Wall clock time and date at job start Tue Mar 31 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46934 * 2 1 4 4 N 1.46503 * 109.46722 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99471 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00141 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99940 * 179.72687 * 5 4 3 8 8 H 1.09004 * 109.46431 * 300.27629 * 7 5 4 9 9 C 1.53002 * 109.46882 * 60.27415 * 7 5 4 10 10 N 1.46495 * 109.47401 * 180.27971 * 7 5 4 11 11 C 1.34779 * 120.00271 * 154.99994 * 10 7 5 12 12 O 1.21591 * 119.99547 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00156 * 179.97438 * 11 10 7 14 14 C 1.40022 * 120.00198 * 174.74828 * 13 11 10 15 15 C 1.38919 * 119.99650 * 326.14344 * 14 13 11 16 16 C 1.38012 * 119.99407 * 179.79160 * 15 14 13 17 17 C 1.38897 * 120.00284 * 0.46159 * 16 15 14 18 18 O 1.35784 * 120.00198 * 179.77004 * 17 16 15 19 19 C 1.34811 * 117.00068 * 185.94672 * 18 17 16 20 20 H 1.08002 * 120.00193 * 5.40986 * 19 18 17 21 21 C 1.38626 * 119.99771 * 185.41220 * 19 18 17 22 22 N 1.31573 * 120.00147 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00224 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47118 * 59.99489 * 23 21 19 25 25 H 1.48497 * 109.47535 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47006 * 300.00118 * 23 21 19 27 27 C 1.38907 * 120.00064 * 359.79447 * 17 16 15 28 28 C 1.38004 * 120.00238 * 359.97110 * 27 17 16 29 29 H 1.09003 * 109.47269 * 300.00300 * 1 2 3 30 30 H 1.09003 * 109.46794 * 60.00047 * 1 2 3 31 31 H 1.08999 * 109.46706 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47363 * 239.99874 * 2 1 3 33 33 H 1.08997 * 109.46669 * 119.99507 * 2 1 3 34 34 H 1.09000 * 109.46670 * 59.99787 * 3 2 1 35 35 H 1.08994 * 109.47152 * 300.00226 * 3 2 1 36 36 H 0.96993 * 119.99946 * 0.02562 * 4 3 2 37 37 H 1.09007 * 109.46636 * 180.02562 * 9 7 5 38 38 H 1.08992 * 109.47060 * 299.99982 * 9 7 5 39 39 H 1.08996 * 109.47010 * 60.00340 * 9 7 5 40 40 H 0.97007 * 120.00051 * 334.99449 * 10 7 5 41 41 H 0.97000 * 119.99626 * 354.74344 * 13 11 10 42 42 H 1.07994 * 120.00189 * 0.02610 * 15 14 13 43 43 H 1.07993 * 119.99698 * 180.23374 * 16 15 14 44 44 H 0.97003 * 120.00171 * 180.02562 * 22 21 19 45 45 H 1.07999 * 119.99882 * 179.97438 * 27 17 16 46 46 H 1.08001 * 120.00092 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5725 3.6600 -0.0002 7 6 5.6859 2.6098 0.0071 8 1 6.0451 2.0943 0.8978 9 6 6.2016 1.8908 -1.2412 10 7 6.1742 3.9910 0.0119 11 6 7.3939 4.2728 0.5113 12 8 8.0888 3.3807 0.9582 13 7 7.8433 5.5435 0.5153 14 6 9.0615 5.8533 1.1323 15 6 9.4618 5.1588 2.2668 16 6 10.6645 5.4613 2.8725 17 6 11.4701 6.4666 2.3533 18 8 12.6511 6.7674 2.9519 19 6 13.3259 7.8322 2.4739 20 1 12.8824 8.4543 1.7106 21 6 14.5890 8.1285 2.9623 22 7 15.1291 7.3709 3.8926 23 14 15.5243 9.6035 2.2996 24 1 14.7423 10.8402 2.5531 25 1 16.8407 9.7013 2.9798 26 1 15.7336 9.4411 0.8384 27 6 11.0673 7.1647 1.2219 28 6 9.8669 6.8590 0.6134 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.9900 0.6025 0.0006 37 1 7.2916 1.8905 -1.2360 38 1 5.8383 0.8632 -1.2447 39 1 5.8423 2.4063 -2.1318 40 1 5.6197 4.7027 -0.3444 41 1 7.3229 6.2432 0.0906 42 1 8.8337 4.3796 2.6727 43 1 10.9775 4.9188 3.7522 44 1 16.0128 7.5785 4.2345 45 1 11.6935 7.9467 0.8185 46 1 9.5536 7.4021 -0.2660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043572496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:25 Heat of formation + Delta-G solvation = -96.230682 kcal Electronic energy + Delta-G solvation = -27457.541387 eV Core-core repulsion = 23346.914777 eV Total energy + Delta-G solvation = -4110.626610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.85053 -40.98135 -40.30698 -38.33756 -36.91580 -36.04162 -35.42123 -34.15914 -33.70696 -31.85597 -31.59525 -29.18168 -27.39545 -27.27790 -25.24541 -23.92132 -23.16826 -22.57751 -21.88912 -21.27768 -20.18820 -19.53450 -18.99742 -18.46891 -17.46595 -17.40532 -16.96558 -16.57201 -16.33940 -16.06066 -16.03156 -15.63251 -15.45716 -15.45266 -15.03710 -14.66535 -14.50892 -14.22585 -13.97194 -13.80303 -13.56617 -13.41326 -13.33519 -13.26304 -13.12692 -12.92207 -12.69262 -12.65487 -12.37914 -12.13214 -12.03203 -11.74452 -11.39697 -11.37665 -11.03924 -10.95446 -10.55868 -10.27325 -10.15246 -9.82066 -8.55444 -8.42685 -6.09915 0.54946 0.59369 1.38332 1.39942 1.43543 1.49419 1.54837 2.03290 2.19372 2.21700 2.86564 3.16591 3.20094 3.54164 3.55771 3.92482 4.00472 4.07218 4.08123 4.12736 4.15769 4.35901 4.52339 4.59284 4.63294 4.67636 4.75418 4.76758 4.78956 4.86741 5.07607 5.17217 5.19388 5.20318 5.25735 5.28806 5.31002 5.33082 5.42966 5.45926 5.60067 5.71017 5.94895 6.05413 6.20318 6.40044 6.95446 7.01539 7.07595 7.47754 7.82729 8.80497 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.042883 B = 0.001654 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.781145 B =16929.419768 C =17138.956650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.117 3.883 4 N -0.710 5.710 5 C 0.516 3.484 6 O -0.571 6.571 7 C 0.143 3.857 8 H 0.112 0.888 9 C -0.154 4.154 10 N -0.718 5.718 11 C 0.704 3.296 12 O -0.611 6.611 13 N -0.663 5.663 14 C 0.084 3.916 15 C -0.072 4.072 16 C -0.186 4.186 17 C 0.105 3.895 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.106 0.894 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.256 1.256 27 C -0.217 4.217 28 C -0.082 4.082 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.418 0.582 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.421 0.579 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.272 0.728 45 H 0.132 0.868 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.239 -12.580 -13.457 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.363 5.363 5 C 0.302 3.698 6 O -0.451 6.451 7 C 0.034 3.966 8 H 0.130 0.870 9 C -0.212 4.212 10 N -0.376 5.376 11 C 0.405 3.595 12 O -0.490 6.490 13 N -0.312 5.312 14 C -0.010 4.010 15 C -0.093 4.093 16 C -0.206 4.206 17 C 0.055 3.945 18 O -0.139 6.139 19 C -0.489 4.489 20 H 0.123 0.877 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.180 1.180 27 C -0.237 4.237 28 C -0.102 4.102 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.250 0.750 41 H 0.259 0.741 42 H 0.148 0.852 43 H 0.131 0.869 44 H 0.081 0.919 45 H 0.150 0.850 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.847 -12.801 -12.759 33.198 hybrid contribution 0.478 0.810 -0.117 0.947 sum -27.369 -11.992 -12.876 32.538 Atomic orbital electron populations 1.21700 0.94368 1.02733 1.02177 1.21700 0.97064 0.93994 1.03838 1.21506 0.78532 0.98885 1.01754 1.45840 1.07897 1.08438 1.74134 1.20633 0.89658 0.84177 0.75367 1.90700 1.70592 1.32628 1.51142 1.20698 0.89797 0.83267 1.02796 0.87002 1.22133 1.02192 1.01470 0.95416 1.44679 1.16213 1.10190 1.66513 1.15922 0.81947 0.82888 0.78762 1.90935 1.57827 1.46398 1.53883 1.42114 1.21369 1.08334 1.59406 1.17116 0.88469 1.00614 0.94803 1.20715 0.95367 0.99271 0.93928 1.20226 0.95963 1.00973 1.03421 1.19859 0.87180 0.94675 0.92800 1.83966 1.28975 1.46353 1.54603 1.21814 0.99755 1.03433 1.23854 0.87711 1.26605 0.96611 1.02487 0.96445 1.70202 1.17077 1.40375 1.28410 0.84636 0.76928 0.75907 0.78670 1.18041 1.19933 1.18046 1.21109 0.99438 1.04840 0.98315 1.20779 0.92053 0.97855 0.99530 0.92742 0.92406 0.91278 0.89953 0.90454 0.92605 0.91929 0.74410 0.92282 0.88091 0.91365 0.74973 0.74146 0.85235 0.86897 0.91950 0.85000 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 71.98 0.71 0.01 16 2 C -0.13 -0.53 6.05 30.60 0.19 -0.35 16 3 C 0.12 1.09 5.67 86.38 0.49 1.58 16 4 N -0.71 -6.75 5.45 -463.05 -2.52 -9.27 16 5 C 0.52 8.37 7.22 87.66 0.63 9.01 16 6 O -0.57 -13.43 15.84 -3.02 -0.05 -13.48 16 7 C 0.14 2.36 2.98 44.25 0.13 2.50 16 8 H 0.11 2.01 7.58 -2.38 -0.02 1.99 16 9 C -0.15 -1.91 9.38 71.98 0.68 -1.24 16 10 N -0.72 -14.48 4.96 -461.40 -2.29 -16.77 16 11 C 0.70 19.35 8.26 179.05 1.48 20.83 16 12 O -0.61 -21.57 13.72 -4.00 -0.05 -21.63 16 13 N -0.66 -17.14 5.35 -317.04 -1.70 -18.83 16 14 C 0.08 2.89 6.27 38.16 0.24 3.13 16 15 C -0.07 -2.90 8.65 22.38 0.19 -2.70 16 16 C -0.19 -8.63 9.98 22.37 0.22 -8.40 16 17 C 0.11 5.39 6.65 22.59 0.15 5.54 16 18 O -0.23 -14.22 9.75 -22.93 -0.22 -14.45 16 19 C -0.41 -24.04 9.44 67.91 0.64 -23.40 16 20 H 0.11 5.49 5.29 -2.91 -0.02 5.47 16 21 C -0.02 -1.38 5.49 84.82 0.47 -0.92 16 22 N -0.92 -57.29 13.67 21.61 0.30 -57.00 16 23 Si 1.02 42.81 29.55 68.60 2.03 44.83 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 27 C -0.22 -9.36 9.13 22.37 0.20 -9.15 16 28 C -0.08 -2.78 9.96 22.37 0.22 -2.56 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.42 1.51 7.90 -92.71 -0.73 0.78 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.10 0.60 7.57 -2.39 -0.02 0.58 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.41 7.20 7.81 -92.70 -0.72 6.48 16 41 H 0.42 7.52 8.83 -92.71 -0.82 6.70 16 42 H 0.13 5.07 6.45 -2.91 -0.02 5.05 16 43 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.13 5.59 5.71 -2.91 -0.02 5.57 16 46 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -82.02 389.51 0.90 -81.11 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -1.23 Total: 31.60 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 6.65 Total: -6.12 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -6.21 Total: -101.87 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.33 Total: -49.56 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -82.02 0.90 -81.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.117 kcal (2) G-P(sol) polarization free energy of solvation -82.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds