Wall clock time and date at job start Tue Mar 31 2020 19:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 O 1.42903 * 109.47137 * 180.02562 * 9 7 6 11 11 C 1.35713 * 117.00148 * 180.02562 * 10 9 7 12 12 C 1.38992 * 119.90658 * 359.72284 * 11 10 9 13 13 C 1.37707 * 120.08256 * 179.72355 * 12 11 10 14 14 C 1.39726 * 119.91018 * 0.57473 * 13 12 11 15 15 C 1.47611 * 120.09014 * 179.67994 * 14 13 12 16 16 N 1.34774 * 119.99373 * 0.02562 * 15 14 13 17 17 O 1.21580 * 120.00553 * 180.02562 * 15 14 13 18 18 C 1.39734 * 119.82892 * 359.69775 * 14 13 12 19 19 C 1.37703 * 119.90911 * 0.02562 * 18 14 13 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.07996 * 119.96385 * 0.02562 * 12 11 10 40 40 H 1.08003 * 120.04202 * 180.27764 * 13 12 11 41 41 H 0.97003 * 120.00441 * 359.97438 * 16 15 14 42 42 H 0.97002 * 119.99759 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.04961 * 179.97438 * 18 14 13 44 44 H 1.07998 * 119.95645 * 179.97438 * 19 18 14 45 45 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 8 7.3222 4.4767 -0.0819 11 6 7.9464 5.6783 0.0083 12 6 7.1996 6.8345 0.2016 13 6 7.8296 8.0550 0.2993 14 6 9.2207 8.1316 0.1917 15 6 9.8996 9.4387 0.2888 16 7 9.1776 10.5602 0.4819 17 8 11.1100 9.5036 0.1945 18 6 9.9675 6.9676 -0.0083 19 6 9.3304 5.7502 -0.0992 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 6.1241 6.7750 0.2803 40 1 7.2490 8.9524 0.4541 41 1 8.2118 10.5086 0.5568 42 1 9.6236 11.4193 0.5453 43 1 11.0428 7.0228 -0.0924 44 1 9.9068 4.8502 -0.2543 45 1 2.2720 2.1231 1.9978 46 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698621369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:19 Heat of formation + Delta-G solvation = -105.115561 kcal Electronic energy + Delta-G solvation = -27689.695026 eV Core-core repulsion = 23578.683140 eV Total energy + Delta-G solvation = -4111.011887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67909 -40.88664 -40.10822 -38.49296 -37.91830 -35.46971 -34.86314 -34.34992 -32.20937 -31.60532 -31.28641 -30.24190 -28.45385 -25.47847 -24.78800 -24.27058 -23.56798 -21.87742 -21.66382 -21.22630 -19.69655 -19.43206 -18.79621 -18.48757 -17.73950 -17.55070 -17.07535 -16.67896 -16.48911 -16.09885 -15.93392 -15.85219 -15.58806 -15.41719 -15.14470 -14.82945 -14.67205 -14.43276 -14.30445 -13.99029 -13.75852 -13.46620 -13.42015 -13.19981 -12.72068 -12.55656 -12.17578 -12.12068 -11.99425 -11.98303 -11.81527 -11.53651 -11.23750 -11.16626 -11.05883 -10.83394 -10.72849 -10.17806 -10.16070 -9.39035 -9.05345 -8.23593 -5.19822 -0.19805 0.25919 1.41349 1.46793 1.65003 1.72284 1.78315 1.87870 2.53009 2.60609 2.77343 2.78579 3.46930 3.52354 3.70200 3.75678 3.80267 3.86426 3.91501 3.97643 4.03707 4.15593 4.28187 4.35711 4.41126 4.48998 4.50119 4.66853 4.78470 4.90045 5.01027 5.02663 5.05461 5.14754 5.15470 5.26421 5.35456 5.48060 5.54451 5.65662 5.76006 5.87367 6.15720 6.41257 6.44890 6.61538 7.07957 7.17440 7.28422 8.07479 8.19916 9.26777 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.002206 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.957976 B =12687.321150 C =14497.681338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.171 3.829 4 H 0.061 0.939 5 C 0.123 3.877 6 N -0.703 5.703 7 C 0.511 3.489 8 O -0.574 6.574 9 C 0.042 3.958 10 O -0.310 6.310 11 C 0.146 3.854 12 C -0.218 4.218 13 C -0.029 4.029 14 C -0.195 4.195 15 C 0.566 3.434 16 N -0.830 5.830 17 O -0.593 6.593 18 C -0.026 4.026 19 C -0.170 4.170 20 N -0.738 5.738 21 C -0.303 4.303 22 H 0.072 0.928 23 C -0.102 4.102 24 N -0.980 5.980 25 Si 1.116 2.884 26 H -0.303 1.303 27 H -0.275 1.275 28 H -0.286 1.286 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.415 0.585 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.417 0.583 42 H 0.413 0.587 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.359 0.641 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 10.752 -9.914 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.062 3.938 4 H 0.079 0.921 5 C -0.002 4.002 6 N -0.356 5.356 7 C 0.297 3.703 8 O -0.453 6.453 9 C -0.036 4.036 10 O -0.222 6.222 11 C 0.100 3.900 12 C -0.236 4.236 13 C -0.048 4.048 14 C -0.199 4.199 15 C 0.354 3.646 16 N -0.395 5.395 17 O -0.475 6.475 18 C -0.045 4.045 19 C -0.189 4.189 20 N -0.381 5.381 21 C -0.435 4.435 22 H 0.090 0.910 23 C -0.294 4.294 24 N -0.629 5.629 25 Si 0.944 3.056 26 H -0.230 1.230 27 H -0.201 1.201 28 H -0.213 1.213 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.179 0.821 40 H 0.187 0.813 41 H 0.249 0.751 42 H 0.245 0.755 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.191 0.809 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.377 10.610 -9.338 16.962 hybrid contribution 0.625 -0.542 -0.275 0.872 sum 10.001 10.067 -9.614 17.141 Atomic orbital electron populations 1.21685 0.95884 1.00531 1.01838 1.22001 0.96730 0.97448 1.01001 1.20638 0.90661 0.93130 0.89328 0.92064 1.21600 0.94313 0.82545 1.01709 1.45765 1.06515 1.10954 1.72384 1.20506 0.82522 0.90895 0.76399 1.90713 1.56773 1.47566 1.50297 1.22667 0.79665 0.94818 1.06454 1.86092 1.20843 1.28520 1.86788 1.19581 0.92659 0.84382 0.93415 1.21551 1.01905 0.91671 1.08522 1.21413 0.92323 0.98604 0.92443 1.19871 0.94724 0.93324 1.11968 1.18295 0.86146 0.85345 0.74861 1.43582 1.12353 1.08853 1.74690 1.90797 1.15882 1.87812 1.53028 1.21112 1.00702 0.90249 0.92463 1.20520 0.91568 0.99240 1.07527 1.42589 1.15869 1.67254 1.12382 1.20212 0.93226 1.29713 1.00305 0.91020 1.26772 1.07910 1.02111 0.92594 1.70999 1.08715 1.49934 1.33293 0.82735 0.71732 0.75894 0.75274 1.22960 1.20134 1.21303 0.93347 0.93112 0.92967 0.90617 0.93816 0.93096 0.90013 0.74787 0.85256 0.86493 0.82092 0.81333 0.75077 0.75503 0.84221 0.84290 0.80908 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.18 71.98 0.66 -3.95 16 2 C -0.13 -4.05 5.61 30.59 0.17 -3.88 16 3 C 0.17 5.61 2.59 44.99 0.12 5.73 16 4 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 5 C 0.12 3.68 5.23 86.38 0.45 4.13 16 6 N -0.70 -19.69 5.39 -463.06 -2.49 -22.19 16 7 C 0.51 14.88 7.91 87.66 0.69 15.57 16 8 O -0.57 -21.77 16.50 15.99 0.26 -21.51 16 9 C 0.04 0.87 5.21 71.24 0.37 1.24 16 10 O -0.31 -7.95 9.66 -71.30 -0.69 -8.64 16 11 C 0.15 3.10 6.70 22.63 0.15 3.25 16 12 C -0.22 -3.32 9.01 22.33 0.20 -3.12 16 13 C -0.03 -0.37 9.53 22.50 0.21 -0.16 16 14 C -0.20 -3.46 5.87 -20.08 -0.12 -3.58 16 15 C 0.57 10.61 8.04 86.72 0.70 11.30 16 16 N -0.83 -7.51 8.82 -175.77 -1.55 -9.06 16 17 O -0.59 -16.41 17.18 -3.97 -0.07 -16.48 16 18 C -0.03 -0.53 9.58 22.51 0.22 -0.32 16 19 C -0.17 -3.60 9.97 22.33 0.22 -3.38 16 20 N -0.74 -30.87 4.50 -322.94 -1.45 -32.32 16 21 C -0.30 -14.40 7.75 84.03 0.65 -13.75 16 22 H 0.07 3.33 7.32 -2.91 -0.02 3.30 16 23 C -0.10 -5.30 5.50 84.86 0.47 -4.84 16 24 N -0.98 -56.16 13.70 21.65 0.30 -55.86 16 25 Si 1.12 47.54 29.92 68.60 2.05 49.60 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 28 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 29 H 0.05 1.93 5.99 -2.38 -0.01 1.92 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 36 H 0.42 11.12 8.14 -92.71 -0.75 10.37 16 37 H 0.13 1.79 7.64 -2.39 -0.02 1.77 16 38 H 0.12 2.02 7.66 -2.39 -0.02 2.00 16 39 H 0.16 1.66 6.28 -2.91 -0.02 1.65 16 40 H 0.17 0.69 6.39 -2.91 -0.02 0.67 16 41 H 0.42 1.06 6.85 -92.71 -0.64 0.43 16 42 H 0.41 2.81 8.93 -92.71 -0.83 1.98 16 43 H 0.14 2.82 7.64 -2.91 -0.02 2.80 16 44 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 45 H 0.36 16.40 6.63 -92.71 -0.61 15.78 16 46 H 0.24 13.93 6.77 -92.71 -0.63 13.30 16 Total: -1.00 -75.01 385.92 -0.11 -75.12 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -1.63 Total: 37.08 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.17 Total: 4.27 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -5.20 Total: -119.44 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.49 Total: -46.62 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.05 Total: 49.60 kcal Total: -75.01 -0.11 -75.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698621369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.997 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds