Wall clock time and date at job start Tue Mar 31 2020 18:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00058 * 2 1 4 4 C 1.52998 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47168 * 300.00353 * 3 2 1 6 6 N 1.46496 * 109.46757 * 299.99789 * 5 3 2 7 7 C 1.34777 * 119.99773 * 180.02562 * 6 5 3 8 8 O 1.21589 * 120.00230 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99920 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99682 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46924 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99960 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.37095 * 120.00087 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99875 * 0.02562 * 14 13 11 16 16 C 1.38945 * 120.00061 * 180.02562 * 14 13 11 17 17 N 1.31405 * 120.00159 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00209 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47571 * 119.99621 * 18 16 14 21 21 H 1.48501 * 109.47252 * 240.00220 * 18 16 14 22 22 C 1.50706 * 109.47264 * 59.99985 * 3 2 1 23 23 C 1.38233 * 120.00109 * 209.72467 * 22 3 2 24 24 C 1.38238 * 119.99749 * 179.78525 * 23 22 3 25 25 C 1.38234 * 120.00078 * 0.44989 * 24 23 22 26 26 C 1.38238 * 120.00032 * 359.80374 * 25 24 23 27 27 C 1.38235 * 120.00123 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47135 * 300.00289 * 1 2 3 30 30 H 1.08999 * 109.47235 * 59.99421 * 1 2 3 31 31 H 1.08997 * 109.46785 * 299.99904 * 4 3 2 32 32 H 1.09002 * 109.47171 * 59.99883 * 4 3 2 33 33 H 1.09004 * 109.47223 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47197 * 59.99961 * 5 3 2 35 35 H 1.09001 * 109.47101 * 180.02562 * 5 3 2 36 36 H 0.96997 * 120.00357 * 359.97438 * 6 5 3 37 37 H 0.96988 * 119.99842 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47468 * 299.99694 * 10 9 7 39 39 H 1.09004 * 109.47307 * 60.00038 * 10 9 7 40 40 H 0.97000 * 119.99712 * 0.02562 * 13 11 10 41 41 H 0.97001 * 120.00531 * 179.97438 * 17 16 14 42 42 H 1.08004 * 119.99934 * 0.02562 * 23 22 3 43 43 H 1.07999 * 119.99925 * 180.27297 * 24 23 22 44 44 H 1.08002 * 120.00276 * 179.83134 * 25 24 23 45 45 H 1.08000 * 120.00524 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00181 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5587 2.0648 -1.2492 6 7 1.9910 1.3378 -2.4454 7 6 1.7032 1.8228 -3.6694 8 8 1.0844 2.8635 -3.7810 9 7 2.1004 1.1537 -4.7700 10 6 1.7871 1.6806 -6.1005 11 6 2.3392 0.7521 -7.1513 12 8 2.9353 -0.2513 -6.8212 13 7 2.1696 1.0362 -8.4579 14 6 2.6714 0.1913 -9.4138 15 1 3.2022 -0.7022 -9.1199 16 6 2.4971 0.4844 -10.7607 17 7 1.8509 1.5712 -11.1184 18 14 3.1802 -0.6672 -12.0633 19 1 3.8602 -1.8115 -11.4048 20 1 2.0693 -1.1716 -12.9099 21 1 4.1547 0.0661 -12.9105 22 6 1.5656 2.0534 1.2305 23 6 1.4490 3.4304 1.1979 24 6 1.0368 4.1159 2.3254 25 6 0.7502 3.4253 3.4880 26 6 0.8719 2.0488 3.5221 27 6 1.2796 1.3627 2.3934 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.8574 0.6436 0.8891 32 1 3.8567 0.6439 -0.8909 33 1 3.9788 2.1804 -0.0002 34 1 0.4721 2.1509 -1.2492 35 1 2.0024 3.0604 -1.2495 36 1 2.4850 0.5078 -2.3564 37 1 2.5937 0.3234 -4.6810 38 1 0.7059 1.7580 -6.2153 39 1 2.2362 2.6671 -6.2156 40 1 1.6926 1.8385 -8.7218 41 1 1.7295 1.7761 -12.0587 42 1 1.6762 3.9702 0.2905 43 1 0.9415 5.1914 2.2986 44 1 0.4309 3.9612 4.3697 45 1 0.6476 1.5091 4.4303 46 1 1.3750 0.2873 2.4201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455350262.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:37 Heat of formation + Delta-G solvation = -82.000368 kcal Electronic energy + Delta-G solvation = -28272.270339 eV Core-core repulsion = 24162.260802 eV Total energy + Delta-G solvation = -4110.009537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82172 -39.62900 -38.30566 -37.92375 -34.89065 -34.36311 -33.62876 -32.81584 -31.36070 -31.24779 -29.95372 -28.13813 -26.71299 -26.20847 -24.41044 -23.43861 -22.68224 -20.69758 -20.34768 -19.56974 -18.53187 -17.98891 -17.71666 -16.67348 -16.18583 -15.91416 -15.67812 -15.42297 -15.20786 -14.91167 -14.78892 -14.55915 -14.27149 -14.19379 -13.89979 -13.79030 -13.60373 -13.38523 -12.96899 -12.77464 -12.65531 -12.38805 -12.16205 -12.08870 -11.84590 -11.69600 -11.62198 -11.34722 -11.13343 -10.94542 -10.40014 -10.31751 -10.07693 -9.95300 -9.63510 -9.25848 -9.15939 -9.12219 -8.60934 -8.58295 -8.08646 -6.50250 -3.92159 0.93677 1.04805 2.76580 3.11139 3.23280 3.30034 3.35274 3.41168 3.46813 3.76740 4.08743 4.17374 4.29129 4.53119 4.61209 4.65623 4.68618 4.80036 4.91981 5.09886 5.13820 5.18510 5.18712 5.20586 5.34326 5.35357 5.42738 5.49144 5.62922 5.63525 5.69226 5.85179 5.92962 6.02217 6.09331 6.09898 6.14309 6.16759 6.47072 6.62225 6.77222 6.85142 7.11358 7.47451 7.94070 8.25375 8.46706 8.80541 9.06138 9.41081 9.88993 10.66757 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032845 B = 0.001857 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.271634 B =15072.318672 C =15449.925042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.367 6.367 3 C 0.146 3.854 4 C -0.135 4.135 5 C 0.119 3.881 6 N -0.742 5.742 7 C 0.705 3.295 8 O -0.600 6.600 9 N -0.724 5.724 10 C 0.129 3.871 11 C 0.429 3.571 12 O -0.597 6.597 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.109 4.109 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.100 4.100 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.407 0.593 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.273 0.727 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 2.685 28.025 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.286 6.286 3 C 0.106 3.894 4 C -0.192 4.192 5 C -0.006 4.006 6 N -0.400 5.400 7 C 0.405 3.595 8 O -0.479 6.479 9 N -0.381 5.381 10 C 0.000 4.000 11 C 0.215 3.785 12 O -0.484 6.484 13 N -0.185 5.185 14 C -0.433 4.433 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.535 5.535 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.110 4.110 23 C -0.128 4.128 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.118 4.118 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.236 0.764 37 H 0.244 0.756 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.083 0.917 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.098 2.877 27.891 28.117 hybrid contribution 0.137 -0.467 -0.790 0.928 sum -1.961 2.410 27.101 27.278 Atomic orbital electron populations 1.22891 0.80871 1.02954 1.00840 1.87977 1.20136 1.25840 1.94664 1.20555 0.95003 0.83236 0.90612 1.21775 0.90713 1.03225 1.03488 1.21748 1.00459 0.95582 0.82828 1.44893 1.62663 1.28559 1.03852 1.15830 0.79924 0.83451 0.80334 1.90901 1.46467 1.24425 1.86109 1.44754 1.61016 1.28334 1.03989 1.20779 1.01000 0.97165 0.81015 1.19773 0.86484 0.88409 0.83862 1.90492 1.47457 1.29439 1.80984 1.41796 1.49003 1.23859 1.03834 1.19777 1.32996 1.05311 0.85255 0.87631 1.25324 0.96968 0.97162 0.98336 1.69620 1.40755 1.24824 1.18307 0.85756 0.78516 0.79839 0.79959 1.19147 1.20635 1.20637 1.20202 1.01116 0.94150 0.95532 1.21195 0.99131 0.93571 0.98945 1.21172 0.99403 1.00100 0.93021 1.21215 0.99778 0.94505 0.98124 1.21162 1.00163 0.94474 0.98283 1.21004 0.98338 1.00409 0.92000 0.89405 0.93449 0.93334 0.91246 0.91021 0.90547 0.91085 0.90441 0.76441 0.75555 0.90054 0.90029 0.77027 0.91661 0.85400 0.85822 0.86091 0.85982 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.04 101.05 1.01 1.19 16 2 O -0.37 -3.55 9.28 -35.23 -0.33 -3.88 16 3 C 0.15 1.31 0.62 -91.77 -0.06 1.25 16 4 C -0.13 -1.08 8.65 37.16 0.32 -0.76 16 5 C 0.12 1.29 3.53 -4.04 -0.01 1.27 16 6 N -0.74 -9.20 5.15 -65.22 -0.34 -9.54 16 7 C 0.71 11.57 8.57 -86.91 -0.74 10.83 16 8 O -0.60 -11.75 16.34 5.29 0.09 -11.67 16 9 N -0.72 -12.34 5.53 -66.41 -0.37 -12.71 16 10 C 0.13 2.42 6.15 -5.20 -0.03 2.39 16 11 C 0.43 9.91 7.85 -10.98 -0.09 9.82 16 12 O -0.60 -15.35 15.24 5.55 0.08 -15.26 16 13 N -0.55 -13.71 5.29 -10.97 -0.06 -13.77 16 14 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 15 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 17 N -0.89 -23.98 13.05 55.50 0.72 -23.26 16 18 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 C -0.11 -0.93 4.02 -104.62 -0.42 -1.35 16 23 C -0.11 -0.92 9.14 -39.58 -0.36 -1.28 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 26 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 27 C -0.10 -0.79 7.77 -39.58 -0.31 -1.10 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.38 6.04 -51.93 -0.31 0.07 16 30 H 0.05 0.47 6.42 -51.93 -0.33 0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.58 6.86 -51.93 -0.36 0.22 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.84 6.54 -51.93 -0.34 0.50 16 35 H 0.08 0.84 6.51 -51.93 -0.34 0.50 16 36 H 0.40 4.36 7.20 -40.82 -0.29 4.06 16 37 H 0.41 6.78 7.45 -40.82 -0.30 6.48 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.13 1.00 6.17 -52.48 -0.32 0.68 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.13 0.97 7.39 -52.49 -0.39 0.58 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -32.38 381.26 -7.80 -40.18 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -6.21 Total: 17.94 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -2.12 Total: 10.64 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.04 Total: -59.27 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.16 Total: -30.81 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.38 -7.80 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455350262.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.824 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds