Wall clock time and date at job start Tue Mar 31 2020 18:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36009 * 117.00106 * 2 1 4 4 C 1.35856 * 120.31691 * 359.97438 * 3 2 1 5 5 N 1.35439 * 120.77732 * 179.97438 * 4 3 2 6 6 H 0.97000 * 119.28942 * 180.02562 * 5 4 3 7 7 C 1.36424 * 121.41198 * 0.02776 * 5 4 3 8 8 C 1.48069 * 119.71648 * 179.97438 * 7 5 4 9 9 O 1.21520 * 119.99785 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00296 * 0.02562 * 8 7 5 11 11 C 1.46500 * 119.99873 * 174.96405 * 10 8 7 12 12 C 1.52998 * 109.47275 * 304.31905 * 11 10 8 13 13 C 1.53003 * 109.46885 * 64.31974 * 11 10 8 14 14 N 1.46506 * 109.47201 * 60.00182 * 13 11 10 15 15 C 1.36932 * 119.99879 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00483 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99581 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00301 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46786 * 60.00165 * 19 17 15 21 21 H 1.48501 * 109.47027 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47276 * 300.00277 * 19 17 15 23 23 C 1.53004 * 109.46866 * 184.31517 * 11 10 8 24 24 C 1.53005 * 117.49512 * 132.83388 * 23 11 10 25 25 C 1.53002 * 117.49676 * 64.17943 * 23 11 10 26 26 C 1.36180 * 120.55904 * 0.02562 * 7 5 4 27 27 C 1.41576 * 120.31473 * 179.72584 * 3 2 1 28 28 O 1.22270 * 120.65129 * 359.97438 * 27 3 2 29 29 H 1.08999 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46678 * 300.00281 * 1 2 3 31 31 H 1.08999 * 109.46935 * 59.99698 * 1 2 3 32 32 H 1.07999 * 119.60893 * 359.97438 * 4 3 2 33 33 H 0.96995 * 120.00033 * 354.96529 * 10 8 7 34 34 H 1.08995 * 109.46967 * 60.00319 * 12 11 10 35 35 H 1.09007 * 109.46519 * 179.97438 * 12 11 10 36 36 H 1.08991 * 109.47129 * 299.99750 * 12 11 10 37 37 H 1.08998 * 109.47087 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47523 * 299.99783 * 13 11 10 39 39 H 0.97000 * 119.99951 * 359.97438 * 14 13 11 40 40 H 0.97008 * 119.99794 * 179.97438 * 18 17 15 41 41 H 1.08994 * 115.55042 * 278.50677 * 23 11 10 42 42 H 1.09001 * 117.49723 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49698 * 145.01759 * 24 23 11 44 44 H 1.08997 * 117.49683 * 214.98009 * 25 23 11 45 45 H 1.09006 * 117.49779 * 359.97438 * 25 23 11 46 46 H 1.08001 * 120.40166 * 179.97438 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9181 3.5670 0.0000 6 1 1.3733 4.3695 0.0000 7 6 3.2774 3.6828 0.0005 8 6 3.8996 5.0265 0.0005 9 8 5.1099 5.1356 0.0004 10 7 3.1236 6.1284 0.0005 11 6 3.7353 7.4549 0.1118 12 6 4.5994 7.5139 1.3730 13 6 4.6077 7.7190 -1.1170 14 7 3.7802 7.6626 -2.3247 15 6 4.3476 7.8690 -3.5537 16 1 5.4051 8.0737 -3.6328 17 6 3.5637 7.8150 -4.6980 18 7 2.2751 7.5650 -4.6017 19 14 4.3376 8.0972 -6.3746 20 1 5.3898 7.0766 -6.6121 21 1 3.2949 7.9864 -7.4261 22 1 4.9435 9.4522 -6.4184 23 6 2.6374 8.5173 0.1956 24 6 2.7698 9.5858 1.2828 25 6 1.7146 8.4849 1.4156 26 6 4.0669 2.5732 -0.0001 27 6 3.4599 1.2937 0.0058 28 8 4.1430 0.2796 0.0114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2345 2.2974 -0.0014 33 1 2.1602 6.0432 -0.0732 34 1 5.3815 6.7571 1.3132 35 1 5.0548 8.5008 1.4555 36 1 3.9779 7.3258 2.2484 37 1 5.0624 8.7062 -1.0344 38 1 5.3898 6.9622 -1.1768 39 1 2.8305 7.4784 -2.2537 40 1 1.7272 7.5277 -5.4013 41 1 2.2020 8.8196 -0.7568 42 1 3.6393 9.5321 1.9379 43 1 2.4212 10.5910 1.0456 44 1 0.6723 8.7661 1.2659 45 1 1.8895 7.7064 2.1584 46 1 5.1427 2.6679 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267856955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:34 Heat of formation + Delta-G solvation = -16.229122 kcal Electronic energy + Delta-G solvation = -29741.081867 eV Core-core repulsion = 25633.924385 eV Total energy + Delta-G solvation = -4107.157482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51706 -40.22564 -38.58357 -37.79762 -37.55513 -34.88235 -33.77255 -31.83812 -31.46754 -30.61043 -29.66743 -27.80279 -26.07288 -24.82209 -23.57333 -23.17244 -22.49089 -22.21444 -20.86239 -19.81914 -19.05661 -18.17894 -17.66312 -17.26461 -16.31691 -16.21889 -16.07903 -15.56684 -15.31839 -15.12975 -14.66771 -14.55167 -14.49504 -14.17385 -13.95870 -13.65721 -13.37686 -13.11454 -12.86565 -12.80563 -12.50901 -12.27676 -12.10230 -11.74582 -11.62788 -11.52555 -11.23590 -11.05554 -10.86305 -10.81761 -10.37946 -10.19065 -10.03695 -9.92088 -9.74445 -9.51577 -9.47660 -8.94593 -8.87645 -7.75840 -6.94305 -5.82230 -3.08565 0.66677 1.08950 2.47105 2.77537 2.91538 3.10333 3.42799 3.46871 3.48746 3.69395 3.85934 4.23373 4.44109 4.52226 4.56443 4.63865 4.79699 4.88651 4.91071 4.95175 5.00442 5.17898 5.22914 5.27262 5.40486 5.51238 5.54820 5.61096 5.69978 5.82032 5.86353 6.02356 6.07715 6.09644 6.12742 6.24603 6.30717 6.44806 6.52751 6.57375 6.73531 6.90061 7.04912 7.44986 7.68333 7.98784 8.07332 8.37477 9.49502 10.04736 10.40387 11.40967 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.003911 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.955895 B = 7157.633524 C = 8733.579127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.289 6.289 3 C -0.036 4.036 4 C 0.031 3.969 5 N -0.561 5.561 6 H 0.420 0.580 7 C 0.132 3.868 8 C 0.563 3.437 9 O -0.495 6.495 10 N -0.702 5.702 11 C 0.202 3.798 12 C -0.167 4.167 13 C 0.143 3.857 14 N -0.726 5.726 15 C -0.233 4.233 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.938 5.938 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.153 4.153 24 C -0.169 4.169 25 C -0.185 4.185 26 C -0.215 4.215 27 C 0.401 3.599 28 O -0.501 6.501 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.169 0.831 33 H 0.392 0.608 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.380 0.620 40 H 0.254 0.746 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -3.809 15.940 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.087 4.087 4 C -0.096 4.096 5 N -0.174 5.174 6 H 0.257 0.743 7 C 0.019 3.981 8 C 0.347 3.653 9 O -0.368 6.368 10 N -0.353 5.353 11 C 0.118 3.882 12 C -0.225 4.225 13 C 0.015 3.985 14 N -0.370 5.370 15 C -0.364 4.364 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.588 5.588 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.171 4.171 24 C -0.206 4.206 25 C -0.222 4.222 26 C -0.242 4.242 27 C 0.291 3.709 28 O -0.385 6.385 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.186 0.814 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.214 0.786 40 H 0.064 0.936 41 H 0.142 0.858 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.169 -4.457 15.823 17.934 hybrid contribution -1.282 0.684 -1.227 1.902 sum -8.450 -3.773 14.596 17.283 Atomic orbital electron populations 1.23125 0.79279 1.04399 1.00950 1.86272 1.20241 1.24371 1.89160 1.20415 0.94827 0.84616 1.08876 1.21626 0.98732 0.84199 1.05043 1.40698 1.05206 1.08448 1.63045 0.74304 1.20516 0.82709 0.96034 0.98792 1.17741 0.87158 0.82644 0.77790 1.90799 1.12879 1.85392 1.47717 1.45883 1.09668 1.05917 1.73820 1.20158 0.92130 0.79194 0.96751 1.22309 1.00786 1.03644 0.95742 1.21094 0.93553 0.98910 0.84973 1.42203 1.07814 1.86293 1.00737 1.19192 0.93380 1.39851 0.84000 0.91273 1.24662 0.95652 1.02881 0.97691 1.69620 1.04329 1.56759 1.28060 0.86276 0.77948 0.78042 0.84032 1.21252 1.21762 1.21290 1.22581 0.99643 0.99580 0.95335 1.23066 1.01215 0.94594 1.01724 1.22981 0.96263 1.02191 1.00770 1.22450 1.02360 0.90337 1.09017 1.16792 0.86080 0.89822 0.78167 1.90846 1.65752 1.37562 1.44347 0.88007 0.92851 0.92633 0.81396 0.77324 0.90002 0.91048 0.92724 0.95407 0.93602 0.78599 0.93637 0.85759 0.88109 0.88709 0.88818 0.89013 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.74 10.33 -35.60 -0.37 -4.11 16 3 C -0.04 -0.48 6.71 -39.16 -0.26 -0.74 16 4 C 0.03 0.29 10.22 -16.81 -0.17 0.11 16 5 N -0.56 -5.21 5.26 -9.58 -0.05 -5.26 16 6 H 0.42 2.64 7.01 -40.82 -0.29 2.36 16 7 C 0.13 1.72 6.77 -82.53 -0.56 1.16 16 8 C 0.56 8.29 7.21 -12.23 -0.09 8.20 16 9 O -0.49 -8.86 12.51 5.35 0.07 -8.80 16 10 N -0.70 -9.00 4.71 -48.47 -0.23 -9.23 16 11 C 0.20 2.86 0.54 -131.82 -0.07 2.79 16 12 C -0.17 -2.07 6.98 37.16 0.26 -1.81 16 13 C 0.14 2.78 5.03 -4.04 -0.02 2.76 16 14 N -0.73 -17.09 5.04 -59.91 -0.30 -17.39 16 15 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.94 -27.02 13.06 55.49 0.72 -26.30 16 19 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 C -0.15 -1.95 4.84 -90.61 -0.44 -2.39 16 24 C -0.17 -1.77 9.64 -26.69 -0.26 -2.03 16 25 C -0.18 -1.75 9.82 -26.69 -0.26 -2.01 16 26 C -0.21 -3.25 9.53 -39.03 -0.37 -3.62 16 27 C 0.40 6.62 6.78 -37.02 -0.25 6.37 16 28 O -0.50 -10.15 17.71 -11.16 -0.20 -10.35 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.17 0.85 6.21 -52.49 -0.33 0.52 16 33 H 0.39 3.97 6.71 -40.82 -0.27 3.69 16 34 H 0.08 1.18 6.03 -51.93 -0.31 0.86 16 35 H 0.07 0.82 6.78 -51.92 -0.35 0.47 16 36 H 0.05 0.58 6.98 -51.93 -0.36 0.21 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 1.00 6.32 -51.93 -0.33 0.68 16 39 H 0.38 9.03 6.62 -40.82 -0.27 8.76 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.12 1.97 7.08 -51.93 -0.37 1.60 16 42 H 0.10 0.98 5.88 -51.93 -0.31 0.67 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.77 7.34 -51.93 -0.38 0.39 16 46 H 0.17 2.65 7.58 -52.49 -0.40 2.25 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -36.33 373.43 -7.50 -43.82 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.00 Total: 11.76 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.75 Total: 2.93 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.14 Total: -58.17 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.50 Total: -23.26 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.33 -7.50 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.594 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds