Wall clock time and date at job start Tue Mar 31 2020 18:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46487 * 109.47285 * 31.17706 * 3 2 1 5 5 C 1.34780 * 120.00109 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99926 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00365 * 180.02562 * 5 4 3 8 8 C 1.50692 * 109.47441 * 180.02562 * 7 5 4 9 9 O 1.21289 * 119.99829 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00290 * 179.97438 * 8 7 5 11 11 C 1.46770 * 121.51054 * 1.84652 * 10 8 7 12 12 C 1.53156 * 107.66484 * 235.12916 * 11 10 8 13 13 C 1.52501 * 109.79996 * 303.85336 * 12 11 10 14 14 H 1.09006 * 108.93907 * 179.66602 * 13 12 11 15 15 O 1.42694 * 110.62552 * 298.70781 * 13 12 11 16 16 C 1.43071 * 113.88048 * 185.34700 * 15 13 12 17 17 C 1.53234 * 109.44587 * 298.35623 * 16 15 13 18 18 N 1.47175 * 108.69421 * 51.58400 * 17 16 15 19 19 C 1.36935 * 121.22505 * 129.02764 * 18 17 16 20 20 H 1.08008 * 119.99988 * 206.17964 * 19 18 17 21 21 C 1.38812 * 120.00068 * 26.17241 * 19 18 17 22 22 N 1.31611 * 120.00185 * 16.92616 * 21 19 18 23 23 Si 1.86800 * 120.00040 * 196.92315 * 21 19 18 24 24 H 1.48504 * 109.47097 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47192 * 119.99780 * 23 21 19 26 26 H 1.48496 * 109.47390 * 240.00230 * 23 21 19 27 27 C 1.47595 * 117.55085 * 309.04752 * 18 17 16 28 28 H 1.09001 * 110.32096 * 172.31428 * 27 18 17 29 29 C 1.46800 * 120.72349 * 180.02562 * 10 8 7 30 30 H 4.40636 * 5.51378 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.46773 * 271.17657 * 3 2 1 32 32 H 1.08997 * 109.46699 * 151.18148 * 3 2 1 33 33 H 0.97000 * 120.00334 * 0.02562 * 4 3 2 34 34 H 1.09003 * 109.47168 * 59.99660 * 7 5 4 35 35 H 1.09011 * 109.46664 * 299.99871 * 7 5 4 36 36 H 1.09004 * 111.36852 * 114.90626 * 11 10 8 37 37 H 1.08998 * 108.67082 * 353.81393 * 11 10 8 38 38 H 1.09004 * 109.41354 * 183.75156 * 12 11 10 39 39 H 1.08998 * 109.41997 * 63.95748 * 12 11 10 40 40 H 1.08994 * 109.47500 * 178.36528 * 16 15 13 41 41 H 1.09001 * 109.47796 * 58.34931 * 16 15 13 42 42 H 1.09003 * 109.59814 * 291.82301 * 17 16 15 43 43 H 1.08991 * 109.73079 * 171.42499 * 17 16 15 44 44 H 0.97003 * 120.00418 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.51940 * 5.78931 * 29 10 8 46 46 H 1.09000 * 109.51897 * 245.60738 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1807 -0.7150 5 6 4.4601 -1.3906 -0.8429 6 8 5.2478 -0.6010 -0.3665 7 6 4.9631 -2.6056 -1.5789 8 6 6.4700 -2.6050 -1.5788 9 8 7.0760 -1.7060 -1.0350 10 7 7.1444 -3.6033 -2.1829 11 6 6.4454 -4.6861 -2.8851 12 6 6.9242 -6.0126 -2.2876 13 6 8.4428 -6.1068 -2.3896 14 1 8.7686 -7.0522 -1.9555 15 8 8.8581 -6.0714 -3.7543 16 6 10.2621 -6.2768 -3.9380 17 6 11.0377 -5.1591 -3.2328 18 7 10.5618 -5.0586 -1.8437 19 6 11.4378 -5.0611 -0.7913 20 1 11.1142 -5.4054 0.1799 21 6 12.7419 -4.6213 -0.9726 22 7 13.0528 -3.9023 -2.0302 23 14 14.0554 -5.0498 0.2845 24 1 13.4533 -5.8615 1.3725 25 1 15.1352 -5.8282 -0.3736 26 1 14.6221 -3.8008 0.8537 27 6 9.1055 -4.9554 -1.6268 28 1 8.8754 -5.0241 -0.5636 29 6 8.6123 -3.6188 -2.1919 30 1 -1.0498 -0.0002 -0.0004 31 1 3.0093 -0.0203 1.0275 32 1 3.0089 0.9012 -0.4954 33 1 2.5049 -1.8117 -1.0970 34 1 4.5994 -2.5845 -2.6063 35 1 4.6004 -3.5064 -1.0835 36 1 6.6576 -4.6681 -3.9542 37 1 5.3739 -4.5750 -2.7192 38 1 6.4722 -6.8403 -2.8342 39 1 6.6273 -6.0663 -1.2402 40 1 10.4948 -6.2647 -5.0028 41 1 10.5470 -7.2399 -3.5146 42 1 10.8658 -4.2138 -3.7475 43 1 12.1028 -5.3902 -3.2385 44 1 13.9640 -3.5946 -2.1568 45 1 8.9889 -2.8019 -1.5762 46 1 8.9715 -3.5010 -3.2143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176983267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:18 Heat of formation + Delta-G solvation = -15.929256 kcal Electronic energy + Delta-G solvation = -29614.438997 eV Core-core repulsion = 25507.294519 eV Total energy + Delta-G solvation = -4107.144478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.45848 -39.52133 -38.20710 -35.86864 -35.42202 -34.62489 -32.98092 -31.96842 -31.48211 -30.72711 -29.37079 -27.54819 -26.88136 -24.70555 -23.83459 -22.76858 -21.51593 -21.00282 -19.68621 -18.79869 -18.21489 -17.52931 -16.92287 -16.54386 -16.14250 -15.87067 -15.43824 -15.25344 -15.17994 -15.02774 -14.46333 -14.42547 -13.97999 -13.73172 -13.55119 -13.35991 -13.28340 -13.06606 -12.67396 -12.39737 -12.29044 -12.06904 -11.83785 -11.36350 -11.20952 -11.06038 -10.95896 -10.86180 -10.76180 -10.57484 -10.23233 -10.17576 -10.03669 -9.90696 -9.60721 -9.30551 -9.20230 -8.98213 -8.57799 -8.18813 -6.74725 -5.84752 -3.28356 1.99695 2.34261 2.55296 2.97240 3.00897 3.35178 3.43126 3.45210 3.50857 3.86187 4.31081 4.42749 4.43308 4.69620 4.91711 5.04250 5.08462 5.14718 5.22051 5.27553 5.30950 5.37543 5.43920 5.43977 5.63610 5.77106 5.78854 6.02176 6.05812 6.08532 6.08888 6.15390 6.31051 6.36528 6.44403 6.70261 6.79259 6.98581 7.07204 7.09964 7.23243 7.49564 7.72906 7.79354 7.88801 8.10524 8.31721 8.57656 9.10233 9.71917 10.29108 11.22875 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.002743 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.308132 B =10205.655989 C =11341.270046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.205 4.205 3 C 0.230 3.770 4 N -0.738 5.738 5 C 0.513 3.487 6 O -0.484 6.484 7 C -0.162 4.162 8 C 0.510 3.490 9 O -0.497 6.497 10 N -0.610 5.610 11 C 0.113 3.887 12 C -0.123 4.123 13 C 0.081 3.919 14 H 0.051 0.949 15 O -0.388 6.388 16 C 0.040 3.960 17 C 0.137 3.863 18 N -0.583 5.583 19 C -0.254 4.254 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.135 3.865 28 H 0.073 0.927 29 C 0.106 3.894 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.401 0.599 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.028 0.972 43 H 0.096 0.904 44 H 0.255 0.745 45 H 0.089 0.911 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 -1.766 -2.695 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.206 4.206 3 C 0.108 3.892 4 N -0.393 5.393 5 C 0.297 3.703 6 O -0.355 6.355 7 C -0.205 4.205 8 C 0.295 3.705 9 O -0.370 6.370 10 N -0.345 5.345 11 C -0.010 4.010 12 C -0.162 4.162 13 C 0.021 3.979 14 H 0.069 0.931 15 O -0.308 6.308 16 C -0.038 4.038 17 C 0.011 3.989 18 N -0.306 5.306 19 C -0.383 4.383 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.543 5.543 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.216 1.216 27 C 0.026 3.974 28 H 0.091 0.909 29 C -0.017 4.017 30 H 0.238 0.762 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.508 -0.561 -2.180 22.620 hybrid contribution 0.341 -0.598 0.471 0.834 sum -22.167 -1.158 -1.709 22.263 Atomic orbital electron populations 1.25014 0.95933 0.98384 1.00059 1.22986 0.94289 1.02086 1.01194 1.18042 0.82867 0.89629 0.98653 1.45983 1.07202 1.26784 1.59369 1.20130 0.81641 0.87519 0.80961 1.90906 1.54161 1.45243 1.45181 1.21619 0.96418 0.98919 1.03570 1.19792 0.88446 0.82358 0.79926 1.90872 1.69082 1.34354 1.42687 1.48220 1.08074 1.24278 1.53935 1.21602 0.95601 0.86381 0.97416 1.21813 0.95148 0.97589 1.01630 1.22233 0.92969 0.98751 0.83918 0.93106 1.87700 1.24494 1.93731 1.24851 1.23317 0.81065 0.99470 0.99902 1.21472 0.99332 0.94198 0.83880 1.44308 0.99057 1.84514 1.02692 1.19214 0.91350 1.36740 0.91005 0.91269 1.25064 0.99086 0.97361 0.97947 1.70027 1.18799 1.36119 1.29400 0.86172 0.81717 0.77820 0.80765 1.20211 1.21512 1.21575 1.21561 0.86282 0.91748 0.97795 0.90893 1.22263 0.76311 1.00830 1.02340 0.76187 0.88989 0.89012 0.76498 0.86269 0.86194 0.90345 0.90826 0.90548 0.90492 0.90156 0.94125 0.95357 0.88599 0.93487 0.89294 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 19.25 29.55 0.57 -0.49 16 2 C -0.21 -1.57 13.46 -37.12 -0.50 -2.07 16 3 C 0.23 2.00 6.15 -6.83 -0.04 1.96 16 4 N -0.74 -6.31 5.54 -63.17 -0.35 -6.66 16 5 C 0.51 6.41 7.82 -10.98 -0.09 6.32 16 6 O -0.48 -8.86 14.18 -18.96 -0.27 -9.13 16 7 C -0.16 -1.65 4.56 -29.04 -0.13 -1.78 16 8 C 0.51 8.39 7.70 -10.99 -0.08 8.30 16 9 O -0.50 -11.03 13.59 -18.97 -0.26 -11.29 16 10 N -0.61 -9.69 2.92 -172.97 -0.51 -10.20 16 11 C 0.11 1.32 6.24 -3.81 -0.02 1.29 16 12 C -0.12 -1.51 5.79 -26.91 -0.16 -1.67 16 13 C 0.08 1.38 2.73 -26.89 -0.07 1.31 16 14 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 15 O -0.39 -7.00 9.63 -35.23 -0.34 -7.34 16 16 C 0.04 0.76 6.97 37.28 0.26 1.02 16 17 C 0.14 3.17 4.98 -3.55 -0.02 3.16 16 18 N -0.58 -14.29 2.74 -163.89 -0.45 -14.74 16 19 C -0.25 -6.90 9.69 -15.06 -0.15 -7.04 16 20 H 0.07 1.87 7.89 -52.48 -0.41 1.45 16 21 C 0.00 0.12 4.96 -17.43 -0.09 0.04 16 22 N -0.90 -25.86 11.14 55.49 0.62 -25.24 16 23 Si 0.91 21.73 29.59 -169.99 -5.03 16.70 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.13 2.79 2.97 -67.09 -0.20 2.59 16 28 H 0.07 1.56 7.99 -51.93 -0.42 1.15 16 29 C 0.11 2.17 5.63 -3.74 -0.02 2.15 16 30 H 0.22 0.56 7.80 -54.10 -0.42 0.13 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 2.18 8.45 -40.82 -0.34 1.84 16 34 H 0.12 0.82 7.89 -51.93 -0.41 0.41 16 35 H 0.12 0.82 7.80 -51.92 -0.40 0.42 16 36 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 37 H 0.07 0.55 5.96 -51.93 -0.31 0.24 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 42 H 0.03 0.70 7.26 -51.93 -0.38 0.33 16 43 H 0.10 2.46 6.12 -51.93 -0.32 2.15 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.09 2.16 7.00 -51.93 -0.36 1.80 16 46 H 0.07 1.45 6.72 -51.93 -0.35 1.10 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -36.46 373.64 -8.32 -44.78 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.63 Total: 2.41 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -0.74 Total: 15.08 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.69 Total: -56.84 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.87 Total: -27.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.46 -8.32 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176983267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.856 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds