Wall clock time and date at job start Tue Mar 31 2020 19:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47579 * 2 1 4 4 H 1.09007 * 109.46695 * 305.00268 * 3 2 1 5 5 C 1.52997 * 109.47409 * 184.99867 * 3 2 1 6 6 N 1.46502 * 109.47292 * 184.99714 * 5 3 2 7 7 C 1.34769 * 119.99975 * 180.02562 * 6 5 3 8 8 O 1.21556 * 120.00553 * 0.02562 * 7 6 5 9 9 C 1.47863 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.39601 * 120.11684 * 0.02562 * 9 7 6 11 11 C 1.37970 * 119.96448 * 179.97438 * 10 9 7 12 12 C 1.38285 * 120.20419 * 359.74126 * 11 10 9 13 13 C 1.38809 * 120.24295 * 0.51421 * 12 11 10 14 14 O 1.35910 * 119.98984 * 179.76491 * 13 12 11 15 15 C 1.42899 * 116.99557 * 359.72176 * 14 13 12 16 16 C 1.50702 * 109.46876 * 179.97438 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72354 * 16 15 14 18 18 O 1.21283 * 120.00262 * 0.02562 * 16 15 14 19 19 C 1.38500 * 120.02631 * 359.48744 * 13 12 11 20 20 N 1.46502 * 109.47196 * 64.99597 * 3 2 1 21 21 C 1.36931 * 120.00530 * 275.00617 * 20 3 2 22 22 H 1.08003 * 119.99574 * 359.97438 * 21 20 3 23 23 C 1.38811 * 120.00375 * 179.97438 * 21 20 3 24 24 N 1.31617 * 119.99994 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99932 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47247 * 89.99787 * 25 23 21 27 27 H 1.48496 * 109.47161 * 209.99660 * 25 23 21 28 28 H 1.48496 * 109.47107 * 329.99473 * 25 23 21 29 29 H 1.09003 * 109.46613 * 299.99911 * 1 2 3 30 30 H 1.08991 * 109.46708 * 59.99863 * 1 2 3 31 31 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46959 * 239.99391 * 2 1 3 33 33 H 1.09005 * 109.47260 * 120.00101 * 2 1 3 34 34 H 1.09001 * 109.46761 * 64.99818 * 5 3 2 35 35 H 1.09000 * 109.47453 * 305.00027 * 5 3 2 36 36 H 0.97006 * 119.99638 * 0.02562 * 6 5 3 37 37 H 1.07992 * 120.01741 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.89345 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.88143 * 180.26009 * 12 11 10 40 40 H 1.09004 * 109.47206 * 60.00261 * 15 14 13 41 41 H 1.08994 * 109.47548 * 299.99917 * 15 14 13 42 42 H 0.96999 * 120.00047 * 180.27521 * 17 16 15 43 43 H 0.97000 * 120.00317 * 0.28382 * 17 16 15 44 44 H 1.08002 * 120.10096 * 180.22932 * 19 13 12 45 45 H 0.97004 * 119.99480 * 94.99804 * 20 3 2 46 46 H 0.97003 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3857 3.0628 -0.0869 8 8 6.1652 2.1462 -0.2596 9 6 5.8887 4.4480 0.0345 10 6 4.9958 5.5025 0.2335 11 6 5.4686 6.7937 0.3468 12 6 6.8258 7.0469 0.2694 13 6 7.7208 6.0055 0.0664 14 8 9.0533 6.2608 -0.0137 15 6 9.4613 7.6244 0.1136 16 6 10.9615 7.7125 0.0005 17 7 11.5746 8.9097 0.0856 18 8 11.6167 6.7066 -0.1725 19 6 7.2570 4.7056 -0.0487 20 7 1.6525 2.0975 1.2518 21 6 0.4158 2.6735 1.3688 22 1 -0.2738 2.6452 0.5381 23 6 0.0484 3.2937 2.5551 24 7 -1.1402 3.8478 2.6673 25 14 1.2414 3.3432 3.9916 26 1 2.0764 4.5677 3.8996 27 1 0.4804 3.3577 5.2667 28 1 2.1156 2.1435 3.9505 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8499 1.0375 -1.0960 35 1 3.9955 0.8310 0.6659 36 1 3.4411 3.5482 0.1315 37 1 3.9356 5.3077 0.2986 38 1 4.7768 7.6086 0.5012 39 1 7.1905 8.0591 0.3630 40 1 9.1473 8.0085 1.0842 41 1 9.0016 8.2166 -0.6775 42 1 12.5398 8.9669 0.0088 43 1 11.0506 9.7142 0.2238 44 1 7.9526 3.8939 -0.2029 45 1 2.2720 2.1231 1.9978 46 1 -1.3968 4.2815 3.4962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732201006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:35 Heat of formation + Delta-G solvation = -73.534662 kcal Electronic energy + Delta-G solvation = -28097.349101 eV Core-core repulsion = 23987.706665 eV Total energy + Delta-G solvation = -4109.642436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80543 -39.92678 -39.09184 -37.29932 -36.74266 -34.27179 -33.90897 -32.40260 -31.43775 -30.74650 -30.25845 -28.54860 -28.03297 -24.51845 -23.19351 -22.62826 -22.28839 -21.36194 -20.35361 -20.03816 -18.85947 -18.15661 -17.68054 -17.06073 -16.79353 -16.50731 -16.22072 -15.82070 -15.53414 -15.30259 -14.79734 -14.53064 -14.22650 -14.11865 -14.01215 -13.72105 -13.19978 -13.14113 -12.98788 -12.87743 -12.68931 -12.43150 -12.07805 -11.56995 -11.43094 -11.31057 -11.17938 -11.00540 -10.76665 -10.45373 -10.40946 -10.31008 -10.28713 -10.05682 -9.79912 -9.52419 -9.23853 -9.01318 -8.78337 -8.49441 -7.38222 -5.85114 -3.21215 0.68925 1.21807 2.04016 2.21675 2.88255 3.22593 3.30802 3.36800 3.41048 3.52594 3.78075 4.18294 4.40123 4.49867 4.51511 4.58096 4.61629 4.87918 5.01734 5.15609 5.18627 5.27481 5.34240 5.42877 5.73930 5.75671 5.87425 5.89674 5.96854 6.04257 6.16453 6.18473 6.20968 6.26430 6.36127 6.45535 6.50951 6.57477 6.66798 6.75444 6.92829 7.04901 7.27432 7.67399 7.75247 7.90825 8.32990 8.38004 9.11163 9.83638 10.03207 11.32395 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.002460 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.378974 B =11377.951249 C =12549.061179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.111 3.889 6 N -0.709 5.709 7 C 0.553 3.447 8 O -0.543 6.543 9 C -0.090 4.090 10 C -0.117 4.117 11 C -0.084 4.084 12 C -0.189 4.189 13 C 0.115 3.885 14 O -0.289 6.289 15 C 0.039 3.961 16 C 0.519 3.481 17 N -0.852 5.852 18 O -0.515 6.515 19 C -0.088 4.088 20 N -0.747 5.747 21 C -0.242 4.242 22 H 0.095 0.905 23 C 0.008 3.992 24 N -0.930 5.930 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.409 0.591 43 H 0.403 0.597 44 H 0.145 0.855 45 H 0.362 0.638 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.465 12.115 -6.220 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.361 5.361 7 C 0.340 3.660 8 O -0.422 6.422 9 C -0.093 4.093 10 C -0.136 4.136 11 C -0.103 4.103 12 C -0.208 4.208 13 C 0.070 3.930 14 O -0.201 6.201 15 C -0.040 4.040 16 C 0.302 3.698 17 N -0.418 5.418 18 O -0.389 6.389 19 C -0.108 4.108 20 N -0.391 5.391 21 C -0.371 4.371 22 H 0.113 0.887 23 C -0.188 4.188 24 N -0.578 5.578 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.241 0.759 43 H 0.232 0.768 44 H 0.163 0.837 45 H 0.195 0.805 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.157 10.613 -6.527 22.853 hybrid contribution 0.402 1.187 1.404 1.882 sum 19.559 11.800 -5.123 23.411 Atomic orbital electron populations 1.21778 0.95192 0.99733 1.03755 1.22036 0.97350 0.97798 1.00177 1.20560 0.89771 0.93073 0.90803 0.91833 1.21778 0.95576 0.82251 1.01722 1.45938 1.06854 1.11085 1.72211 1.18158 0.82663 0.88015 0.77201 1.90760 1.56098 1.45670 1.49676 1.19781 0.93208 0.93607 1.02713 1.21430 1.00171 0.92291 0.99682 1.20918 0.94629 0.96965 0.97739 1.21376 0.94255 0.98375 1.06788 1.18790 0.81973 0.93954 0.98290 1.86170 1.20590 1.25416 1.87954 1.22437 0.93205 0.84476 1.03904 1.20076 0.89474 0.83796 0.76431 1.43652 1.12100 1.08688 1.77397 1.90836 1.66595 1.35106 1.46349 1.20441 0.94770 0.94701 1.00864 1.42858 1.16960 1.67647 1.11622 1.19052 0.90847 1.27357 0.99857 0.88717 1.24650 0.96358 1.00386 0.97452 1.69690 1.19289 1.42044 1.26761 0.86665 0.81015 0.77870 0.83662 1.21073 1.21847 1.20328 0.89377 0.93861 0.94848 0.93496 0.92632 0.91152 0.91619 0.75229 0.84581 0.84751 0.85207 0.88700 0.88678 0.75938 0.76843 0.83676 0.80497 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 3 C 0.17 2.90 2.59 -67.93 -0.18 2.72 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 6 N -0.71 -11.19 5.34 -61.25 -0.33 -11.51 16 7 C 0.55 9.17 7.77 -12.32 -0.10 9.07 16 8 O -0.54 -10.53 16.35 5.32 0.09 -10.44 16 9 C -0.09 -1.29 5.87 -104.99 -0.62 -1.91 16 10 C -0.12 -1.45 9.54 -39.17 -0.37 -1.83 16 11 C -0.08 -0.86 10.03 -39.66 -0.40 -1.26 16 12 C -0.19 -1.77 9.03 -39.35 -0.36 -2.13 16 13 C 0.11 1.36 6.68 -39.27 -0.26 1.10 16 14 O -0.29 -3.41 9.67 -39.37 -0.38 -3.79 16 15 C 0.04 0.26 5.22 36.01 0.19 0.45 16 16 C 0.52 4.25 8.18 -10.98 -0.09 4.16 16 17 N -0.85 -2.77 8.87 31.22 0.28 -2.49 16 18 O -0.52 -7.15 17.34 -14.35 -0.25 -7.40 16 19 C -0.09 -1.24 9.53 -39.02 -0.37 -1.61 16 20 N -0.75 -15.65 4.31 -53.43 -0.23 -15.88 16 21 C -0.24 -6.05 8.23 -15.06 -0.12 -6.17 16 22 H 0.10 2.56 7.55 -52.48 -0.40 2.16 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -27.40 13.97 55.49 0.78 -26.62 16 25 Si 0.88 20.94 27.74 -169.99 -4.71 16.22 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 29 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 6.29 6.17 -40.82 -0.25 6.04 16 37 H 0.14 1.64 6.40 -52.49 -0.34 1.31 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 0.74 6.28 -52.49 -0.33 0.41 16 40 H 0.10 0.40 7.65 -51.93 -0.40 0.00 16 41 H 0.10 0.38 7.67 -51.93 -0.40 -0.02 16 42 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 43 H 0.40 -0.11 8.83 -40.82 -0.36 -0.48 16 44 H 0.15 2.17 7.65 -52.49 -0.40 1.77 16 45 H 0.36 7.78 5.66 -40.82 -0.23 7.55 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -35.65 384.58 -7.89 -43.54 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.32 Total: 12.71 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.60 Total: -0.13 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.49 Total: -56.51 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.54 Total: -21.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.65 -7.89 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732201006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.997 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds