Wall clock time and date at job start Tue Mar 31 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47088 * 48.72126 * 3 2 1 5 5 C 1.34775 * 120.00132 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99481 * 359.97438 * 5 4 3 7 7 C 1.50691 * 120.00351 * 179.97438 * 5 4 3 8 8 C 1.50703 * 109.47484 * 179.97438 * 7 5 4 9 9 O 1.21285 * 119.99571 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00156 * 179.97438 * 8 7 5 11 11 C 1.46844 * 120.41439 * 0.02839 * 10 8 7 12 12 C 1.53368 * 109.23916 * 232.24329 * 11 10 8 13 13 C 1.52787 * 108.81918 * 306.15066 * 12 11 10 14 14 H 1.08996 * 109.34149 * 302.83472 * 13 12 11 15 15 O 1.42602 * 111.11799 * 182.04752 * 13 12 11 16 16 C 1.43152 * 113.62174 * 176.34195 * 15 13 12 17 17 C 1.53196 * 109.73818 * 61.68289 * 16 15 13 18 18 N 1.47343 * 108.81404 * 308.80933 * 17 16 15 19 19 C 1.36942 * 121.30473 * 230.22965 * 18 17 16 20 20 H 1.08002 * 120.00161 * 152.55431 * 19 18 17 21 21 C 1.38812 * 119.99761 * 332.54592 * 19 18 17 22 22 N 1.31615 * 119.99970 * 344.72098 * 21 19 18 23 23 Si 1.86803 * 119.99886 * 164.72184 * 21 19 18 24 24 H 1.48500 * 109.47071 * 59.99584 * 23 21 19 25 25 H 1.48493 * 109.47181 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46742 * 300.00135 * 23 21 19 27 27 C 1.46714 * 117.02411 * 50.57345 * 18 17 16 28 28 H 1.09001 * 110.62087 * 67.41509 * 27 18 17 29 29 C 1.47127 * 120.41241 * 179.97438 * 10 8 7 30 30 H 4.40646 * 5.51399 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.46779 * 288.72178 * 3 2 1 32 32 H 1.09000 * 109.46789 * 168.71743 * 3 2 1 33 33 H 0.97006 * 119.99905 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.47301 * 59.99914 * 7 5 4 35 35 H 1.09005 * 109.47470 * 300.00173 * 7 5 4 36 36 H 1.09001 * 109.50446 * 352.17174 * 11 10 8 37 37 H 1.09003 * 109.51353 * 112.31310 * 11 10 8 38 38 H 1.09004 * 109.57908 * 65.95198 * 12 11 10 39 39 H 1.09000 * 109.58184 * 186.21803 * 12 11 10 40 40 H 1.08991 * 109.42850 * 181.76709 * 16 15 13 41 41 H 1.09004 * 109.42587 * 301.66313 * 16 15 13 42 42 H 1.09000 * 109.57969 * 68.60918 * 17 16 15 43 43 H 1.09004 * 109.58040 * 188.87266 * 17 16 15 44 44 H 0.97003 * 119.99938 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.72787 * 246.45803 * 29 10 8 46 46 H 1.09003 * 109.72356 * 7.08149 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9104 -1.0380 5 6 4.4599 -1.0719 -1.2235 6 8 5.2478 -0.4626 -0.5313 7 6 4.9627 -2.0094 -2.2908 8 6 6.4697 -2.0077 -2.2917 9 8 7.0758 -1.3138 -1.5029 10 7 7.1439 -2.7779 -3.1683 11 6 6.4193 -3.6219 -4.1270 12 6 6.9420 -5.0605 -4.0298 13 6 8.4598 -5.0462 -4.2045 14 1 8.7090 -4.5815 -5.1585 15 8 8.9934 -6.3681 -4.1694 16 6 10.4033 -6.4242 -4.4112 17 6 11.1463 -5.6429 -3.3228 18 7 10.5469 -4.3018 -3.2075 19 6 11.3211 -3.1724 -3.2264 20 1 10.9069 -2.2397 -3.5797 21 6 12.6382 -3.2265 -2.7914 22 7 13.0576 -4.2579 -2.0896 23 14 13.8153 -1.8353 -3.2020 24 1 13.3000 -0.5657 -2.6294 25 1 15.1519 -2.1318 -2.6271 26 1 13.9296 -1.7027 -4.6767 27 6 9.0884 -4.2336 -3.0640 28 1 8.7773 -4.6471 -2.1047 29 6 8.6151 -2.7828 -3.1776 30 1 -1.0499 0.0000 -0.0003 31 1 3.0095 -0.3290 0.9733 32 1 3.0089 1.0086 -0.2011 33 1 2.5046 -1.3974 -1.5919 34 1 4.5988 -1.6805 -3.2641 35 1 4.6003 -3.0174 -2.0891 36 1 5.3545 -3.6050 -3.8945 37 1 6.5781 -3.2443 -5.1371 38 1 6.6906 -5.4753 -3.0536 39 1 6.4879 -5.6678 -4.8127 40 1 10.7320 -7.4633 -4.4000 41 1 10.6219 -5.9851 -5.3846 42 1 11.0559 -6.1665 -2.3711 43 1 12.1988 -5.5530 -3.5917 44 1 13.9781 -4.2958 -1.7859 45 1 8.9787 -2.3489 -4.1090 46 1 8.9902 -2.2062 -2.3320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176983268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:22 Heat of formation + Delta-G solvation = -15.530476 kcal Electronic energy + Delta-G solvation = -29515.960743 eV Core-core repulsion = 25408.833557 eV Total energy + Delta-G solvation = -4107.127186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.51250 -39.48898 -38.26650 -36.08333 -35.51059 -34.70459 -33.00811 -32.06051 -31.38354 -30.74313 -29.67661 -27.39048 -26.75362 -24.97795 -23.92539 -22.16298 -21.58280 -20.81817 -19.74766 -19.33685 -18.51551 -17.60297 -16.90908 -16.45576 -16.18601 -16.06162 -15.43039 -15.33067 -15.11462 -14.97695 -14.59134 -14.10610 -14.02652 -13.77210 -13.60644 -13.39719 -13.26063 -13.03263 -12.84869 -12.58352 -12.53845 -12.05490 -11.81848 -11.34012 -11.22482 -10.99383 -10.91593 -10.87519 -10.83940 -10.59812 -10.25271 -10.22365 -10.05274 -9.94954 -9.60677 -9.32890 -9.26605 -8.97408 -8.51650 -8.30144 -6.71631 -5.82201 -3.28018 1.97805 2.33062 2.51802 2.88130 2.94430 3.39319 3.40843 3.44298 3.45979 3.84805 4.21553 4.38228 4.44900 4.61926 4.83554 4.99857 5.01628 5.16970 5.20166 5.25322 5.30469 5.38564 5.40582 5.42860 5.52329 5.69323 5.74584 5.91268 5.94468 6.06318 6.10007 6.15330 6.25509 6.33912 6.46993 6.67839 6.73896 6.89388 7.06052 7.13973 7.20300 7.51581 7.62891 7.73497 7.89230 8.07107 8.34155 8.47938 9.11481 9.74969 10.33075 11.25869 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.002860 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.962775 B = 9787.432461 C =11209.501029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.206 4.206 3 C 0.231 3.769 4 N -0.737 5.737 5 C 0.513 3.487 6 O -0.484 6.484 7 C -0.163 4.163 8 C 0.511 3.489 9 O -0.492 6.492 10 N -0.615 5.615 11 C 0.112 3.888 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.053 0.947 15 O -0.390 6.390 16 C 0.040 3.960 17 C 0.141 3.859 18 N -0.586 5.586 19 C -0.258 4.258 20 H 0.072 0.928 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.137 3.863 28 H 0.037 0.963 29 C 0.125 3.875 30 H 0.221 0.779 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.401 0.599 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.027 0.973 43 H 0.095 0.905 44 H 0.256 0.744 45 H 0.072 0.928 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.620 0.945 -4.482 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.206 4.206 3 C 0.108 3.892 4 N -0.393 5.393 5 C 0.297 3.703 6 O -0.355 6.355 7 C -0.206 4.206 8 C 0.296 3.704 9 O -0.364 6.364 10 N -0.351 5.351 11 C -0.012 4.012 12 C -0.164 4.164 13 C 0.017 3.983 14 H 0.071 0.929 15 O -0.309 6.309 16 C -0.038 4.038 17 C 0.016 3.984 18 N -0.311 5.311 19 C -0.387 4.387 20 H 0.090 0.910 21 C -0.192 4.192 22 N -0.545 5.545 23 Si 0.734 3.266 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.029 3.971 28 H 0.054 0.946 29 C 0.004 3.996 30 H 0.238 0.762 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.542 1.646 -3.385 22.854 hybrid contribution 0.251 0.405 -0.536 0.718 sum -22.291 2.051 -3.922 22.727 Atomic orbital electron populations 1.25020 0.95937 0.99417 0.98957 1.22981 0.94285 1.01547 1.01791 1.18047 0.82883 0.95366 0.92886 1.45979 1.07177 1.47610 1.38531 1.20100 0.81682 0.83327 0.85148 1.90911 1.54157 1.45169 1.45240 1.21628 0.96191 1.02068 1.00708 1.19820 0.88565 0.80826 0.81216 1.90881 1.69053 1.39496 1.36991 1.48275 1.07804 1.43734 1.35284 1.21690 0.96062 0.90114 0.93325 1.21848 0.95188 0.95979 1.03335 1.22461 0.92225 0.84765 0.98894 0.92926 1.87732 1.23263 1.26815 1.93130 1.23327 0.80791 1.00351 0.99317 1.21437 0.98201 0.84258 0.94531 1.43991 0.99147 1.02846 1.85071 1.19084 0.93338 0.89351 1.36961 0.91031 1.25088 0.99112 0.97732 0.97301 1.70007 1.16588 1.30962 1.36959 0.86336 0.80226 0.81961 0.78104 1.20596 1.21560 1.20949 1.21307 0.86983 0.93149 0.95671 0.94590 1.21770 0.75937 0.97943 1.03971 0.76179 0.88964 0.88989 0.76477 0.86152 0.86048 0.89796 0.91149 0.90857 0.90295 0.90103 0.94124 0.95452 0.88716 0.93430 0.91014 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 19.25 29.55 0.57 -0.47 16 2 C -0.21 -1.55 13.46 -37.12 -0.50 -2.05 16 3 C 0.23 1.96 6.15 -6.82 -0.04 1.92 16 4 N -0.74 -6.11 5.54 -63.16 -0.35 -6.46 16 5 C 0.51 6.23 7.82 -10.99 -0.09 6.14 16 6 O -0.48 -8.69 14.18 -18.97 -0.27 -8.96 16 7 C -0.16 -1.57 4.53 -29.04 -0.13 -1.70 16 8 C 0.51 8.10 7.69 -10.99 -0.08 8.01 16 9 O -0.49 -10.63 13.58 -18.96 -0.26 -10.89 16 10 N -0.61 -9.33 2.98 -172.66 -0.51 -9.84 16 11 C 0.11 1.18 6.32 -3.66 -0.02 1.15 16 12 C -0.12 -1.58 5.82 -26.65 -0.16 -1.74 16 13 C 0.08 1.34 2.49 -26.58 -0.07 1.28 16 14 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 15 O -0.39 -7.54 10.48 -35.23 -0.37 -7.91 16 16 C 0.04 0.78 6.96 37.26 0.26 1.04 16 17 C 0.14 3.38 5.40 -3.48 -0.02 3.36 16 18 N -0.59 -14.61 3.03 -164.40 -0.50 -15.10 16 19 C -0.26 -6.96 8.87 -15.06 -0.13 -7.10 16 20 H 0.07 1.88 6.28 -52.49 -0.33 1.55 16 21 C 0.01 0.19 4.99 -17.43 -0.09 0.11 16 22 N -0.90 -26.12 11.15 55.49 0.62 -25.50 16 23 Si 0.90 21.84 29.58 -169.99 -5.03 16.82 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.14 2.90 3.03 -67.54 -0.20 2.70 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 C 0.13 2.46 4.49 -3.69 -0.02 2.44 16 30 H 0.22 0.53 7.80 -54.10 -0.42 0.11 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 2.07 8.45 -40.82 -0.34 1.72 16 34 H 0.12 0.72 7.95 -51.93 -0.41 0.31 16 35 H 0.12 0.79 7.66 -51.93 -0.40 0.40 16 36 H 0.08 0.55 5.91 -51.93 -0.31 0.24 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.46 6.23 -51.93 -0.32 2.13 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.07 1.40 7.34 -51.93 -0.38 1.02 16 46 H 0.10 2.38 6.81 -51.93 -0.35 2.03 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -37.16 373.25 -8.40 -45.56 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.63 Total: 1.57 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -0.72 Total: 15.09 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.74 Total: -56.90 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.90 Total: -27.76 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.16 -8.40 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176983268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.029 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds