Wall clock time and date at job start Tue Mar 31 2020 19:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47579 * 2 1 4 4 H 1.09007 * 109.46695 * 305.00268 * 3 2 1 5 5 C 1.52997 * 109.47409 * 184.99867 * 3 2 1 6 6 N 1.46502 * 109.47292 * 184.99714 * 5 3 2 7 7 C 1.34769 * 119.99975 * 180.02562 * 6 5 3 8 8 O 1.21556 * 120.00553 * 0.02562 * 7 6 5 9 9 C 1.47863 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.39601 * 120.11684 * 0.02562 * 9 7 6 11 11 C 1.37970 * 119.96448 * 179.97438 * 10 9 7 12 12 C 1.38285 * 120.20419 * 359.74126 * 11 10 9 13 13 C 1.38809 * 120.24295 * 0.51421 * 12 11 10 14 14 O 1.35910 * 119.98984 * 179.76491 * 13 12 11 15 15 C 1.42899 * 116.99557 * 359.72176 * 14 13 12 16 16 C 1.50702 * 109.46876 * 179.97438 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72354 * 16 15 14 18 18 O 1.21283 * 120.00262 * 0.02562 * 16 15 14 19 19 C 1.38500 * 120.02631 * 359.48744 * 13 12 11 20 20 N 1.46502 * 109.47196 * 64.99597 * 3 2 1 21 21 C 1.36931 * 120.00530 * 275.00617 * 20 3 2 22 22 H 1.08003 * 119.99574 * 359.97438 * 21 20 3 23 23 C 1.38811 * 120.00375 * 179.97438 * 21 20 3 24 24 N 1.31617 * 119.99994 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99932 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47247 * 89.99787 * 25 23 21 27 27 H 1.48496 * 109.47161 * 209.99660 * 25 23 21 28 28 H 1.48496 * 109.47107 * 329.99473 * 25 23 21 29 29 H 1.09003 * 109.46613 * 299.99911 * 1 2 3 30 30 H 1.08991 * 109.46708 * 59.99863 * 1 2 3 31 31 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46959 * 239.99391 * 2 1 3 33 33 H 1.09005 * 109.47260 * 120.00101 * 2 1 3 34 34 H 1.09001 * 109.46761 * 64.99818 * 5 3 2 35 35 H 1.09000 * 109.47453 * 305.00027 * 5 3 2 36 36 H 0.97006 * 119.99638 * 0.02562 * 6 5 3 37 37 H 1.07992 * 120.01741 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.89345 * 180.02562 * 11 10 9 39 39 H 1.08000 * 119.88143 * 180.26009 * 12 11 10 40 40 H 1.09004 * 109.47206 * 60.00261 * 15 14 13 41 41 H 1.08994 * 109.47548 * 299.99917 * 15 14 13 42 42 H 0.96999 * 120.00047 * 180.27521 * 17 16 15 43 43 H 0.97000 * 120.00317 * 0.28382 * 17 16 15 44 44 H 1.08002 * 120.10096 * 180.22932 * 19 13 12 45 45 H 0.97004 * 119.99480 * 94.99804 * 20 3 2 46 46 H 0.97003 * 119.99979 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3857 3.0628 -0.0869 8 8 6.1652 2.1462 -0.2596 9 6 5.8887 4.4480 0.0345 10 6 4.9958 5.5025 0.2335 11 6 5.4686 6.7937 0.3468 12 6 6.8258 7.0469 0.2694 13 6 7.7208 6.0055 0.0664 14 8 9.0533 6.2608 -0.0137 15 6 9.4613 7.6244 0.1136 16 6 10.9615 7.7125 0.0005 17 7 11.5746 8.9097 0.0856 18 8 11.6167 6.7066 -0.1725 19 6 7.2570 4.7056 -0.0487 20 7 1.6525 2.0975 1.2518 21 6 0.4158 2.6735 1.3688 22 1 -0.2738 2.6452 0.5381 23 6 0.0484 3.2937 2.5551 24 7 -1.1402 3.8478 2.6673 25 14 1.2414 3.3432 3.9916 26 1 2.0764 4.5677 3.8996 27 1 0.4804 3.3577 5.2667 28 1 2.1156 2.1435 3.9505 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8499 1.0375 -1.0960 35 1 3.9955 0.8310 0.6659 36 1 3.4411 3.5482 0.1315 37 1 3.9356 5.3077 0.2986 38 1 4.7768 7.6086 0.5012 39 1 7.1905 8.0591 0.3630 40 1 9.1473 8.0085 1.0842 41 1 9.0016 8.2166 -0.6775 42 1 12.5398 8.9669 0.0088 43 1 11.0506 9.7142 0.2238 44 1 7.9526 3.8939 -0.2029 45 1 2.2720 2.1231 1.9978 46 1 -1.3968 4.2815 3.4962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732201006.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:34 Heat of formation + Delta-G solvation = -101.660323 kcal Electronic energy + Delta-G solvation = -28098.568721 eV Core-core repulsion = 23987.706665 eV Total energy + Delta-G solvation = -4110.862056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65856 -40.90588 -39.99416 -38.51361 -37.94486 -35.37907 -34.80714 -34.18379 -32.35465 -32.06918 -31.58848 -29.49372 -29.11705 -25.83658 -24.74435 -23.69197 -23.42397 -22.11620 -21.74446 -21.15924 -20.00204 -19.32610 -18.65805 -17.93928 -17.48300 -17.40041 -17.12714 -17.03069 -16.83068 -16.24677 -16.17303 -15.83978 -15.40061 -15.24634 -14.91476 -14.74012 -14.64815 -14.59009 -14.43482 -14.15519 -13.88429 -13.48219 -13.10250 -12.90509 -12.86810 -12.81722 -12.38531 -12.19750 -12.12873 -12.08382 -11.87684 -11.62019 -11.41169 -11.14876 -11.12121 -10.89523 -10.76247 -10.27066 -9.98462 -9.35759 -9.28021 -7.93163 -5.25270 -0.26737 0.33073 1.41178 1.44657 1.47009 1.49371 1.60076 1.77256 2.16973 2.53506 2.78195 2.83383 3.37678 3.56630 3.66571 3.68351 3.86021 3.90025 4.00772 4.10629 4.12407 4.13365 4.28569 4.31620 4.44147 4.46973 4.55459 4.73234 4.82434 4.85324 5.07356 5.10303 5.14157 5.20159 5.24563 5.33635 5.40588 5.51597 5.55684 5.73651 5.81156 5.89465 6.22088 6.29260 6.42255 6.48492 7.10727 7.14937 7.25307 7.89331 8.08250 9.27715 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015911 B = 0.002460 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.378974 B =11377.951249 C =12549.061179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.064 0.936 5 C 0.118 3.882 6 N -0.706 5.706 7 C 0.552 3.448 8 O -0.580 6.580 9 C -0.109 4.109 10 C -0.125 4.125 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.115 3.885 14 O -0.320 6.320 15 C 0.029 3.971 16 C 0.515 3.485 17 N -0.824 5.824 18 O -0.587 6.587 19 C -0.114 4.114 20 N -0.746 5.746 21 C -0.203 4.203 22 H 0.071 0.929 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.936 3.064 26 H -0.274 1.274 27 H -0.307 1.307 28 H -0.266 1.266 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.413 0.587 37 H 0.136 0.864 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.414 0.586 43 H 0.424 0.576 44 H 0.120 0.880 45 H 0.362 0.638 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.652 14.422 -6.414 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.082 0.918 5 C -0.006 4.006 6 N -0.357 5.357 7 C 0.340 3.660 8 O -0.462 6.462 9 C -0.112 4.112 10 C -0.144 4.144 11 C -0.097 4.097 12 C -0.186 4.186 13 C 0.070 3.930 14 O -0.234 6.234 15 C -0.048 4.048 16 C 0.299 3.701 17 N -0.391 5.391 18 O -0.466 6.466 19 C -0.134 4.134 20 N -0.390 5.390 21 C -0.334 4.334 22 H 0.089 0.911 23 C -0.248 4.248 24 N -0.632 5.632 25 Si 0.766 3.234 26 H -0.200 1.200 27 H -0.234 1.234 28 H -0.191 1.191 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.251 0.749 37 H 0.154 0.846 38 H 0.184 0.816 39 H 0.196 0.804 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.246 0.754 43 H 0.256 0.744 44 H 0.138 0.862 45 H 0.195 0.805 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.374 12.972 -6.744 25.077 hybrid contribution 0.091 0.541 1.348 1.456 sum 20.465 13.513 -5.396 25.110 Atomic orbital electron populations 1.21687 0.96178 1.00459 1.01701 1.21969 0.96269 0.96984 1.01682 1.20697 0.90808 0.93468 0.88961 0.91804 1.21695 0.94084 0.82483 1.02363 1.45916 1.06795 1.11084 1.71933 1.18557 0.82412 0.88828 0.76226 1.90728 1.56880 1.47028 1.51551 1.19596 0.93667 0.92791 1.05126 1.21539 0.99830 0.93001 1.00052 1.21327 0.95655 0.96609 0.96074 1.21832 0.93332 0.99726 1.03758 1.18799 0.82658 0.93636 0.97927 1.86139 1.20486 1.28745 1.87982 1.22873 0.92190 0.82658 1.07095 1.20495 0.90194 0.83936 0.75466 1.43471 1.12613 1.08130 1.74903 1.90814 1.68032 1.37644 1.50115 1.20365 0.94441 0.95645 1.02936 1.42846 1.15479 1.67666 1.13013 1.18954 0.91321 1.24756 0.98390 0.91124 1.25239 0.97813 1.01631 1.00118 1.69844 1.21550 1.44614 1.27211 0.85701 0.79109 0.78565 0.80073 1.19999 1.23429 1.19127 0.93451 0.93735 0.92829 0.90276 0.92806 0.89668 0.92140 0.74923 0.84625 0.81553 0.80434 0.85269 0.85019 0.75385 0.74352 0.86236 0.80498 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.18 71.98 0.66 -4.23 16 2 C -0.13 -3.97 5.61 30.59 0.17 -3.79 16 3 C 0.17 5.62 2.59 44.99 0.12 5.74 16 4 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 5 C 0.12 3.61 5.23 86.38 0.45 4.06 16 6 N -0.71 -21.92 5.34 -465.96 -2.49 -24.41 16 7 C 0.55 18.53 7.77 86.79 0.67 19.20 16 8 O -0.58 -23.19 16.35 -3.89 -0.06 -23.25 16 9 C -0.11 -3.13 5.87 -20.10 -0.12 -3.24 16 10 C -0.13 -2.91 9.54 22.54 0.21 -2.69 16 11 C -0.08 -1.31 10.03 22.22 0.22 -1.08 16 12 C -0.17 -2.43 9.03 22.42 0.20 -2.23 16 13 C 0.11 2.54 6.68 22.47 0.15 2.69 16 14 O -0.32 -7.16 9.67 -73.50 -0.71 -7.87 16 15 C 0.03 0.30 5.22 71.24 0.37 0.67 16 16 C 0.51 7.54 8.18 87.66 0.72 8.25 16 17 N -0.82 -3.10 8.87 -173.53 -1.54 -4.64 16 18 O -0.59 -16.56 17.34 16.00 0.28 -16.29 16 19 C -0.11 -3.27 9.53 22.63 0.22 -3.06 16 20 N -0.75 -30.66 4.31 -322.94 -1.39 -32.06 16 21 C -0.20 -10.22 8.23 84.03 0.69 -9.53 16 22 H 0.07 3.88 7.55 -2.91 -0.02 3.86 16 23 C -0.06 -3.08 5.50 84.86 0.47 -2.62 16 24 N -0.98 -59.12 13.97 21.65 0.30 -58.82 16 25 Si 0.94 43.35 27.74 68.60 1.90 45.25 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 28 H -0.27 -11.63 6.52 99.48 0.65 -10.98 16 29 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 12.37 6.17 -92.70 -0.57 11.79 16 37 H 0.14 3.09 6.40 -2.91 -0.02 3.07 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.18 0.80 6.28 -2.91 -0.02 0.78 16 40 H 0.13 0.41 7.65 -2.38 -0.02 0.39 16 41 H 0.13 0.35 7.67 -2.39 -0.02 0.34 16 42 H 0.41 1.31 8.93 -92.71 -0.83 0.49 16 43 H 0.42 -1.95 8.83 -92.71 -0.82 -2.77 16 44 H 0.12 3.92 7.65 -2.91 -0.02 3.89 16 45 H 0.36 15.08 5.66 -92.71 -0.52 14.56 16 46 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -82.98 384.58 -0.24 -83.22 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -1.74 Total: 30.72 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.21 Total: 8.13 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -5.12 Total: -119.92 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.50 Total: -47.41 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.25 kcal Total: -82.98 -0.24 -83.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732201006.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.439 kcal (2) G-P(sol) polarization free energy of solvation -82.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds