Wall clock time and date at job start Tue Mar 31 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46487 * 109.47285 * 31.17706 * 3 2 1 5 5 C 1.34780 * 120.00109 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99926 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00365 * 180.02562 * 5 4 3 8 8 C 1.50692 * 109.47441 * 180.02562 * 7 5 4 9 9 O 1.21289 * 119.99829 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00290 * 179.97438 * 8 7 5 11 11 C 1.46770 * 121.51054 * 1.84652 * 10 8 7 12 12 C 1.53156 * 107.66484 * 235.12916 * 11 10 8 13 13 C 1.52501 * 109.79996 * 303.85336 * 12 11 10 14 14 H 1.09006 * 108.93907 * 179.66602 * 13 12 11 15 15 O 1.42694 * 110.62552 * 298.70781 * 13 12 11 16 16 C 1.43071 * 113.88048 * 185.34700 * 15 13 12 17 17 C 1.53234 * 109.44587 * 298.35623 * 16 15 13 18 18 N 1.47175 * 108.69421 * 51.58400 * 17 16 15 19 19 C 1.36935 * 121.22505 * 129.02764 * 18 17 16 20 20 H 1.08008 * 119.99988 * 206.17964 * 19 18 17 21 21 C 1.38812 * 120.00068 * 26.17241 * 19 18 17 22 22 N 1.31611 * 120.00185 * 16.92616 * 21 19 18 23 23 Si 1.86800 * 120.00040 * 196.92315 * 21 19 18 24 24 H 1.48504 * 109.47097 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47192 * 119.99780 * 23 21 19 26 26 H 1.48496 * 109.47390 * 240.00230 * 23 21 19 27 27 C 1.47595 * 117.55085 * 309.04752 * 18 17 16 28 28 H 1.09001 * 110.32096 * 172.31428 * 27 18 17 29 29 C 1.46800 * 120.72349 * 180.02562 * 10 8 7 30 30 H 4.40636 * 5.51378 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.46773 * 271.17657 * 3 2 1 32 32 H 1.08997 * 109.46699 * 151.18148 * 3 2 1 33 33 H 0.97000 * 120.00334 * 0.02562 * 4 3 2 34 34 H 1.09003 * 109.47168 * 59.99660 * 7 5 4 35 35 H 1.09011 * 109.46664 * 299.99871 * 7 5 4 36 36 H 1.09004 * 111.36852 * 114.90626 * 11 10 8 37 37 H 1.08998 * 108.67082 * 353.81393 * 11 10 8 38 38 H 1.09004 * 109.41354 * 183.75156 * 12 11 10 39 39 H 1.08998 * 109.41997 * 63.95748 * 12 11 10 40 40 H 1.08994 * 109.47500 * 178.36528 * 16 15 13 41 41 H 1.09001 * 109.47796 * 58.34931 * 16 15 13 42 42 H 1.09003 * 109.59814 * 291.82301 * 17 16 15 43 43 H 1.08991 * 109.73079 * 171.42499 * 17 16 15 44 44 H 0.97003 * 120.00418 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.51940 * 5.78931 * 29 10 8 46 46 H 1.09000 * 109.51897 * 245.60738 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1807 -0.7150 5 6 4.4601 -1.3906 -0.8429 6 8 5.2478 -0.6010 -0.3665 7 6 4.9631 -2.6056 -1.5789 8 6 6.4700 -2.6050 -1.5788 9 8 7.0760 -1.7060 -1.0350 10 7 7.1444 -3.6033 -2.1829 11 6 6.4454 -4.6861 -2.8851 12 6 6.9242 -6.0126 -2.2876 13 6 8.4428 -6.1068 -2.3896 14 1 8.7686 -7.0522 -1.9555 15 8 8.8581 -6.0714 -3.7543 16 6 10.2621 -6.2768 -3.9380 17 6 11.0377 -5.1591 -3.2328 18 7 10.5618 -5.0586 -1.8437 19 6 11.4378 -5.0611 -0.7913 20 1 11.1142 -5.4054 0.1799 21 6 12.7419 -4.6213 -0.9726 22 7 13.0528 -3.9023 -2.0302 23 14 14.0554 -5.0498 0.2845 24 1 13.4533 -5.8615 1.3725 25 1 15.1352 -5.8282 -0.3736 26 1 14.6221 -3.8008 0.8537 27 6 9.1055 -4.9554 -1.6268 28 1 8.8754 -5.0241 -0.5636 29 6 8.6123 -3.6188 -2.1919 30 1 -1.0498 -0.0002 -0.0004 31 1 3.0093 -0.0203 1.0275 32 1 3.0089 0.9012 -0.4954 33 1 2.5049 -1.8117 -1.0970 34 1 4.5994 -2.5845 -2.6063 35 1 4.6004 -3.5064 -1.0835 36 1 6.6576 -4.6681 -3.9542 37 1 5.3739 -4.5750 -2.7192 38 1 6.4722 -6.8403 -2.8342 39 1 6.6273 -6.0663 -1.2402 40 1 10.4948 -6.2647 -5.0028 41 1 10.5470 -7.2399 -3.5146 42 1 10.8658 -4.2138 -3.7475 43 1 12.1028 -5.3902 -3.2385 44 1 13.9640 -3.5946 -2.1568 45 1 8.9889 -2.8019 -1.5762 46 1 8.9715 -3.5010 -3.2143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176983267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:17 Heat of formation + Delta-G solvation = -43.416355 kcal Electronic energy + Delta-G solvation = -29615.630928 eV Core-core repulsion = 25507.294519 eV Total energy + Delta-G solvation = -4108.336409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.68334 -40.76314 -39.53928 -37.12594 -36.44892 -36.34862 -33.80114 -33.47697 -33.01329 -31.88579 -30.77012 -29.20847 -27.82895 -26.00116 -25.60401 -24.38155 -22.88762 -22.07740 -20.89461 -19.83468 -19.30833 -18.90200 -18.54296 -17.43586 -17.20048 -17.04862 -16.97419 -16.84188 -16.41250 -16.25952 -16.11281 -15.60221 -15.42070 -14.85628 -14.73621 -14.60930 -14.49765 -14.30551 -14.18570 -13.86192 -13.63102 -13.34297 -13.09069 -12.93251 -12.83986 -12.57372 -12.43860 -12.20237 -12.07960 -11.84279 -11.80398 -11.64235 -11.44375 -11.21077 -10.97743 -10.77755 -10.53876 -10.44712 -10.11093 -9.62622 -8.71279 -7.94486 -5.41538 1.37279 1.41330 1.43013 1.53666 1.61608 1.74430 1.85806 1.98469 2.44015 2.61437 2.92670 3.19893 3.37682 3.42636 3.48029 3.82199 3.97045 4.06092 4.17966 4.25779 4.31266 4.36129 4.38087 4.47500 4.51327 4.56571 4.57200 4.64970 4.69972 4.85781 4.89253 4.95170 5.02302 5.03224 5.09705 5.27205 5.33242 5.36228 5.50658 5.59165 5.60501 6.25476 6.37372 6.50646 6.58579 6.60620 7.02991 7.23140 7.38515 7.70613 8.24295 9.10427 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.002743 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.308132 B =10205.655989 C =11341.270046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.247 4.247 3 C 0.231 3.769 4 N -0.714 5.714 5 C 0.509 3.491 6 O -0.556 6.556 7 C -0.145 4.145 8 C 0.499 3.501 9 O -0.568 6.568 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.048 0.952 15 O -0.381 6.381 16 C 0.054 3.946 17 C 0.144 3.856 18 N -0.603 5.603 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.296 1.296 27 C 0.131 3.869 28 H 0.058 0.942 29 C 0.125 3.875 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.421 0.579 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.046 0.954 42 H -0.002 1.002 43 H 0.066 0.934 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.239 -4.501 -3.539 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.247 4.247 3 C 0.108 3.892 4 N -0.369 5.369 5 C 0.295 3.705 6 O -0.431 6.431 7 C -0.187 4.187 8 C 0.288 3.712 9 O -0.446 6.446 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.155 4.155 13 C 0.025 3.975 14 H 0.066 0.934 15 O -0.300 6.300 16 C -0.024 4.024 17 C 0.018 3.982 18 N -0.326 5.326 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.798 3.202 24 H -0.191 1.191 25 H -0.209 1.209 26 H -0.223 1.223 27 C 0.023 3.977 28 H 0.077 0.923 29 C -0.001 4.001 30 H 0.272 0.728 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.258 0.742 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.098 0.902 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.017 0.983 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -27.288 -3.371 -3.062 27.665 hybrid contribution 1.664 0.313 0.754 1.854 sum -25.624 -3.058 -2.308 25.908 Atomic orbital electron populations 1.25841 0.96589 0.96006 0.97662 1.22871 0.94232 1.04272 1.03372 1.17877 0.84144 0.89295 0.97894 1.45759 1.06316 1.26787 1.58082 1.20618 0.82154 0.87524 0.80243 1.90901 1.56148 1.47755 1.48336 1.21674 0.90706 0.99639 1.06667 1.20960 0.91190 0.80921 0.78178 1.90860 1.71106 1.37072 1.45526 1.48273 1.05873 1.25701 1.54195 1.22038 0.98388 0.84104 0.96882 1.21888 0.90798 0.99274 1.03502 1.22315 0.96319 0.96200 0.82656 0.93442 1.87719 1.23450 1.93476 1.25352 1.23122 0.81038 0.97321 1.00893 1.21309 0.98532 0.94620 0.83726 1.44554 1.00602 1.84868 1.02583 1.19496 0.92257 1.35986 0.91670 0.91634 1.25829 1.01043 0.97666 0.99963 1.70184 1.18809 1.37552 1.31261 0.85173 0.79104 0.77181 0.78776 1.19056 1.20919 1.22340 1.21733 0.84582 0.93554 0.97805 0.92346 1.21607 0.80132 0.98742 0.99629 0.72848 0.90204 0.90194 0.74150 0.81393 0.81210 0.90229 0.84759 0.86729 0.88891 0.87358 0.93554 0.98343 0.91578 0.93931 0.94892 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 19.25 74.32 1.43 0.18 16 2 C -0.25 -3.32 13.46 31.13 0.42 -2.91 16 3 C 0.23 3.95 6.15 84.58 0.52 4.47 16 4 N -0.71 -10.68 5.54 -472.15 -2.61 -13.30 16 5 C 0.51 12.03 7.82 87.66 0.69 12.72 16 6 O -0.56 -21.27 14.18 20.40 0.29 -20.98 16 7 C -0.15 -2.36 4.56 29.10 0.13 -2.23 16 8 C 0.50 16.11 7.70 87.65 0.68 16.78 16 9 O -0.57 -26.82 13.59 20.38 0.28 -26.54 16 10 N -0.61 -18.57 2.92 -819.53 -2.39 -20.96 16 11 C 0.11 1.95 6.24 86.38 0.54 2.49 16 12 C -0.12 -2.28 5.79 30.48 0.18 -2.11 16 13 C 0.08 2.71 2.73 30.49 0.08 2.80 16 14 H 0.05 1.58 8.11 -2.38 -0.02 1.56 16 15 O -0.38 -12.92 9.63 -148.98 -1.43 -14.36 16 16 C 0.05 2.00 6.97 72.06 0.50 2.50 16 17 C 0.14 6.99 4.98 86.33 0.43 7.42 16 18 N -0.60 -30.97 2.74 -672.42 -1.84 -32.81 16 19 C -0.26 -15.02 9.69 84.03 0.81 -14.20 16 20 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 21 C -0.05 -2.84 4.96 84.86 0.42 -2.41 16 22 N -0.93 -56.65 11.14 21.65 0.24 -56.41 16 23 Si 0.97 46.33 29.59 68.60 2.03 48.36 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 C 0.13 5.57 2.97 44.94 0.13 5.70 16 28 H 0.06 2.60 7.99 -2.39 -0.02 2.58 16 29 C 0.12 5.38 5.63 86.41 0.49 5.87 16 30 H 0.26 0.09 7.80 -4.43 -0.03 0.05 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.42 2.87 8.45 -92.71 -0.78 2.09 16 34 H 0.17 1.18 7.89 -2.39 -0.02 1.16 16 35 H 0.17 1.15 7.80 -2.38 -0.02 1.13 16 36 H 0.08 1.53 7.94 -2.39 -0.02 1.52 16 37 H 0.13 0.92 5.96 -2.39 -0.01 0.90 16 38 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 42 H 0.00 -0.08 7.26 -2.39 -0.02 -0.10 16 43 H 0.07 3.59 6.12 -2.39 -0.01 3.58 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.03 1.76 7.00 -2.39 -0.02 1.74 16 46 H 0.05 2.16 6.72 -2.39 -0.02 2.15 16 Total: -1.00 -92.51 373.64 2.22 -90.29 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.22 Total: 9.64 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 7.45 Total: 37.07 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -6.61 Total: -123.47 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -0.87 Total: -61.89 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -92.51 2.22 -90.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176983267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.875 kcal (2) G-P(sol) polarization free energy of solvation -92.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds