Wall clock time and date at job start Tue Mar 31 2020 18:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47030 * 2 1 4 4 N 1.46502 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.36930 * 120.00164 * 266.66579 * 4 3 2 6 6 H 1.08003 * 120.00071 * 338.16686 * 5 4 3 7 7 C 1.38814 * 120.00330 * 158.16246 * 5 4 3 8 8 N 1.31619 * 119.99587 * 5.17772 * 7 5 4 9 9 Si 1.86793 * 120.00403 * 185.18184 * 7 5 4 10 10 H 1.48504 * 109.47478 * 89.99608 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00184 * 9 7 5 12 12 H 1.48502 * 109.47114 * 329.99898 * 9 7 5 13 13 C 1.46497 * 119.99803 * 86.66828 * 4 3 2 14 14 C 1.50702 * 109.47080 * 269.99745 * 13 4 3 15 15 O 1.21230 * 119.99932 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99774 * 180.02562 * 14 13 4 17 17 C 1.34777 * 119.99610 * 180.02562 * 16 14 13 18 18 O 1.21550 * 120.00017 * 359.97438 * 17 16 14 19 19 N 1.34781 * 120.00186 * 180.02562 * 17 16 14 20 20 C 1.40124 * 120.00218 * 185.17827 * 19 17 16 21 21 C 1.38843 * 120.01727 * 213.76335 * 20 19 17 22 22 C 1.38086 * 119.98801 * 180.23416 * 21 20 19 23 23 C 1.38721 * 120.01638 * 359.51438 * 22 21 20 24 24 O 1.35977 * 119.98676 * 180.25829 * 23 22 21 25 25 C 1.42898 * 116.99511 * 180.02562 * 24 23 22 26 26 C 1.38719 * 120.02429 * 0.23012 * 23 22 21 27 27 C 1.38090 * 120.01410 * 0.02562 * 26 23 22 28 28 H 1.09001 * 109.47072 * 300.00202 * 1 2 3 29 29 H 1.09003 * 109.47264 * 59.99768 * 1 2 3 30 30 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46692 * 240.00437 * 2 1 3 32 32 H 1.08996 * 109.46914 * 120.00406 * 2 1 3 33 33 H 1.09001 * 109.47358 * 59.99973 * 3 2 1 34 34 H 1.09003 * 109.47287 * 300.00218 * 3 2 1 35 35 H 0.96999 * 119.99894 * 180.02562 * 8 7 5 36 36 H 1.09008 * 109.47330 * 150.00243 * 13 4 3 37 37 H 1.08996 * 109.47746 * 30.00058 * 13 4 3 38 38 H 0.97000 * 120.00644 * 359.97438 * 16 14 13 39 39 H 0.97002 * 119.99362 * 5.18034 * 19 17 16 40 40 H 1.08006 * 120.00286 * 359.97438 * 21 20 19 41 41 H 1.08007 * 119.99585 * 179.78980 * 22 21 20 42 42 H 1.09008 * 109.46872 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.47611 * 299.99341 * 25 24 23 44 44 H 1.09004 * 109.47462 * 59.99970 * 25 24 23 45 45 H 1.08002 * 119.98913 * 180.02562 * 26 23 22 46 46 H 1.08010 * 120.00298 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5113 1.1829 6 1 3.7087 1.9109 2.0632 7 6 5.5037 1.0674 1.2514 8 7 6.1237 0.6757 0.1585 9 14 6.3911 1.0258 2.8945 10 1 6.1733 -0.2929 3.5417 11 1 7.8449 1.2366 2.6775 12 1 5.8606 2.1009 3.7710 13 6 4.2369 1.3689 -1.2675 14 6 4.4880 -0.0747 -1.6195 15 8 4.0941 -0.9551 -0.8850 16 7 5.1505 -0.3870 -2.7509 17 6 5.3746 -1.6782 -3.0660 18 8 4.9796 -2.5608 -2.3295 19 7 6.0375 -1.9906 -4.1971 20 6 6.1761 -3.3313 -4.5805 21 6 7.3260 -3.7510 -5.2358 22 6 7.4598 -5.0712 -5.6176 23 6 6.4502 -5.9804 -5.3376 24 8 6.5849 -7.2814 -5.7092 25 6 5.5061 -8.1624 -5.3894 26 6 5.3034 -5.5628 -4.6782 27 6 5.1660 -4.2417 -4.3005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 7.0414 0.3652 0.2063 36 1 5.1895 1.8895 -1.1676 37 1 3.6476 1.8378 -2.0555 38 1 5.4654 0.3173 -3.3389 39 1 6.4187 -1.2873 -4.7458 40 1 8.1137 -3.0440 -5.4506 41 1 8.3528 -5.3972 -6.1303 42 1 5.7412 -9.1671 -5.7409 43 1 5.3592 -8.1800 -4.3095 44 1 4.5950 -7.8121 -5.8745 45 1 4.5178 -6.2712 -4.4601 46 1 4.2732 -3.9168 -3.7868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058909946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:24 Heat of formation + Delta-G solvation = -37.016264 kcal Electronic energy + Delta-G solvation = -29267.201767 eV Core-core repulsion = 25159.142887 eV Total energy + Delta-G solvation = -4108.058880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.70856 -39.82857 -38.20090 -36.94701 -35.46040 -34.14371 -33.24720 -32.89391 -31.08479 -30.57308 -29.11511 -27.53021 -26.92248 -25.52689 -23.48806 -22.71354 -22.00047 -20.95304 -20.04278 -19.50600 -18.44832 -18.19929 -17.30209 -16.74058 -16.07738 -15.80382 -15.49541 -15.32011 -14.90060 -14.45609 -14.31836 -14.18430 -13.79872 -13.71925 -13.37805 -13.11553 -12.96512 -12.85097 -12.70832 -12.52919 -12.16435 -12.03623 -11.54864 -11.41946 -11.20787 -10.99501 -10.94877 -10.78490 -10.58552 -10.35783 -10.09571 -10.04938 -9.88099 -9.73118 -9.63308 -9.01152 -8.97644 -8.77266 -8.24487 -7.62746 -6.89085 -5.88524 -3.26493 1.31310 1.42770 2.89576 3.18538 3.22177 3.38655 3.44672 3.47660 3.82394 4.35236 4.42066 4.61837 4.78901 4.84730 4.99060 5.01550 5.24060 5.32300 5.33054 5.38341 5.46131 5.55178 5.81437 5.85113 5.88247 5.99091 6.05179 6.16053 6.26310 6.32149 6.39516 6.43990 6.49128 6.57555 6.59866 6.77884 6.88332 6.94658 7.11607 7.18525 7.35148 7.42235 7.48993 7.70298 8.07047 8.31163 8.97175 9.12455 9.54851 9.76285 10.19795 11.20273 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.002920 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.560908 B = 9585.730221 C =10431.983295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.149 3.851 4 N -0.576 5.576 5 C -0.240 4.240 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.914 5.914 9 Si 0.915 3.085 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.172 3.828 14 C 0.522 3.478 15 O -0.463 6.463 16 N -0.689 5.689 17 C 0.691 3.309 18 O -0.524 6.524 19 N -0.690 5.690 20 C 0.141 3.859 21 C -0.112 4.112 22 C -0.132 4.132 23 C 0.101 3.899 24 O -0.321 6.321 25 C 0.028 3.972 26 C -0.185 4.185 27 C -0.081 4.081 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.121 0.879 37 H 0.033 0.967 38 H 0.396 0.604 39 H 0.404 0.596 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.129 0.871 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -5.949 -15.641 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.295 5.295 5 C -0.369 4.369 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.746 3.254 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.040 3.960 14 C 0.308 3.692 15 O -0.329 6.329 16 N -0.355 5.355 17 C 0.392 3.608 18 O -0.395 6.395 19 N -0.340 5.340 20 C 0.045 3.955 21 C -0.133 4.133 22 C -0.151 4.151 23 C 0.055 3.945 24 O -0.235 6.235 25 C -0.068 4.068 26 C -0.204 4.204 27 C -0.101 4.101 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.051 0.949 38 H 0.229 0.771 39 H 0.239 0.761 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.071 -7.310 -14.412 16.195 hybrid contribution 0.925 0.252 0.417 1.046 sum -0.146 -7.057 -13.995 15.674 Atomic orbital electron populations 1.21780 0.98068 1.00299 1.00436 1.22158 0.92616 1.00197 1.03044 1.20990 0.84105 0.94042 0.98627 1.43865 0.99863 1.83413 1.02327 1.19302 0.94926 1.34003 0.88689 0.90566 1.24910 0.97993 0.98775 0.97454 1.69531 1.12101 1.48639 1.25909 0.86084 0.78376 0.77844 0.83131 1.21489 1.21816 1.20628 1.20730 0.98975 0.89650 0.86611 1.22757 0.74846 0.94641 0.76941 1.90624 1.46947 1.49885 1.45396 1.44881 1.57851 1.05876 1.26933 1.16491 0.79166 0.84483 0.80696 1.91021 1.52746 1.46515 1.49240 1.42934 1.59255 1.06290 1.25548 1.17443 0.94175 0.84069 0.99775 1.20663 0.95735 0.95489 1.01444 1.20114 0.98855 0.91472 1.04706 1.18963 0.94926 0.83713 0.96877 1.86040 1.43655 1.16869 1.76944 1.23023 0.89577 0.93177 1.00973 1.21119 0.98359 0.97105 1.03866 1.21052 0.98812 0.92168 0.98101 0.93556 0.93781 0.93932 0.92168 0.92047 0.93303 0.94737 0.93394 0.86176 0.94929 0.77104 0.76137 0.85032 0.85048 0.88489 0.92625 0.92747 0.85366 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.14 -2.92 5.37 -26.73 -0.14 -3.07 16 3 C 0.15 3.07 5.71 -4.04 -0.02 3.04 16 4 N -0.58 -13.86 2.10 -174.61 -0.37 -14.23 16 5 C -0.24 -6.40 9.70 -15.06 -0.15 -6.55 16 6 H 0.08 2.00 7.80 -52.48 -0.41 1.59 16 7 C 0.00 0.13 5.39 -17.43 -0.09 0.04 16 8 N -0.91 -24.93 8.15 55.49 0.45 -24.48 16 9 Si 0.92 22.24 29.56 -169.99 -5.02 17.21 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.17 3.74 5.47 -5.19 -0.03 3.71 16 14 C 0.52 12.00 5.46 -10.98 -0.06 11.94 16 15 O -0.46 -12.96 12.13 -18.20 -0.22 -13.18 16 16 N -0.69 -12.55 5.24 -15.78 -0.08 -12.63 16 17 C 0.69 13.27 8.24 -86.91 -0.72 12.55 16 18 O -0.52 -12.81 12.44 -18.48 -0.23 -13.04 16 19 N -0.69 -9.70 5.35 -14.20 -0.08 -9.78 16 20 C 0.14 2.04 6.28 -83.62 -0.53 1.51 16 21 C -0.11 -1.34 9.96 -39.41 -0.39 -1.73 16 22 C -0.13 -1.58 9.98 -39.46 -0.39 -1.97 16 23 C 0.10 1.30 6.69 -39.23 -0.26 1.03 16 24 O -0.32 -3.78 10.50 -19.67 -0.21 -3.99 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 C -0.19 -2.50 9.03 -39.46 -0.36 -2.85 16 27 C -0.08 -1.26 8.65 -39.41 -0.34 -1.60 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.39 6.39 -51.93 -0.33 1.05 16 32 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 34 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.12 2.77 6.30 -51.92 -0.33 2.44 16 37 H 0.03 0.59 7.92 -51.93 -0.41 0.18 16 38 H 0.40 5.24 8.72 -40.82 -0.36 4.89 16 39 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 41 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 42 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 44 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 45 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 46 H 0.14 2.48 6.42 -52.48 -0.34 2.15 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -36.08 377.51 -8.77 -44.85 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.58 Total: 8.36 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: -2.12 Total: 15.23 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.07 Total: -61.12 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.66 Total: -30.22 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.08 -8.77 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058909946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.829 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds