 N -0.853 5.853 17 O -0.546 6.546 18 C -0.017 4.017 19 C -0.158 4.158 20 N -0.733 5.733 21 C -0.329 4.329 22 H 0.068 0.932 23 C -0.042 4.042 24 N -0.941 5.941 25 Si 1.075 2.925 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.401 0.599 42 H 0.404 0.596 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.368 0.632 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 9.399 -8.559 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.009 4.009 6 N -0.362 5.362 7 C 0.297 3.703 8 O -0.406 6.406 9 C -0.041 4.041 10 O -0.194 6.194 11 C 0.117 3.883 12 C -0.239 4.239 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.356 3.644 16 N -0.417 5.417 17 O -0.424 6.424 18 C -0.036 4.036 19 C -0.177 4.177 20 N -0.377 5.377 21 C -0.460 4.460 22 H 0.086 0.914 23 C -0.241 4.241 24 N -0.586 5.586 25 Si 0.906 3.094 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.222 1.222 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.230 0.770 42 H 0.235 0.765 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.201 0.799 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.946 9.235 -7.934 16.372 hybrid contribution 0.149 -0.077 -0.617 0.640 sum 11.095 9.157 -8.552 16.736 Atomic orbital electron populations 1.21762 0.95500 0.99697 1.03360 1.22057 0.97183 0.98136 1.00065 1.20513 0.89577 0.92920 0.91152 0.92595 1.21746 0.95730 0.81927 1.01481 1.45815 1.06307 1.11282 1.72774 1.19872 0.83034 0.89652 0.77776 1.90735 1.55834 1.45797 1.48191 1.22605 0.80047 0.97196 1.04235 1.86143 1.20043 1.27079 1.86134 1.19394 0.92460 0.84230 0.92200 1.21274 1.00864 0.92245 1.09490 1.21044 0.93042 0.97474 0.94370 1.19740 0.93760 0.93728 1.11877 1.18175 0.86620 0.84398 0.75163 1.43762 1.11588 1.09572 1.76811 1.90817 1.13900 1.87163 1.50542 1.21068 1.00605 0.89903 0.92004 1.20462 0.91253 0.99069 1.06910 1.42475 1.16862 1.67057 1.11269 1.19991 0.92636 1.32323 1.01013 0.91416 1.25709 1.05667 1.00429 0.92246 1.70900 1.08447 1.47339 1.31925 0.83297 0.74357 0.75902 0.75817 1.21126 1.22295 1.22245 0.89613 0.94064 0.94807 0.93695 0.92639 0.91667 0.91457 0.75241 0.88647 0.88294 0.84355 0.85235 0.76960 0.76492 0.83865 0.84072 0.79885 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.18 37.15 0.34 -2.17 16 2 C -0.13 -2.20 5.61 -26.73 -0.15 -2.35 16 3 C 0.17 2.91 2.59 -67.93 -0.18 2.73 16 4 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 1.80 5.23 -4.04 -0.02 1.78 16 6 N -0.71 -10.36 5.39 -60.29 -0.32 -10.69 16 7 C 0.51 7.70 7.91 -10.99 -0.09 7.61 16 8 O -0.53 -10.01 16.50 -14.36 -0.24 -10.25 16 9 C 0.04 0.43 5.21 36.01 0.19 0.62 16 10 O -0.28 -3.72 9.66 -38.75 -0.37 -4.09 16 11 C 0.16 1.82 6.70 -39.02 -0.26 1.56 16 12 C -0.22 -1.97 9.01 -39.50 -0.36 -2.33 16 13 C -0.04 -0.32 9.53 -39.22 -0.37 -0.69 16 14 C -0.19 -1.79 5.87 -104.96 -0.62 -2.40 16 15 C 0.57 5.67 8.04 -12.44 -0.10 5.57 16 16 N -0.85 -4.91 8.82 30.47 0.27 -4.65 16 17 O -0.55 -7.52 17.18 5.30 0.09 -7.43 16 18 C -0.02 -0.17 9.58 -39.22 -0.38 -0.55 16 19 C -0.16 -1.65 9.97 -39.50 -0.39 -2.04 16 20 N -0.73 -15.56 4.50 -53.43 -0.24 -15.80 16 21 C -0.33 -7.97 7.75 -15.06 -0.12 -8.09 16 22 H 0.07 1.63 7.32 -52.48 -0.38 1.25 16 23 C -0.04 -1.11 5.50 -17.43 -0.10 -1.20 16 24 N -0.94 -26.66 13.70 55.49 0.76 -25.90 16 25 Si 1.08 23.82 29.92 -169.99 -5.09 18.73 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.30 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.30 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.09 1.77 5.99 -51.93 -0.31 1.46 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.41 5.85 8.14 -40.82 -0.33 5.52 16 37 H 0.10 0.81 7.64 -51.93 -0.40 0.42 16 38 H 0.10 0.97 7.66 -51.93 -0.40 0.57 16 39 H 0.14 0.99 6.28 -52.49 -0.33 0.66 16 40 H 0.13 0.57 6.39 -52.48 -0.34 0.24 16 41 H 0.40 1.24 6.85 -40.82 -0.28 0.96 16 42 H 0.40 1.83 8.93 -40.82 -0.36 1.46 16 43 H 0.14 1.35 7.64 -52.48 -0.40 0.95 16 44 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.37 8.35 6.63 -40.82 -0.27 8.08 16 46 H 0.26 7.13 6.77 -40.82 -0.28 6.85 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -33.73 385.92 -8.18 -41.90 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.25 Total: 14.31 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.60 Total: -1.96 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.46 Total: -57.03 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.52 Total: -21.77 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.73 -8.18 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698621369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.114 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds